ZFP1 (ZFP1 zinc finger protein) - Rat Genome Database

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Gene: ZFP1 (ZFP1 zinc finger protein) Sus scrofa
Analyze
Symbol: ZFP1
Name: ZFP1 zinc finger protein
RGD ID: 13899100
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); macular corneal dystrophy (ortholog); paraplegia (ortholog); FOUND IN nucleus (inferred); PcG protein complex (inferred); transcription regulator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger protein 1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl612,480,278 - 12,531,530 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1612,480,298 - 12,549,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2612,297,108 - 12,364,225 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZFP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl612,480,278 - 12,531,530 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1612,480,298 - 12,549,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2612,297,108 - 12,364,225 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381675,119,002 - 75,172,234 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1675,148,494 - 75,172,236 (+)EnsemblGRCh38hg38GRCh38
GRCh371675,182,422 - 75,206,132 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361673,739,922 - 73,763,633 (+)NCBINCBI36Build 36hg18NCBI36
Build 341673,739,925 - 73,763,486NCBI
Celera1659,475,364 - 59,499,098 (+)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1660,933,122 - 60,956,836 (+)NCBIHuRef
CHM1_11676,594,604 - 76,618,256 (+)NCBICHM1_1
T2T-CHM13v2.01681,165,700 - 81,218,965 (+)NCBIT2T-CHM13v2.0
Zfp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398112,366,606 - 112,397,740 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8112,370,033 - 112,397,643 (+)EnsemblGRCm39 Ensembl
GRCm388111,643,443 - 111,671,108 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,643,401 - 111,671,011 (+)EnsemblGRCm38mm10GRCm38
MGSCv378114,167,343 - 114,194,911 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368114,530,116 - 114,557,684 (+)NCBIMGSCv36mm8
Celera8115,871,013 - 115,898,936 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.98NCBI
Zfp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81956,508,828 - 56,542,109 (+)NCBIGRCr8
mRatBN7.21939,599,497 - 39,633,490 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1939,599,954 - 39,632,995 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1946,399,286 - 46,431,714 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01947,052,614 - 47,085,039 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01949,357,102 - 49,389,996 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01943,852,707 - 43,886,907 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,882,249 - 43,885,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,660,333 - 54,694,879 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41941,578,221 - 41,591,204 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1938,977,483 - 39,011,456 (+)NCBICelera
Cytogenetic Map19q12NCBI
Zfp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554842,421,119 - 2,437,127 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554842,419,119 - 2,444,345 (-)NCBIChiLan1.0ChiLan1.0
ZFP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21884,865,880 - 84,890,131 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11690,787,818 - 90,812,099 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01655,717,256 - 55,741,496 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11675,068,184 - 75,091,710 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1675,068,184 - 75,091,710 (+)Ensemblpanpan1.1panPan2
ZFP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1575,542,012 - 75,568,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl575,543,677 - 75,568,845 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha575,518,367 - 75,545,367 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0575,898,296 - 75,925,298 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl575,898,301 - 75,925,288 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1575,802,709 - 75,829,735 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0575,625,440 - 75,652,460 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0576,117,069 - 76,143,961 (-)NCBIUU_Cfam_GSD_1.0
Zfp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934935,635,625 - 35,659,959 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647523,935,594 - 23,953,465 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647523,935,588 - 23,953,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,623,681 - 60,648,779 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604715,408,411 - 15,437,918 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474611,792,354 - 11,841,460 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZFP1
2703 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2
Low 10 3 3 3 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000031098   ⟹   ENSSSCP00000023927
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl612,483,216 - 12,531,497 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000081786   ⟹   ENSSSCP00000062181
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl612,480,278 - 12,531,530 (-)Ensembl
RefSeq Acc Id: XM_005664345   ⟹   XP_005664402
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1612,480,298 - 12,531,691 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013998177   ⟹   XP_013853631
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1612,480,298 - 12,531,690 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013998178   ⟹   XP_013853632
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1612,482,182 - 12,549,476 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013998179   ⟹   XP_013853633
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1612,482,182 - 12,531,690 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013998180   ⟹   XP_013853634
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1612,482,182 - 12,524,450 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005664402   ⟸   XM_005664345
- Peptide Label: isoform X2
- UniProtKB: A0A8D1RT25 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013853631   ⟸   XM_013998177
- Peptide Label: isoform X1
- UniProtKB: A0A8D1J2N4 (UniProtKB/TrEMBL),   A0A5G2QDG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013853632   ⟸   XM_013998178
- Peptide Label: isoform X1
- UniProtKB: A0A8D1J2N4 (UniProtKB/TrEMBL),   A0A5G2QDG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013853633   ⟸   XM_013998179
- Peptide Label: isoform X1
- UniProtKB: A0A8D1J2N4 (UniProtKB/TrEMBL),   A0A5G2QDG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013853634   ⟸   XM_013998180
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSSCP00000023927   ⟸   ENSSSCT00000031098
RefSeq Acc Id: ENSSSCP00000062181   ⟸   ENSSSCT00000081786
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000022668 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015038627 UniProtKB/TrEMBL
  ENSSSCG00025007185 UniProtKB/TrEMBL
  ENSSSCG00030070945 UniProtKB/TrEMBL
  ENSSSCG00035004091 UniProtKB/TrEMBL
  ENSSSCG00040066587 UniProtKB/TrEMBL
  ENSSSCG00045035963 UniProtKB/TrEMBL
  ENSSSCG00050070720 UniProtKB/TrEMBL
  ENSSSCG00055026745 UniProtKB/TrEMBL
  ENSSSCG00060020704 UniProtKB/TrEMBL
  ENSSSCG00065073817 UniProtKB/TrEMBL
  ENSSSCG00070004193 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000031098.4 UniProtKB/TrEMBL
  ENSSSCT00000081786 ENTREZGENE
  ENSSSCT00000081786.2 UniProtKB/TrEMBL
  ENSSSCT00015051349.1 UniProtKB/TrEMBL
  ENSSSCT00015051434.1 UniProtKB/TrEMBL
  ENSSSCT00025009552.1 UniProtKB/TrEMBL
  ENSSSCT00030099252.1 UniProtKB/TrEMBL
  ENSSSCT00030099262.1 UniProtKB/TrEMBL
  ENSSSCT00035005093.1 UniProtKB/TrEMBL
  ENSSSCT00035005096.1 UniProtKB/TrEMBL
  ENSSSCT00040090936.1 UniProtKB/TrEMBL
  ENSSSCT00045061785.1 UniProtKB/TrEMBL
  ENSSSCT00045061808.1 UniProtKB/TrEMBL
  ENSSSCT00050096444.1 UniProtKB/TrEMBL
  ENSSSCT00050096450.1 UniProtKB/TrEMBL
  ENSSSCT00055052872.1 UniProtKB/TrEMBL
  ENSSSCT00060028059.1 UniProtKB/TrEMBL
  ENSSSCT00065101644.1 UniProtKB/TrEMBL
  ENSSSCT00065101660.1 UniProtKB/TrEMBL
  ENSSSCT00070007884.1 UniProtKB/TrEMBL
  ENSSSCT00070007885.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report ssc:100622002 UniProtKB/TrEMBL
NCBI Gene ZFP1 ENTREZGENE
PANTHER GASTRULA ZINC FINGER PROTEIN XLCGF49.1-LIKE-RELATED UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  TRANSCRIPTIONAL REPRESSOR PROTEIN YY UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 2-LIKE-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 939 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A4X1SW48_PIG UniProtKB/TrEMBL
  A0A5G2QDG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NMB8_PIG UniProtKB/TrEMBL
  A0A8D1J2N4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RT25 ENTREZGENE, UniProtKB/TrEMBL
  I3LIM1_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95143 ENTREZGENE