Tmem44 (transmembrane protein 44) - Rat Genome Database

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Gene: Tmem44 (transmembrane protein 44) Rattus norvegicus
Analyze
Symbol: Tmem44
Name: transmembrane protein 44
RGD ID: 1563737
Description: Predicted to enable basic amino acid transmembrane transporter activity. Predicted to be involved in basic amino acid transmembrane transport. Predicted to be located in membrane. Orthologous to human TMEM44 (transmembrane protein 44); INTERACTS WITH 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC288028; RGD1563737; similar to transmembrane protein 44 isoform a
RGD Orthologs
Human
Mouse
Bonobo
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81183,685,191 - 83,725,254 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1183,686,015 - 83,721,859 (+)EnsemblGRCr8
mRatBN7.21170,181,120 - 70,216,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1170,181,345 - 70,216,958 (+)EnsemblmRatBN7.2
Rnor_6.01173,737,323 - 73,774,149 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1173,738,433 - 73,774,190 (+)Ensemblrn6Rnor6.0
Rnor_5.01176,804,772 - 76,841,838 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41172,062,805 - 72,084,750 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1141,344 - 78,077 (-)NCBICelera
Cytogenetic Map11q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Tmem44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81183,685,191 - 83,725,254 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1183,686,015 - 83,721,859 (+)EnsemblGRCr8
mRatBN7.21170,181,120 - 70,216,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1170,181,345 - 70,216,958 (+)EnsemblmRatBN7.2
Rnor_6.01173,737,323 - 73,774,149 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1173,738,433 - 73,774,190 (+)Ensemblrn6Rnor6.0
Rnor_5.01176,804,772 - 76,841,838 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41172,062,805 - 72,084,750 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1141,344 - 78,077 (-)NCBICelera
Cytogenetic Map11q22NCBI
TMEM44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383194,587,678 - 194,633,419 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3194,587,673 - 194,633,689 (-)Ensemblhg38GRCh38
GRCh373194,308,407 - 194,354,148 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363195,789,691 - 195,835,402 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343195,789,699 - 195,835,410NCBI
Celera3192,723,780 - 192,769,496 (-)NCBICelera
Cytogenetic Map3q29NCBI
HuRef3191,688,270 - 191,730,258 (-)NCBIHuRef
CHM1_13194,271,480 - 194,317,228 (-)NCBICHM1_1
T2T-CHM13v2.03197,286,279 - 197,332,050 (-)NCBIT2T-CHM13v2.0
Tmem44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391630,330,673 - 30,369,643 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1630,330,673 - 30,369,660 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381630,511,855 - 30,550,825 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1630,511,855 - 30,550,842 (-)Ensemblmm10GRCm38
MGSCv371630,511,941 - 30,550,664 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361630,437,477 - 30,470,286 (-)NCBIMGSCv36mm8
Celera1631,026,212 - 31,065,109 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1621.34NCBI
TMEM44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22192,511,524 - 192,557,550 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13192,509,109 - 192,562,272 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03191,884,561 - 191,930,151 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13202,194,972 - 202,240,836 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3202,194,972 - 202,240,836 (-)EnsemblpanPan2panpan1.1
Tmem44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602124,011,112 - 124,043,287 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936711203,499 - 240,140 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13131,578,857 - 131,613,767 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113131,578,848 - 131,613,780 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213141,180,240 - 141,215,183 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11588,684,000 - 88,725,527 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1588,684,866 - 88,725,187 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604162,372,626 - 62,414,276 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem44
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1415,446,714 - 15,481,987 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmem44
107 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:201
Count of miRNA genes:121
Interacting mature miRNAs:128
Transcripts:ENSRNOT00000002353, ENSRNOT00000073164, ENSRNOT00000074716, ENSRNOT00000074790
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)115893182292356038Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)118295102896351019Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 90 89 58 58 58 6 321 158 11 140 81 92 31 16 16

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001062650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000002353   ⟹   ENSRNOP00000002353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1183,686,015 - 83,721,859 (+)Ensembl
mRatBN7.2 Ensembl1170,181,345 - 70,216,926 (+)Ensembl
Rnor_6.0 Ensembl1173,738,433 - 73,774,190 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111708   ⟹   ENSRNOP00000077793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1170,183,519 - 70,216,737 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112608   ⟹   ENSRNOP00000077729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1170,183,519 - 70,216,958 (+)Ensembl
RefSeq Acc Id: XM_017598176   ⟹   XP_017453665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,615 - 83,725,254 (+)NCBI
mRatBN7.21170,181,125 - 70,216,958 (+)NCBI
Rnor_6.01173,737,324 - 73,774,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598177   ⟹   XP_017453666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,584 - 83,725,254 (+)NCBI
mRatBN7.21170,181,124 - 70,216,958 (+)NCBI
Rnor_6.01173,737,323 - 73,774,149 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088936   ⟹   XP_038944864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,610 - 83,725,254 (+)NCBI
mRatBN7.21170,181,125 - 70,216,958 (+)NCBI
RefSeq Acc Id: XM_039088937   ⟹   XP_038944865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,584 - 83,725,254 (+)NCBI
mRatBN7.21170,181,124 - 70,216,958 (+)NCBI
RefSeq Acc Id: XM_039088938   ⟹   XP_038944866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,541 - 83,716,292 (+)NCBI
mRatBN7.21170,181,120 - 70,213,254 (+)NCBI
RefSeq Acc Id: XM_039088939   ⟹   XP_038944867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,564 - 83,725,254 (+)NCBI
mRatBN7.21170,181,123 - 70,216,958 (+)NCBI
RefSeq Acc Id: XM_039088941   ⟹   XP_038944869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,574 - 83,716,292 (+)NCBI
mRatBN7.21170,181,124 - 70,211,387 (+)NCBI
RefSeq Acc Id: XM_039088942   ⟹   XP_038944870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,551 - 83,725,254 (+)NCBI
mRatBN7.21170,181,121 - 70,216,958 (+)NCBI
RefSeq Acc Id: XM_039088943   ⟹   XP_038944871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,585 - 83,725,254 (+)NCBI
mRatBN7.21170,181,124 - 70,216,958 (+)NCBI
RefSeq Acc Id: XM_039088944   ⟹   XP_038944872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,555 - 83,725,254 (+)NCBI
mRatBN7.21170,181,122 - 70,216,958 (+)NCBI
RefSeq Acc Id: XM_039088945   ⟹   XP_038944873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,561 - 83,725,254 (+)NCBI
mRatBN7.21170,181,122 - 70,216,958 (+)NCBI
RefSeq Acc Id: XM_039088946   ⟹   XP_038944874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,556 - 83,725,254 (+)NCBI
mRatBN7.21170,181,122 - 70,216,958 (+)NCBI
RefSeq Acc Id: XM_063270864   ⟹   XP_063126934
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81183,685,191 - 83,716,137 (+)NCBI
RefSeq Acc Id: XP_017453666   ⟸   XM_017598177
- Peptide Label: isoform X6
- UniProtKB: A6KTZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017453665   ⟸   XM_017598176
- Peptide Label: isoform X5
- UniProtKB: D4ADT4 (UniProtKB/TrEMBL),   A6KTY9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002353   ⟸   ENSRNOT00000002353
RefSeq Acc Id: XP_038944866   ⟸   XM_039088938
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038944870   ⟸   XM_039088942
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038944872   ⟸   XM_039088944
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038944873   ⟸   XM_039088945
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038944874   ⟸   XM_039088946
- Peptide Label: isoform X13
- UniProtKB: A6KTZ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944867   ⟸   XM_039088939
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038944871   ⟸   XM_039088943
- Peptide Label: isoform X10
- UniProtKB: A6KTZ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944865   ⟸   XM_039088937
- Peptide Label: isoform X3
- UniProtKB: A6KTZ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944869   ⟸   XM_039088941
- Peptide Label: isoform X8
- UniProtKB: A6KTZ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944864   ⟸   XM_039088936
- Peptide Label: isoform X2
- UniProtKB: A6KTZ0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077793   ⟸   ENSRNOT00000111708
Ensembl Acc Id: ENSRNOP00000077729   ⟸   ENSRNOT00000112608
RefSeq Acc Id: XP_063126934   ⟸   XM_063270864
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ADT4-F1-model_v2 AlphaFold D4ADT4 1-434 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698227
Promoter ID:EPDNEW_R8751
Type:initiation region
Name:Tmem44_1
Description:transmembrane protein 44
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01173,738,452 - 73,738,512EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563737 AgrOrtholog
BioCyc Gene G2FUF-21019 BioCyc
Ensembl Genes ENSRNOG00000001726 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002353 ENTREZGENE
  ENSRNOT00000002353.10 UniProtKB/TrEMBL
InterPro LAAT-1 UniProtKB/TrEMBL
KEGG Report rno:288028 UniProtKB/TrEMBL
NCBI Gene 288028 ENTREZGENE
PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 44 UniProtKB/TrEMBL
PhenoGen Tmem44 PhenoGen
RatGTEx ENSRNOG00000001726 RatGTEx
UniProt A6KTY9 ENTREZGENE, UniProtKB/TrEMBL
  A6KTZ0 ENTREZGENE, UniProtKB/TrEMBL
  A6KTZ3 ENTREZGENE, UniProtKB/TrEMBL
  D4ADT4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Tmem44  transmembrane protein 44  RGD1563737_predicted  similar to transmembrane protein 44 isoform a (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563737_predicted  similar to transmembrane protein 44 isoform a (predicted)  LOC288028  similar to transmembrane protein 44 isoform a  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC288028  similar to transmembrane protein 44 isoform a      Symbol and Name status set to provisional 70820 PROVISIONAL