Fbxl2 (F-box and leucine-rich repeat protein 2) - Rat Genome Database

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Gene: Fbxl2 (F-box and leucine-rich repeat protein 2) Rattus norvegicus
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Symbol: Fbxl2
Name: F-box and leucine-rich repeat protein 2
RGD ID: 1562243
Description: Predicted to enable phosphatidylinositol 3-kinase regulatory subunit binding activity; protein phosphatase binding activity; and ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in several processes, including SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; protein ubiquitination; and regulation of intracellular signal transduction. Predicted to act upstream of or within protein monoubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL2 (F-box and leucine rich repeat protein 2); INTERACTS WITH 2,4,6-trinitrobenzenesulfonic acid; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: F-box/LRR-repeat protein 2; LOC363156; RGD1562243; similar to F-box and leucine-rich repeat protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88122,794,870 - 122,843,265 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8122,794,870 - 122,854,798 (-)EnsemblGRCr8
mRatBN7.28113,916,660 - 113,965,137 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8113,913,373 - 113,965,066 (-)EnsemblmRatBN7.2
Rnor_6.08122,240,393 - 122,290,439 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,243,016 - 122,311,431 (-)Ensemblrn6Rnor6.0
Rnor_5.08121,554,708 - 121,603,927 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48118,621,502 - 118,669,052 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8113,162,143 - 113,212,326 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA,ISO)
plasma membrane  (IEA,ISO)
SCF ubiquitin ligase complex  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15893726   PMID:21343341   PMID:23604317   PMID:26674878  


Genomics

Comparative Map Data
Fbxl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88122,794,870 - 122,843,265 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8122,794,870 - 122,854,798 (-)EnsemblGRCr8
mRatBN7.28113,916,660 - 113,965,137 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8113,913,373 - 113,965,066 (-)EnsemblmRatBN7.2
Rnor_6.08122,240,393 - 122,290,439 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,243,016 - 122,311,431 (-)Ensemblrn6Rnor6.0
Rnor_5.08121,554,708 - 121,603,927 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48118,621,502 - 118,669,052 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8113,162,143 - 113,212,326 (-)NCBICelera
Cytogenetic Map8q32NCBI
FBXL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38333,277,025 - 33,422,698 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl333,277,025 - 33,403,662 (+)Ensemblhg38GRCh38
GRCh37333,318,517 - 33,464,190 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36333,293,938 - 33,403,129 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34333,293,937 - 33,403,121NCBI
Celera333,262,399 - 33,372,286 (+)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef333,259,441 - 33,369,309 (+)NCBIHuRef
CHM1_1333,268,994 - 33,378,729 (+)NCBICHM1_1
T2T-CHM13v2.0333,278,817 - 33,424,454 (+)NCBIT2T-CHM13v2.0
Fbxl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399113,787,625 - 113,855,871 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9113,792,705 - 113,875,259 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm389113,958,557 - 114,026,803 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9113,963,637 - 114,046,191 (-)Ensemblmm10GRCm38
MGSCv379113,886,076 - 113,935,869 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369113,825,656 - 113,875,449 (-)NCBIMGSCv36mm8
Celera9113,686,095 - 113,734,801 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map964.17NCBI
Fbxl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955421512,158 - 617,524 (+)Ensembl
ChiLan1.0NW_004955421512,197 - 617,524 (+)NCBIChiLan1.0ChiLan1.0
FBXL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2233,256,595 - 33,365,985 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1333,261,360 - 33,370,750 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0333,199,436 - 33,308,831 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1333,501,519 - 33,646,074 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl333,501,525 - 33,610,039 (+)EnsemblpanPan2panpan1.1
FBXL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1233,498,253 - 3,606,016 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl233,498,979 - 3,607,093 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha233,541,659 - 3,650,996 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0233,750,529 - 3,868,136 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl233,749,200 - 3,868,361 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,592,258 - 3,701,543 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,719,289 - 3,828,653 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,692,819 - 3,802,389 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fbxl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118190,428,643 - 190,520,703 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647323,567,230 - 23,658,240 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647323,567,251 - 23,659,708 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1319,128,237 - 19,221,201 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11319,128,145 - 19,206,458 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FBXL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,769,424 - 77,895,994 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,769,748 - 77,878,340 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604151,150,472 - 51,278,268 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478811,253,934 - 11,349,137 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478811,253,912 - 11,350,045 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fbxl2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v18104,842,614 - 104,891,172 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fbxl2
204 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:37
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000033126
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
D8Got178  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28113,974,178 - 113,974,319 (+)MAPPERmRatBN7.2
Rnor_6.08122,309,023 - 122,309,163NCBIRnor6.0
Rnor_5.08121,621,877 - 121,622,017UniSTSRnor5.0
RGSC_v3.48118,678,708 - 118,678,848RGDRGSC3.4
RGSC_v3.48118,678,709 - 118,678,849UniSTSRGSC3.4
Celera8113,221,389 - 113,221,529UniSTS
RGSC_v3.18118,698,163 - 118,698,303RGD
RH 3.4 Map81202.1UniSTS
RH 3.4 Map81202.1RGD
RH 2.0 Map8955.6RGD
Cytogenetic Map8q32UniSTS
BF412611  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28113,922,884 - 113,923,106 (+)MAPPERmRatBN7.2
Rnor_6.08122,248,627 - 122,248,848NCBIRnor6.0
Rnor_5.08121,562,157 - 121,562,378UniSTSRnor5.0
RGSC_v3.48118,626,927 - 118,627,148UniSTSRGSC3.4
Celera8113,170,375 - 113,170,596UniSTS
RH 3.4 Map81198.6UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 65 161 85 84 53 78 53 6 332 176 11 140 79 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000033126   ⟹   ENSRNOP00000033447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8122,794,870 - 122,843,292 (-)Ensembl
mRatBN7.2 Ensembl8113,913,373 - 113,965,066 (-)Ensembl
Rnor_6.0 Ensembl8122,243,016 - 122,311,431 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000140056   ⟹   ENSRNOP00000106334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8122,794,870 - 122,843,459 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000144798   ⟹   ENSRNOP00000099530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8122,794,870 - 122,854,798 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000164342   ⟹   ENSRNOP00000112268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8122,794,870 - 122,832,074 (-)Ensembl
RefSeq Acc Id: NM_001427212   ⟹   NP_001414141
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,794,870 - 122,843,265 (-)NCBI
RefSeq Acc Id: XM_039082672   ⟹   XP_038938600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,794,870 - 122,843,246 (-)NCBI
mRatBN7.28113,916,660 - 113,965,061 (-)NCBI
RefSeq Acc Id: XM_039082673   ⟹   XP_038938601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,797,676 - 122,843,253 (-)NCBI
mRatBN7.28113,922,205 - 113,965,061 (-)NCBI
RefSeq Acc Id: XM_039082674   ⟹   XP_038938602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88122,797,676 - 122,843,252 (-)NCBI
mRatBN7.28113,922,205 - 113,965,061 (-)NCBI
Ensembl Acc Id: ENSRNOP00000033447   ⟸   ENSRNOT00000033126
RefSeq Acc Id: XP_038938600   ⟸   XM_039082672
- Peptide Label: isoform X1
- UniProtKB: A6I3N0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938601   ⟸   XM_039082673
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038938602   ⟸   XM_039082674
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001414141   ⟸   NM_001427212
- UniProtKB: A6I3M9 (UniProtKB/TrEMBL),   F1M768 (UniProtKB/TrEMBL),   A6I3N0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000099530   ⟸   ENSRNOT00000144798
Ensembl Acc Id: ENSRNOP00000112268   ⟸   ENSRNOT00000164342
Ensembl Acc Id: ENSRNOP00000106334   ⟸   ENSRNOT00000140056
Protein Domains
F-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M768-F1-model_v2 AlphaFold F1M768 1-438 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562243 AgrOrtholog
BioCyc Gene G2FUF-28935 BioCyc
Ensembl Genes ENSRNOG00000027099 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033126.8 UniProtKB/TrEMBL
  ENSRNOT00000140056 ENTREZGENE
  ENSRNOT00000140056.1 UniProtKB/TrEMBL
  ENSRNOT00000144798 ENTREZGENE
  ENSRNOT00000144798.1 UniProtKB/TrEMBL
  ENSRNOT00000164342.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro F-box_dom_cyclin-like UniProtKB/TrEMBL
  F-box_LRR-repeat UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_Cys-con_subtyp UniProtKB/TrEMBL
NCBI Gene 363156 ENTREZGENE
PANTHER F-BOX DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  F-BOX_LRR-REPEAT PROTEIN 20 UniProtKB/TrEMBL
  MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  LRR_6 UniProtKB/TrEMBL
PhenoGen Fbxl2 PhenoGen
PROSITE FBOX UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027099 RatGTEx
SMART FBOX UniProtKB/TrEMBL
  LRR_CC UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A0ABK0L7V5_RAT UniProtKB/TrEMBL
  A0ABK0LE43_RAT UniProtKB/TrEMBL
  A0ABK0M4R1_RAT UniProtKB/TrEMBL
  A6I3M9 ENTREZGENE, UniProtKB/TrEMBL
  A6I3N0 ENTREZGENE, UniProtKB/TrEMBL
  F1M768 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-22 Fbxl2  F-box and leucine-rich repeat protein 2  RGD1562243_predicted  similar to F-box and leucine-rich repeat protein 2 (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562243_predicted  similar to F-box and leucine-rich repeat protein 2 (predicted)  LOC363156  similar to F-box and leucine-rich repeat protein 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363156  similar to F-box and leucine-rich repeat protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL