Kash5 (KASH domain containing 5) - Rat Genome Database

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Gene: Kash5 (KASH domain containing 5) Rattus norvegicus
Analyze
Symbol: Kash5
Name: KASH domain containing 5
RGD ID: 1561972
Description: Predicted to enable dynein complex binding activity and identical protein binding activity. Predicted to be involved in several processes, including cytoskeleton organization; homologous chromosome segregation; and spindle localization. Predicted to act upstream of or within several processes, including double-strand break repair via homologous recombination; meiotic telomere clustering; and spermatogenesis. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in chromosome; meiotic spindle pole; and nuclear outer membrane. Human ortholog(s) of this gene implicated in primary ovarian insufficiency and spermatogenic failure 88. Orthologous to human KASH5 (KASH domain containing 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; paracetamol; PCB138.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ccdc155; Ccdc155-ps1; coiled-coil domain containing 155; coiled-coil domain containing 155, pseudogene 1; LOC308581; RGD1561972; similar to hypothetical protein FLJ32658
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,805,248 - 104,827,720 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1104,804,535 - 104,827,802 (-)EnsemblGRCr8
mRatBN7.2195,668,918 - 95,691,353 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,668,886 - 95,691,368 (-)EnsemblmRatBN7.2
Rnor_6.01101,180,497 - 101,203,048 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,180,657 - 101,198,801 (-)Ensemblrn6Rnor6.0
Rnor_5.01102,245,370 - 102,267,683 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4195,660,143 - 95,681,984 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera189,927,287 - 89,949,915 (-)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22826121   PMID:24062341   PMID:25892231   PMID:26842404  


Genomics

Comparative Map Data
Kash5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,805,248 - 104,827,720 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1104,804,535 - 104,827,802 (-)EnsemblGRCr8
mRatBN7.2195,668,918 - 95,691,353 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,668,886 - 95,691,368 (-)EnsemblmRatBN7.2
Rnor_6.01101,180,497 - 101,203,048 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,180,657 - 101,198,801 (-)Ensemblrn6Rnor6.0
Rnor_5.01102,245,370 - 102,267,683 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4195,660,143 - 95,681,984 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera189,927,287 - 89,949,915 (-)NCBICelera
Cytogenetic Map1q22NCBI
KASH5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,388,249 - 49,417,990 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,388,219 - 49,417,990 (+)Ensemblhg38GRCh38
GRCh371949,891,506 - 49,921,247 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,583,318 - 54,613,058 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1946,759,093 - 46,788,876 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,268,082 - 46,297,866 (+)NCBIHuRef
CHM1_11949,893,262 - 49,923,194 (+)NCBICHM1_1
T2T-CHM13v2.01952,385,679 - 52,415,421 (+)NCBIT2T-CHM13v2.0
Kash5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,833,043 - 44,854,344 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,833,048 - 44,854,316 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38745,183,619 - 45,204,919 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,183,624 - 45,204,892 (-)Ensemblmm10GRCm38
MGSCv37752,439,046 - 52,460,262 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36745,051,718 - 45,072,934 (-)NCBIMGSCv36mm8
Celera740,639,569 - 40,660,783 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.17NCBI
Kash5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555591,416,844 - 1,438,451 (-)NCBIChiLan1.0ChiLan1.0
KASH5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,504,624 - 55,535,099 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,425,736 - 57,455,406 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,402,586 - 46,432,002 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,325,640 - 55,353,721 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,325,640 - 55,353,721 (+)EnsemblpanPan2panpan1.1
KASH5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,074,010 - 107,114,460 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,074,010 - 107,097,762 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1106,657,279 - 106,681,125 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01107,594,087 - 107,617,939 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,594,087 - 107,617,934 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,267,073 - 107,290,886 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,909,642 - 106,933,428 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,750,294 - 107,774,134 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Kash5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,655,156 - 21,680,810 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,275,669 - 3,297,605 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,268,824 - 3,300,689 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KASH5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,477,058 - 54,500,887 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1654,476,989 - 54,501,099 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,205,478 - 50,230,015 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KASH5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,561,606 - 42,599,442 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607322,496,832 - 22,527,316 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kash5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,783,766 - 4,803,325 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248324,783,593 - 4,806,025 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Kash5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12154,334,927 - 154,358,328 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Kash5
267 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:52
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000037998
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1101228864146228864Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1102359314153680016Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)197582336142582336Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1101594089146594089Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1100345976145345976Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 12 67 161 91 90 59 92 59 6 342 192 11 139 68 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001432239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005494387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000037998   ⟹   ENSRNOP00000037916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,805,389 - 104,827,802 (-)Ensembl
mRatBN7.2 Ensembl195,668,886 - 95,691,368 (-)Ensembl
Rnor_6.0 Ensembl1101,180,657 - 101,198,801 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000138492   ⟹   ENSRNOP00000101435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,804,535 - 104,827,802 (-)Ensembl
RefSeq Acc Id: XM_006229199   ⟹   XP_006229261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,805,384 - 104,827,720 (-)NCBI
mRatBN7.2195,668,918 - 95,691,349 (-)NCBI
Rnor_6.01101,180,497 - 101,203,048 (-)NCBI
Rnor_5.01102,245,370 - 102,267,683 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094057   ⟹   XP_038949985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,805,384 - 104,827,720 (-)NCBI
mRatBN7.2195,668,926 - 95,691,351 (-)NCBI
RefSeq Acc Id: XM_063278191   ⟹   XP_063134261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,805,248 - 104,827,720 (-)NCBI
RefSeq Acc Id: XM_063278194   ⟹   XP_063134264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,805,248 - 104,827,720 (-)NCBI
RefSeq Acc Id: XM_063278198   ⟹   XP_063134268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,805,248 - 104,827,520 (-)NCBI
RefSeq Acc Id: XM_063278201   ⟹   XP_063134271
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,805,248 - 104,827,717 (-)NCBI
RefSeq Acc Id: XM_063278212   ⟹   XP_063134282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,805,248 - 104,816,186 (-)NCBI
RefSeq Acc Id: XM_063278223   ⟹   XP_063134293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,805,248 - 104,816,186 (-)NCBI
RefSeq Acc Id: XR_005494382
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,807,044 - 104,827,720 (-)NCBI
mRatBN7.2195,670,601 - 95,691,351 (-)NCBI
RefSeq Acc Id: XR_005494386
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,811,060 - 104,827,720 (-)NCBI
mRatBN7.2195,674,602 - 95,691,352 (-)NCBI
RefSeq Acc Id: XR_005494387
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,810,606 - 104,827,720 (-)NCBI
mRatBN7.2195,674,148 - 95,691,353 (-)NCBI
RefSeq Acc Id: XP_006229261   ⟸   XM_006229199
- Peptide Label: isoform X5
- Sequence:
Ensembl Acc Id: ENSRNOP00000037916   ⟸   ENSRNOT00000037998
RefSeq Acc Id: XP_038949985   ⟸   XM_039094057
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063134264   ⟸   XM_063278194
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063134261   ⟸   XM_063278191
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063134271   ⟸   XM_063278201
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063134268   ⟸   XM_063278198
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063134293   ⟸   XM_063278223
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063134282   ⟸   XM_063278212
- Peptide Label: isoform X7
Ensembl Acc Id: ENSRNOP00000101435   ⟸   ENSRNOT00000138492

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZPX3-F1-model_v2 AlphaFold D3ZPX3 1-613 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561972 AgrOrtholog
BioCyc Gene G2FUF-59704 BioCyc
Ensembl Genes ENSRNOG00000025378 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037998 ENTREZGENE
  ENSRNOT00000037998.8 UniProtKB/TrEMBL
  ENSRNOT00000138492 ENTREZGENE
  ENSRNOT00000138492.1 UniProtKB/TrEMBL
InterPro KASH5 UniProtKB/TrEMBL
  KASH5_coiled-coil UniProtKB/TrEMBL
  KASH5_EF-hand-like_dom UniProtKB/TrEMBL
KEGG Report rno:308581 UniProtKB/TrEMBL
NCBI Gene 308581 ENTREZGENE
PANTHER PROTEIN KASH5 UniProtKB/TrEMBL
  PTHR47300 UniProtKB/TrEMBL
Pfam CCDC155 UniProtKB/TrEMBL
  EF-hand_9 UniProtKB/TrEMBL
PhenoGen Kash5 PhenoGen
RatGTEx ENSRNOG00000025378 RatGTEx
UniProt A0ABK0LKL2_RAT UniProtKB/TrEMBL
  D3ZPX3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-13 Kash5  KASH domain containing 5  Ccdc155  coiled-coil domain containing 155  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-03-05 Ccdc155  coiled-coil domain containing 155  Ccdc155-ps1  coiled-coil domain containing 155, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-06-07 Ccdc155-ps1  coiled-coil domain containing 155, pseudogene 1  Ccdc155  coiled-coil domain containing 155  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Ccdc155  coiled-coil domain containing 155  RGD1561972  similar to hypothetical protein FLJ32658   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1561972  similar to hypothetical protein FLJ32658   RGD1561972_predicted  similar to hypothetical protein FLJ32658 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561972_predicted  similar to hypothetical protein FLJ32658 (predicted)  LOC308581  similar to hypothetical protein FLJ32658  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC308581  similar to hypothetical protein FLJ32658      Symbol and Name status set to provisional 70820 PROVISIONAL