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Gene: Map3k13 (mitogen-activated protein kinase kinase kinase 13) Rattus norvegicus

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Symbol:

Map3k13

Name:

mitogen-activated protein kinase kinase kinase 13

RGD ID:

1561227

Description:

Predicted to enable several functions, including IkappaB kinase complex binding activity; MAP kinase kinase kinase activity; and protein homodimerization activity. Predicted to be involved in several processes, including MAPK cascade; positive regulation of branching morphogenesis of a nerve; and positive regulation of cell projection organization. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to human MAP3K13 (mitogen-activated protein kinase kinase kinase 13); PARTICIPATES IN c-Jun N-terminal kinases MAPK signaling pathway; mitogen activated protein kinase signaling pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

leucine zipper-bearing kinase; LOC303823; similar to mitogen-activated protein kinase kinase kinase 13

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	92,596,436 - 92,741,717 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	92,601,738 - 92,739,663 (-)	Ensembl				GRCr8
mRatBN7.2	11	79,094,087 - 79,235,181 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	79,097,247 - 79,235,181 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	87,832,392 - 87,971,900 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	80,486,036 - 80,625,546 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	79,546,735 - 79,686,246 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	82,744,391 - 82,938,357 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	82,745,735 - 82,938,357 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	85,830,850 - 85,865,109 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	81,327,515 - 81,467,415 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	77,956,031 - 78,091,697 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastroesophageal adenocarcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

antirheumatic drug (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (EXP,ISO)

chlorpyrifos (ISO)

clofibrate (EXP,ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

D-glucose (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

disulfiram (ISO)

diuron (ISO)

endosulfan (EXP)

ethanol (ISO)

fenofibrate (EXP)

folic acid (ISO)

fucoxanthin (ISO)

glucose (ISO)

glyphosate (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

Nor-9-carboxy-delta9-THC (ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (EXP,ISO)

pirinixic acid (EXP,ISO)

pregnenolone 16alpha-carbonitrile (EXP,ISO)

quercetin (ISO)

resorcinol (ISO)

rotenone (EXP)

sertraline (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

thapsigargin (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valproic acid (ISO)

zinc sulfate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

intracellular signal transduction (IEA)

JNK cascade (IBA,IEA,ISO)

positive regulation of axon extension (IEA,ISO)

positive regulation of branching morphogenesis of a nerve (IEA,ISO)

positive regulation of canonical NF-kappaB signal transduction (IEA,ISO)

positive regulation of neuron maturation (IEA,ISO)

positive regulation of neuron projection arborization (IEA,ISO)

stress-activated MAPK cascade (IBA,IEA,ISO)

Cellular Component

cytoplasm (IBA,IEA)

membrane (IEA,ISO)

Molecular Function

ATP binding (IEA)

enzyme binding (IEA,ISO)

identical protein binding (IEA,ISO)

IkappaB kinase complex binding (IEA,ISO)

kinase activity (IEA)

MAP kinase kinase kinase activity (IEA,ISO)

metal ion binding (IEA)

nucleotide binding (IEA)

protein binding (ISO)

protein homodimerization activity (IEA,ISO)

protein kinase activity (IEA)

protein serine/threonine kinase activator activity (IEA,ISO)

protein serine/threonine kinase activity (IBA,IEA,ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

c-Jun N-terminal kinases MAPK signaling pathway (ISO)

mitogen activated protein kinase signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Integrated genomic profiling and modelling for risk stratification in patients with advanced oesophagogastric adenocarcinoma.	Hao D, etal., Gut. 2021 Nov;70(11):2055-2065. doi: 10.1136/gutjnl-2020-322707. Epub 2020 Dec 17.
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:9353328	PMID:11163770	PMID:11726277	PMID:12492477	PMID:14690535	PMID:27511108

Genomics

Comparative Map Data

Map3k13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	92,596,436 - 92,741,717 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	92,601,738 - 92,739,663 (-)	Ensembl				GRCr8
mRatBN7.2	11	79,094,087 - 79,235,181 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	79,097,247 - 79,235,181 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	87,832,392 - 87,971,900 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	80,486,036 - 80,625,546 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	79,546,735 - 79,686,246 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	82,744,391 - 82,938,357 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	82,745,735 - 82,938,357 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	85,830,850 - 85,865,109 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	81,327,515 - 81,467,415 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	77,956,031 - 78,091,697 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

MAP3K13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	185,282,961 - 185,489,094 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	185,282,941 - 185,489,094 (+)	Ensembl			hg38	GRCh38
GRCh37	3	185,000,749 - 185,206,882 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	186,563,664 - 186,683,322 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	186,563,671 - 186,683,329	NCBI
Celera	3	183,526,871 - 183,646,121 (+)	NCBI		Celera
Cytogenetic Map	3	q27.2	NCBI
HuRef	3	182,410,418 - 182,616,479 (+)	NCBI		HuRef
CHM1_1	3	184,963,400 - 185,169,890 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	188,098,494 - 188,304,852 (+)	NCBI		T2T-CHM13v2.0

Map3k13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	21,643,923 - 21,752,189 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	21,613,096 - 21,752,189 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	21,824,056 - 21,933,439 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	21,794,346 - 21,933,439 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	21,892,042 - 21,931,950 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	21,805,952 - 21,846,450 (+)	NCBI		MGSCv36	mm8
Celera	16	22,459,094 - 22,498,899 (+)	NCBI		Celera
Cytogenetic Map	16	B1	NCBI
cM Map	16	12.92	NCBI

Map3k13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	22,064,384 - 22,224,789 (-)	Ensembl
ChiLan1.0	NW_004955420	22,064,384 - 22,190,662 (-)	NCBI	ChiLan1.0	ChiLan1.0

MAP3K13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	183,158,285 - 183,361,330 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	183,163,002 - 183,366,047 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	182,319,405 - 182,517,655 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	190,875,284 - 190,993,633 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	190,798,694 - 190,993,633 (+)	Ensembl			panPan2	panpan1.1

MAP3K13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	18,081,158 - 18,252,800 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	18,083,595 - 18,247,367 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	22,196,773 - 22,338,512 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	18,019,990 - 18,159,874 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	17,990,427 - 18,159,873 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	18,055,958 - 18,195,550 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	18,051,916 - 18,191,465 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	18,281,506 - 18,423,763 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Map3k13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	118,272,160 - 118,441,123 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936578	4,368,900 - 4,532,966 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936578	4,363,361 - 4,461,133 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MAP3K13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	123,176,188 - 123,352,775 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	123,176,077 - 123,357,551 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	132,865,708 - 132,904,013 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MAP3K13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	3,947,464 - 4,135,554 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	3,947,851 - 4,138,194 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	12,707,320 - 12,900,766 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Map3k13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	71,161,646 - 71,312,442 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	71,162,598 - 71,313,369 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Map3k13
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	6,502,581 - 6,612,915 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	39
Count of miRNA genes:	33
Interacting mature miRNAs:	36
Transcripts:	ENSRNOT00000035945
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70208	Niddm22	Non-insulin dependent diabetes mellitus QTL 22	3.61		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	73308487	96070872	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	58928336	99753367	Rat
1549848	Bvd6	Brain ventricular dilatation QTL 6	3.1	0.0001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	79618519	99753367	Rat
10450831	Scl80	Serum cholesterol level QTL 80	4.7	0.01	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	11	90461781	96556255	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	73850894	99753367	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	54415391	96071021	Rat
1354656	Bvd3	Brain ventricular dilatation QTL 3	3.64	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	82951028	96351019	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	57754837	96071021	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	67962184	99753367	Rat
631506	Bp104	Blood pressure QTL 104	2.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	73308315	99753367	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	68599321	96497754	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	69855943	99753367	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	51071021	96071021	Rat

Markers in Region

AW523989

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	79,219,459 - 79,219,629 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	82,921,374 - 82,921,543	NCBI	Rnor6.0
Rnor_5.0	11	86,001,073 - 86,001,242	UniSTS	Rnor5.0
RGSC_v3.4	11	81,451,695 - 81,451,864	UniSTS	RGSC3.4
Celera	11	78,075,987 - 78,076,156	UniSTS
RH 3.4 Map	11	654.4	UniSTS
Cytogenetic Map	11	q23	UniSTS

BE121163

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	79,218,441 - 79,218,598 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	82,920,356 - 82,920,512	NCBI	Rnor6.0
Rnor_5.0	11	86,000,055 - 86,000,211	UniSTS	Rnor5.0
RGSC_v3.4	11	81,450,677 - 81,450,833	UniSTS	RGSC3.4
Celera	11	78,074,969 - 78,075,125	UniSTS
RH 3.4 Map	11	653.0	UniSTS
Cytogenetic Map	11	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	80	59	6	344	180	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001443859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_201319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY240865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035945 ⟹ ENSRNOP00000038786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	92,601,738 - 92,739,663 (-)	Ensembl
mRatBN7.2 Ensembl	11	79,097,247 - 79,235,181 (-)	Ensembl
Rnor_6.0 Ensembl	11	82,747,538 - 82,938,357 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078072 ⟹ ENSRNOP00000072235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	11	82,745,735 - 82,783,328 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083539 ⟹ ENSRNOP00000071097

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	92,613,627 - 92,664,448 (-)	Ensembl
mRatBN7.2 Ensembl	11	79,109,137 - 79,159,961 (-)	Ensembl
Rnor_6.0 Ensembl	11	82,759,284 - 82,810,014 (-)	Ensembl

RefSeq Acc Id:

NM_001013978 ⟹ NP_001014000

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	92,601,738 - 92,739,663 (-)	NCBI
mRatBN7.2	11	79,097,247 - 79,235,181 (-)	NCBI
Rnor_6.0	11	82,747,538 - 82,938,357 (-)	NCBI
Rnor_5.0	11	85,830,850 - 85,865,109 (-)	NCBI
RGSC_v3.4	11	81,327,515 - 81,467,415 (-)	RGD
Celera	11	77,956,031 - 78,091,697 (-)	RGD

Sequence:

show sequence

GGGGTTGCGCTGGGTCGGGTGTCCAGCGCTGTCGCAGGAGCGCCTTGAGAAAGCTTGCGGTCGT
GCGAACTCGGCTTCGGGCCGAGAACTTAGAATTTTGCAGAACCCTGCTGCTACCTATGCAGTCT
GCCATGGATACCGTGTAAAGAAACCCTGGATGCAGTAACGGACAAAACATGAGTCAATTTGTGT
TGTGGCCCTCAGATCCTAACACACCGGGAGAGGTTTTGGAGTCCTCTCTTGCATCAAACCTGTG
TCTCCGTAGTCCTCTGACCGTCATCTCGGGACCTGGGTCACCCTCATGGCACAATGGCCAACCC
TCAGGAGCACCTGAGCTGCTCCTCTTTGCCACACTTGCCCTTGACTGAGAACAAAATCTCTGGT
GGACGAAATGAGCTTGCGGCTATGGGGAACCACCCTTCCCCCAAGTTCCCTGAGGACTCGCAGG
AGAGGGTGGTGGCTATACAGTCAGAGCTGACGGAGATCACGGGCAGCCCGGTCTCCACAACAGT
GCTGACCAGTGTAAGCGAAGATTCCAGGAGCCAGTTTGAGAACAGTGTCCTTCAGCTAAGGGAA
CAGGACGAATCAGAGGTGACCGTATCTCCAGGGAACAGCAACACCGTGGATGGAGAGAACACGA
ACGGACCTGAAGACATCAAGATCCAGTTCAGCAGGTCAGGCAGCGGCAGCGGTGGGTTTCTCGA
AGGACTCTTTGGTTGCCTCAGGCCCGTGTGGAACATCATCGGGAAGGCGTACTCCACGGATTAC
AAACTGCAGCAGCAAGACACTTGGGAAGTGCCGTTTGAGGAAATCTCAGAGCTGCAGTGGCTGG
GTAGTGGAGCCCAGGGAGCCGTCTTCCTGGGCAAATTCCGAGCAGAGGAGGTGGCCATCAAGAA
GGTGAGAGAGCAGAATGAGACGGACATCAAGCATCTGAGGAAGCTGAAGCACCCTAACATCATC
GCCTTCAAGGGCGTTTGCACTCAGGCCCCGTGCTACTGCATCATCATGGAGTACTGTGCCCACG
GACAGCTGTACGAGGTCCTGAGGGCCGGCAGGAAGATCACGCCCCGGCTGCTCGTGGACTGGTC
CACGGGGATCGCCAGTGGAATGAATTACCTCCATCTCCATAAGATTATACATCGAGATCTCAAG
TCGCCCAATGTTTTAGTGACTCACACAGATGCAGTGAAAATTTCAGACTTTGGCACATCTAAGG
AACTCAGTGATAAAAGCACCAAGATGTCCTTTGCTGGCACCGTTGCGTGGATGGCACCTGAGGT
GATCCGGAATGAGCCTGTCTCTGAGAAGGTTGACATATGGTCGTTTGGAGTCGTGCTTTGGGAG
CTGCTGACAGGGGAGATCCCCTACAAGGACGTGGACTCATCAGCCATCATTTGGGGTGTTGGCA
GCAATAGCTTGCACCTCCCGGTTCCTTCCACTTGCCCAGACGGATTCAAAATCCTTATGAAACA
GACGTGGCAGAGTAAGCCTCGAAACCGGCCTTCTTTCCGGCAGACACTCATGCATCTGGACATT
GCCTCTGCAGATGTGCTTGCCACCCCTCAAGAAACGTACTTCAAGTCTCAGGCTGAATGGAGAG
AAGAAGTGAAAAAACATTTCGAGAAAATCAAAAGTGAAGGGACCTGTATTCATCGATTAGATGA
AGAACTGATTCGTCGCCGCAGGGAGGAGCTCAGGCATGCCCTGGATATTCGAGAGCACTATGAG
AGGAAGCTCGAGCGGGCTAACAATCTGTACATGGAGCTGAGCGCCATCATGCTGCAGCTGGAGA
TGCGGGAGAAGGAGCTCCTCAAGCGAGAGCAAGCAGTGGAAAAGAAGTATCCTGGGACCTACAA
GCGACACCCTGTCCGTCCAATCATCCACCCCAATGCCATGGAGAAGCTCATGAAAAGGAAGGTT
GTGTCTCACAAGGCTGGTGTACAGACTAAGCGGCCAGACCTGTTGCGATCCGAAGGCATCCCTA
GTACAGAAGCAGTTCCCACTGCATCCCCTCTGTCTGGAAGTCCCAAAATGTCCACCGGAAGCAG
CAGGAGCCGGTACCGAAGCAAACCACGTCACCGCCGAGGGAACAGTAGAGGCAGCCATAGTGAC
TTCGCAGCAATCTTGAAAACCCAGCCTGCCCAGGAAAATTCACCCCACCCCACCTACCTACAGC
ACACTCAGGCTCAGTGCCCTTCTGCCTATCAACATAATCTTCCCCAGCAGCAAGTCCCTCCTCC
CCTGCCTCAGAGCCGCCATCCCAGACTCAATGCGCATGGGCAGGACATTGCGACCTGCGCCAAT
AACCTGAGGTACTTCGGCCCAGCAGCAGCCCTGCGGAGTCCACTCAGCAACCACGCTCAAAGAC
AGATGCCTGGCTCTAGTCCCGACCTCATCTCCACAGCCATGGCAGCAGATTGTTGGAGAAATTC
TGAACTTGACCAAGACCAAGTCGGACCCTGGGGCTGTTGTCAGGCTGAACCCTATGATCCCTGT
TTCCAGTGCAGGCCAGAACATTCTGGGTCCTTAGATGTTCCCACCACTGAGCCAGTGGGGAGGA
GCCCAGACCCTTCCAGTTCACCAGCACACAATCCTCTTTCAGGAAATGCCCAAGGCTCTGAGAG
AACGGAGGCAAATGGATTCAATGGCTGTCAGTCTGGTATTTCTCATCAATTCACACCCCCATTG
CTACCTCAAAAGCCACGGCCCCTTCAGAAGAGTGGAGATGACTCCTCAGAAGAGGAAGGAGAAG
TGGACAGTGAAGTAGAATTTCCTCGACGACAGAGGCCTCACCGTTGCATTAGTAGTTACCAGTC
GTACTCAACCTTTAGCTCCGAGAACTTCTCTGTGTCTGATGGAGAGGAGGGTAACACTAGCGAC
CACTCCAACAGTCCGGATGAGTCGGCCAACAGACGGCAGGACCGCCTGGCAGAGACGCTGGACG
ACCTGCTGTCCCAGACACCAGAGGCCCCCATCGAGATCTCCTCCCACTCGGATGGGCTGTCTGA
CAAGGAGTGTGCCGTACGGCGTGTGAAGACACAGATGTCCCTTGGCAAGCTGTGTGCTGAGGAG
CGCGGCTACGAGAACCCCGTGCAGTTTGCAGACTCGGACCGCGACTCTTCAGAGGGGGACTGCT
CTGATGCCACAGTTAGGACCAGCAAGAACTACAGCTCTGCCACCTGGTGACCACAGCTCACTCG
GCTCCAGCAATAGACCCCTCCCTCGTTCATCCGTCTGGGAGGCGTGGCAGGAACATGAGACTCG
TCAAACCTCTGGGAAAACACCCAGAAGACACTGCGTCTCACGGAGCATTTCAATCAAGAATGGC
AGGGATCTATTGTACTGAGTACGCCAACTACTGTAACATTGATATTTATTTTTGTTGGACATTT
TAACACTTTGTATTGTAAAGAGTGAACTATATATGATACAGACACAATAATTTCTTTAC

hide sequence

RefSeq Acc Id:

XM_017597976 ⟹ XP_017453465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	92,596,436 - 92,687,769 (-)	NCBI
mRatBN7.2	11	79,094,087 - 79,183,328 (-)	NCBI
Rnor_6.0	11	82,744,391 - 82,833,687 (-)	NCBI

Sequence:

show sequence

GCTGGTCTGGTTTAAGGCCGTGATAGATGTCTGATTGGCGGGCTCTGTTTATTCTGTGACCAGA
TTCTTTCTAAAAGAGGGCTGGCCATACCTGCCTGAAGCCTATTGGCTGGGTATACTCAGGGCCC
TCCCTCTTCTCCCCCCCACCTCTTCCTTCACAGCACGCACAGCCACTAAGTCTGTGCGGAATCC
TAAACCAGCCCAATTTACATCCATTCATGAATGTGTGACGTCAGCAAGCTTTGAGCTCCTTTGC
GGTGGGCCAGAGGATTGTGTGGGTAGAATCCCCTCCCCCTTATTTTTCCGATTCTGCAAGGCTC
TTTAGATTAACCTTCCATCTTTTTAAAGCAAGAAAATGGAACAGCATGTGTAGGAATTCTTCAT
TGTCGTTTTGGAGTCCTCTCTTGCATCAAACCTGTGTCTCCGTAGTCCTCTGACCGTCATCTCG
GGACCTGGGTCACCCTCATGGCACAATGGCCAACCCTCAGGAGCACCTGAGCTGCTCCTCTTTG
CCACACTTGCCCTTGACTGAGAACAAAATCTCTGGTGGACGAAATGAGCTTGCGGCTATGGGGA
ACCACCCTTCCCCCAAGTTCCCTGAGGACTCGCAGGAGAGGGTGGTGGCTATACAGTCAGAGCT
GACGGAGATCACGGGCAGCCCGGTCTCCACAACAGTGCTGACCAGTGTAAGCGAAGATTCCAGG
AGCCAGTTTGAGAACAGTGTCCTTCAGCTAAGGGAACAGGACGAATCAGAGGTGACCGTATCTC
CAGGGAACAGCAACACCGTGGATGGAGAGAACACGAACGGACCTGAAGACATCAAGATCCAGTT
CAGCAGGTCAGGCAGCGGCAGCGGTGGGTTTCTCGAAGGACTCTTTGGTTGCCTCAGGCCCGTG
TGGAACATCATCGGGAAGGCGTACTCCACGGATTACAAACTGCAGCAGCAAGACACTTGGGAAG
TGCCGTTTGAGGAAATCTCAGAGCTGCAGTGGCTGGGTAGTGGAGCCCAGGGAGCCGTCTTCCT
GGGCAAATTCCGAGCAGAGGAGGTGGCCATCAAGAAGGTGAGAGAGCAGAATGAGACGGACATC
AAGCATCTGAGGAAGCTGAAGCACCCTAACATCATCGCCTTCAAGGGCGTTTGCACTCAGGCCC
CGTGCTACTGCATCATCATGGAGTACTGTGCCCACGGACAGCTGTACGAGGTCCTGAGGGCCGG
CAGGAAGATCACGCCCCGGCTGCTCGTGGACTGGTCCACGGGGATCGCCAGTGGAATGAATTAC
CTCCATCTCCATAAGATTATACATCGAGATCTCAAGTCGCCCAATGTTTTAGTGACTCACACAG
ATGCAGTGAAAATTTCAGACTTTGGCACATCTAAGGAACTCAGTGATAAAAGCACCAAGATGTC
CTTTGCTGGCACCGTTGCGTGGATGGCACCTGAGGTGATCCGGAATGAGCCTGTCTCTGAGAAG
GTTGACATATGGTCGTTTGGAGTCGTGCTTTGGGAGCTGCTGACAGGGGAGATCCCCTACAAGG
ACGTGGACTCATCAGCCATCATTTGGGGTGTTGGCAGCAATAGCTTGCACCTCCCGGTTCCTTC
CACTTGCCCAGACGGATTCAAAATCCTTATGAAACAGACGTGGCAGAGTAAGCCTCGAAACCGG
CCTTCTTTCCGGCAGACACTCATGCATCTGGACATTGCCTCTGCAGATGTGCTTGCCACCCCTC
AAGAAACGTACTTCAAGTCTCAGGCTGAATGGAGAGAAGAAGTGAAAAAACATTTCGAGAAAAT
CAAAAGTGAAGGGACCTGTATTCATCGATTAGATGAAGAACTGATTCGTCGCCGCAGGGAGGAG
CTCAGGCATGCCCTGGATATTCGAGAGCACTATGAGAGGAAGCTCGAGCGGGCTAACAATCTGT
ACATGGAGCTGAGCGCCATCATGCTGCAGCTGGAGATGCGGGAGAAGGAGCTCCTCAAGCGAGA
GCAAGCAGTGGAAAAGAAGTATCCTGGGACCTACAAGCGACACCCTGTCCGTCCAATCATCCAC
CCCAATGCCATGGAGAAGCTCATGAAAAGGAAGGTTGTGTCTCACAAGGCTGGTGTACAGACTA
AGCGGCCAGACCTGTTGCGATCCGAAGGCATCCCTAGTACAGAAGCAGTTCCCACTGCATCCCC
TCTGTCTGGAAGTCCCAAAATGTCCACCGGAAGCAGCAGGAGCCGGTACCGAAGCAAACCACGT
CACCGCCGAGGGAACAGTAGAGGCAGCCATAGTGACTTCGCAGCAATCTTGAAAACCCAGCCTG
CCCAGGAAAATTCACCCCACCCCACCTACCTACAGCACACTCAGGCTCAGTGCCCTTCTGCCTA
TCAACATAATCTTCCCCAGCAGCAAGTCCCTCCTCCCCTGCCTCAGAGCCGCCATCCCAGACTC
AATGCGCATGGGCAGGACATTGCGACCTGCGCCAATAACCTGAGGTACTTCGGCCCAGCAGCAG
CCCTGCGGAGTCCACTCAGCAACCACGCTCAAAGACAGATGCCTGGCTCTAGTCCCGACCTCAT
CTCCACAGCCATGGCAGCAGATTGCTGGAGAAATTCTGAACTTGACCAAGACCAAGTCGGACCC
TGGGGCTGTTGTCAGGCTGAACCCTATGATCCCTGTTTCCAGTGCAGGCCAGAACATTCTGGGT
CCTTAGATGTTCCCACCACTGAGCCAGTGGGGAGGAGCCCAGACCCTTCCAGTTCACCAGCACA
CAATCCTCTTTCAGGAAATGCCCAAGGCTCTGAGAGAACGGAGGCAAATGGATTCAATGGCTGT
CAGTCTGGTATTTCTCATCAATTCACACCCCCATTGCTACCTCAAAAGCCACGGCCCCTTCAGA
AGAGTGGAGATGACTCCTCAGAAGAGGAAGGAGAAGTGGACAGTGAAGTAGAATTTCCTCGACG
ACAGAGGCCTCACCGTTGCATTAGTAGTTACCAGTCGTACTCAACCTTTAGCTCCGAGAACTTC
TCTGTGTCTGATGGAGAGGAGGGTAACACTAGCGACCACTCCAACAGTCCGGATGAGTCGGCCA
ACAGACGGCAGGACCGCCTGGCAGAGACGCTGGACGACCTGCTGTCCCAGACACCAGAGGCCCC
CATCGAGATCTCCTCCCACTCGGATGGGCTGTCTGACAAGGAGTGTGCCGTACGGCGTGTGAAG
ACACAGATGTCCCTTGGCAAGCTGTGTGCTGAGGAGCGCGGCTACGAGAACCCCGTGCAGTTTG
CAGACTCGGACCGCGACTCTTCAGAGGGGGACTGCTCTGATGCCACAGTTAGGACCAGCAAGAA
CTACAGCTCTGCCACCTGGTGACCACAGCTCACTCGGCTCCAGCAATAGACCCCTCCCTCGTTC
ATCCGTCTGGGAGGCGTGGCAGGAACATGAGACTCGTCAAACCTCTGGGAAAACACCCAGAAGA
CACTGCGTCTCACGGAGCATTTCAATCAAGAATGGCAGGGATCTATTGTACTGAGTACGCCAAC
TACTGTAACATTGATATTTATTTTTGTTGGACATTTTAACACTTTGTATTGTAAAGAGTGAACT
ATATATGATACAGACACAATAATTTCTTTACAAAAAAAAAAAAAATAAGGAAATGTTGCTCCTA
AGAGCAACTTGTGGGACCAGGTGTCACTGTCACTTGAACACGGGACCGGATCCTTCATCCATGC
TTGAAAAGCTGTAAGGAAACATGTTGAACGTTGAAGACACAAGCCAAAGGGAACACAGCCACAC
TAAGTTCAGCCGGCTTGTCCGTGTGAAGGATGGAAAGACCTGGAAGTTGAGCGGTCTCACAGCA
CCAATGCCTTGGAGGGCACGTGCTTCTTCCCCTAGCAGGAAGAAGCACACAGAGCTACAGCTGC
ACATCTGGAAGCCATTTTGTTTCTTGAACGTTGAGCAGAACCTGGTAGTAAGAGCTTCATCAGC
ATCAGGTCCCACCCTTAGCACATGCTTCCCCTTCAATGCCGCCATTTTCATGCCCCTGGCCAGA
GTGGTCTTCCAGACGCAGTGCCATTTCTCCTAGGTAGCTTCCTTTCTTTCCACCTGTTAGCCAC
TTCTTTTAGGAAGGGGAAAGGGTCCTGAGGGGCACAAAGGGGTAAGATGAGAAGAGCATCTTCT
AGTGACATTAGAAAAGCAAGCCTGTAAACACCCTTCTCAAGATGGCTCTGTTCAGCTAACTAAG
CAAGACGGTGCGACCCCTCTCTGACCCAGGTCGTCTACCTCCTGGAACCACACTGATTCACACA
CGAGGTAGCTAGGATGTGTGTATCCAGTGTCCAATCCCAAACCGTCTTTGTTTTGTTCGTGATC
TCATTCTAGCTTGGAAGCTTTGGTGGCTGTCTGTCAATCACTGTAGCATAAAAGGCAAAGTTAG
CAGCCCGTAGATGACCCATCCCCATTTGTTAAATGCTATCTGTAAATTACAGTGGGTTCTGTTT
TTTTATTTTTTGTTTGTTTGTTTGGTTTTTATTATTATTATTATTCTGAATCACTACGGTTTTC
TTTAGTTGGGTTAGGAAATCGGTAGAAGGAGCAGCTGATGCTAAGCGGGAATTAGAATTACTCT
GGTTTCTCGAAAGCACACGATTCTTCCTGTGTCTAGAGTCCAGGTCTATGAATGATACCCTGCA
TGCTTTGTGGGGCTTTGGCTTGAAGCAGGAAGTGTCTCGCTGTCCCCAGAGGGCTGGGTCACAG
GTGGGCACCACCACGCGTGGGTTAAAGATGTTTCATCTAGAATTTACATACACCCACGCTGGCC
CGATTCCTGTCTCCCGTGCGGGCTTCTGCAGTGCCCTGCACTGGCTGCATTCCGATGTTGTATC
CTATAAGGATGTTAGGTATTGAGACATTCCAACCCAAATGGAAACAGTGGCCCTGCGGCGGGTG
TCACTCACTGACTGTGTCGGCCAAAAGGAAGTGCAGGAGGGGCTCGGAGCCAGTCTTATGTTAG
ATCCCTCCTTTGTTTACACTTTATGTTGAAATGTTGATTTTAAAATTTAGTCTATAATTCTTAG
CTCATGGGAAAGATGAAGGAACATGTACTTAGAAAGCAGTATTGTTTTGTTAAATTATTCCGTT
TTGTATGAACTGTAGCAGGACTACACACAAGAGCTTAAGTTATGGCATTATTATTATTGTTTTT
ATTGTATAGCGTCATGATTTTCTGTTGACCAGAAGGTGTGGCTTATGATATAGCACAATGACTG
TTCATTGCTAATCGTGAATTATTATGGACTTCTGTGGTCCTCAGTGAAGGCTGGGGATGGAGCC
GTCCTTTGGCACTGCCAGCGTTCCTCAGTGTTTTCCCTGGTCTCCTGAATACTGCAGCAATGGT
CTGAGGAGGTGTGCTCTGCCCTGACACCCAACAGGTACACTGTGATTTTTTTTTTTTTTTTTTT
GGTTCTTTTTTTCGGAGCTGGGGACCAAACCCAGGGCCTTGCGCTTCCTAGGCAAGCACTCTAC
CACTGAGCTAAACCTCCAACACCCGATTTTTTTTTTTTTACTTGATTGTAAAAGTTCCTGAATA
TGCAGATGACCAAGTAGATGACCAAGTAGTTCAAAAGCTTCAAAAGTTATAAACTTTCTAAAGT
GTCTTAGACATAAAATCATGGGACTGTAATAGGCAAAAAGAGATTGAATGGTCAGACGGCAAGA
CAAAGAGTTTCTGTGAGGACTCATGAGGGAGTTTCAAGGGCGGACAGCAAACCAAGCCATCATC
CCCTTCCTACTGAGTCCCACAGAATGGGAAGAGTGGAGAGACTAGAAGAGATGTGCACCAGCAG
GACATGCTTGACTGCCTCAGGTCCCTTGTTCCTTAGAATTAAAACGTTTCCTGTGCACACAAAG
CAGGAGCAGCTGTCTGTCCTGTGCACACCGTTAGTGACAACAGTGAGCTCTGAAGAAGCTTCTG
CTGCACCTTTCAGTGTCCTTCCAGAAAACCCACCCAGTACCTCAGCCTTCGTCAGCATTCTGCA
TTCCCACCCTGTCTGTGTATCACACCAAGGCCACCTTAACTGGAGTCACCGTGATGGGATGCCA
CAATGTGCCAGGAGTGTGGTGTTGATTCCAGCCGTTCACTGTGGCGTCGAGATGAGAGTAACAT
CCACCTTTTTTGTGGTATAATTATTGTGGTTTCAGAAAAAAAAATGATTCTAAGCAAGGTTAAA
AGGGAAGAACAGTCCCTACCCCACCCGCCTTGTAGGAGCCAGGAAACCCAGGCTGTGTTTCCTT
TAAAGCATTAGTCAGAACCTCTCTCGAGGGATCAGGAGACTTAAGAGCCAATTCTTCAGTGCTG
TTAGATGCCGCCATACCGTGGTGCTTTGAGAATCCTTGCCAGTCTGGTTTCAAGCTTCAAGATG
AATATCTGCGTTCTTTGGCCGGCTGTTTTTGACTGACTACTGAAGATGAGTTTCATTTTGTATT
GCAGTCAAGCACTGGATTTCTCTCTCTTTCTCTCCTTTTTTTTTTTTTTTTCTAGATCACATCC
CTAAGTAAAAAACCCTCTTAAAATAATAGCCTAGCACAGTAATGGAGAAGCCTGTGTGCACTTT
AAATCATACCCCACCTTCATCAAGTTCAGAGCTGGCTAAGACTGGGGTAGACTCTGCCCAGGAC
AATGAAGATGATGTTTTAAGGTGACCTGGGTGGCCTGCTTGAAAACTATTTAAAGCCTCTAGTT
GTACTAAGTAAATCCCGGAATTAAAATCGTTTTGATCAGTAA

hide sequence

RefSeq Acc Id:

XM_063270482 ⟹ XP_063126552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	92,596,436 - 92,741,717 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014000	(Get FASTA)	NCBI Sequence Viewer
	NP_001430788	(Get FASTA)	NCBI Sequence Viewer
	XP_017453465	(Get FASTA)	NCBI Sequence Viewer
	XP_063126552	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81976	(Get FASTA)	NCBI Sequence Viewer
	AAO91624	(Get FASTA)	NCBI Sequence Viewer
	EDL78039	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000038786
	ENSRNOP00000038786.6
	ENSRNOP00000071097.1

RefSeq Acc Id:

NP_001014000 ⟸ NM_001013978

- UniProtKB:

F7FMK8 (UniProtKB/TrEMBL), A6JS67 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MANPQEHLSCSSLPHLPLTENKISGGRNELAAMGNHPSPKFPEDSQERVVAIQSELTEITGSPV
STTVLTSVSEDSRSQFENSVLQLREQDESEVTVSPGNSNTVDGENTNGPEDIKIQFSRSGSGSG
GFLEGLFGCLRPVWNIIGKAYSTDYKLQQQDTWEVPFEEISELQWLGSGAQGAVFLGKFRAEEV
AIKKVREQNETDIKHLRKLKHPNIIAFKGVCTQAPCYCIIMEYCAHGQLYEVLRAGRKITPRLL
VDWSTGIASGMNYLHLHKIIHRDLKSPNVLVTHTDAVKISDFGTSKELSDKSTKMSFAGTVAWM
APEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKI
LMKQTWQSKPRNRPSFRQTLMHLDIASADVLATPQETYFKSQAEWREEVKKHFEKIKSEGTCIH
RLDEELIRRRREELRHALDIREHYERKLERANNLYMELSAIMLQLEMREKELLKREQAVEKKYP
GTYKRHPVRPIIHPNAMEKLMKRKVVSHKAGVQTKRPDLLRSEGIPSTEAVPTASPLSGSPKMS
TGSSRSRYRSKPRHRRGNSRGSHSDFAAILKTQPAQENSPHPTYLQHTQAQCPSAYQHNLPQQQ
VPPPLPQSRHPRLNAHGQDIATCANNLRYFGPAAALRSPLSNHAQRQMPGSSPDLISTAMAADC
WRNSELDQDQVGPWGCCQAEPYDPCFQCRPEHSGSLDVPTTEPVGRSPDPSSSPAHNPLSGNAQ
GSERTEANGFNGCQSGISHQFTPPLLPQKPRPLQKSGDDSSEEEGEVDSEVEFPRRQRPHRCIS
SYQSYSTFSSENFSVSDGEEGNTSDHSNSPDESANRRQDRLAETLDDLLSQTPEAPIEISSHSD
GLSDKECAVRRVKTQMSLGKLCAEERGYENPVQFADSDRDSSEGDCSDATVRTSKNYSSATW

hide sequence

RefSeq Acc Id:	XP_017453465 ⟸ XM_017597976
- Peptide Label:	isoform X1
- UniProtKB:	F7FMK8 (UniProtKB/TrEMBL), A6JS67 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANPQEHLSCSSLPHLPLTENKISGGRNELAAMGNHPSPKFPEDSQERVVAIQSELTEITGSPV STTVLTSVSEDSRSQFENSVLQLREQDESEVTVSPGNSNTVDGENTNGPEDIKIQFSRSGSGSG GFLEGLFGCLRPVWNIIGKAYSTDYKLQQQDTWEVPFEEISELQWLGSGAQGAVFLGKFRAEEV AIKKVREQNETDIKHLRKLKHPNIIAFKGVCTQAPCYCIIMEYCAHGQLYEVLRAGRKITPRLL VDWSTGIASGMNYLHLHKIIHRDLKSPNVLVTHTDAVKISDFGTSKELSDKSTKMSFAGTVAWM APEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKI LMKQTWQSKPRNRPSFRQTLMHLDIASADVLATPQETYFKSQAEWREEVKKHFEKIKSEGTCIH RLDEELIRRRREELRHALDIREHYERKLERANNLYMELSAIMLQLEMREKELLKREQAVEKKYP GTYKRHPVRPIIHPNAMEKLMKRKVVSHKAGVQTKRPDLLRSEGIPSTEAVPTASPLSGSPKMS TGSSRSRYRSKPRHRRGNSRGSHSDFAAILKTQPAQENSPHPTYLQHTQAQCPSAYQHNLPQQQ VPPPLPQSRHPRLNAHGQDIATCANNLRYFGPAAALRSPLSNHAQRQMPGSSPDLISTAMAADC WRNSELDQDQVGPWGCCQAEPYDPCFQCRPEHSGSLDVPTTEPVGRSPDPSSSPAHNPLSGNAQ GSERTEANGFNGCQSGISHQFTPPLLPQKPRPLQKSGDDSSEEEGEVDSEVEFPRRQRPHRCIS SYQSYSTFSSENFSVSDGEEGNTSDHSNSPDESANRRQDRLAETLDDLLSQTPEAPIEISSHSD GLSDKECAVRRVKTQMSLGKLCAEERGYENPVQFADSDRDSSEGDCSDATVRTSKNYSSATW hide sequence

Ensembl Acc Id:

ENSRNOP00000038786 ⟸ ENSRNOT00000035945

Ensembl Acc Id:

ENSRNOP00000072235 ⟸ ENSRNOT00000078072

Ensembl Acc Id:

ENSRNOP00000071097 ⟸ ENSRNOT00000083539

RefSeq Acc Id:	XP_063126552 ⟸ XM_063270482
- Peptide Label:	isoform X1
- UniProtKB:	A6JS67 (UniProtKB/TrEMBL), F7FMK8 (UniProtKB/TrEMBL)

Protein Domains

Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F7FMK8-F1-model_v2	AlphaFold	F7FMK8	1-958	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698266

Promoter ID:

EPDNEW_R8787

Type:

multiple initiation site

Name:

Map3k13_1

Description:

mitogen-activated protein kinase kinase kinase 13

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	82,938,346 - 82,938,406	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561227	AgrOrtholog
BioCyc Gene	G2FUF-20792	BioCyc
Ensembl Genes	ENSRNOG00000025423	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035945	ENTREZGENE
	ENSRNOT00000035945.8	UniProtKB/TrEMBL
	ENSRNOT00000083539.3	UniProtKB/TrEMBL
Gene3D-CATH	Phosphorylase Kinase, domain 1	UniProtKB/TrEMBL
	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7127060	IMAGE-MGC_LOAD
InterPro	Kinase-like_dom	UniProtKB/TrEMBL
	MAP3K12_MAP3K13	UniProtKB/TrEMBL
	MAPKKK13	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	Ser-Thr/Tyr_kinase_cat_dom	UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/TrEMBL
	Ser/Thr_Kinases-Pseudokinases	UniProtKB/TrEMBL
KEGG Report	rno:303823	UniProtKB/TrEMBL
MGC_CLONE	MGC:94134	IMAGE-MGC_LOAD
NCBI Gene	303823	ENTREZGENE
PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 13	UniProtKB/TrEMBL
	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	UniProtKB/TrEMBL
Pfam	Pkinase_Tyr	UniProtKB/TrEMBL
PhenoGen	Map3k13	PhenoGen
PIRSF	MAPKKK12_MAPKKK13	UniProtKB/TrEMBL
	MAPKKK13	UniProtKB/TrEMBL
PRINTS	TYRKINASE	UniProtKB/TrEMBL
PROSITE	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000025423	RatGTEx
SMART	S_TKc	UniProtKB/TrEMBL
Superfamily-SCOP	Kinase_like	UniProtKB/TrEMBL
UniProt	A6JS67	ENTREZGENE, UniProtKB/TrEMBL
	F7FMK8	ENTREZGENE, UniProtKB/TrEMBL
	Q66H82_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-20	Map3k13	mitogen-activated protein kinase kinase kinase 13	LOC303823	similar to mitogen-activated protein kinase kinase kinase 13; leucine zipper-bearing kinase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC303823	similar to mitogen-activated protein kinase kinase kinase 13; leucine zipper-bearing kinase			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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RGD Manual Annotations

Imported Annotations - KEGG (archival)