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Gene: Celsr1 (cadherin, EGF LAG seven-pass G-type receptor 1) Rattus norvegicus

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Symbol:

Celsr1

Name:

cadherin, EGF LAG seven-pass G-type receptor 1

RGD ID:

1560078

Description:

Predicted to enable G protein-coupled receptor activity and calcium ion binding activity. Predicted to be involved in axonogenesis; cell-cell adhesion mediated by cadherin; and establishment of planar polarity. Predicted to act upstream of or within several processes, including apical protein localization; morphogenesis of an epithelium; and motor neuron migration. Predicted to be located in membrane. Predicted to be active in adherens junction and plasma membrane. Human ortholog(s) of this gene implicated in hereditary lymphedema. Orthologous to human CELSR1 (cadherin EGF LAG seven-pass G-type receptor 1); PARTICIPATES IN Wnt signaling, the planar cell polarity pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cadherin EGF LAG seven-pass G-type receptor 1; cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila); flamingo-like protein celsr1; LOC300128

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	118,867,450 - 119,004,859 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	118,867,450 - 119,004,856 (-)	Ensembl				GRCr8
mRatBN7.2	7	116,987,616 - 117,125,035 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	116,987,605 - 117,125,164 (-)	Ensembl				mRatBN7.2
Rnor_6.0	7	126,774,010 - 126,914,085 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	126,775,516 - 126,913,585 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	126,484,850 - 126,625,684 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	123,900,366 - 124,036,122 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	113,278,640 - 113,416,057 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

bladder exstrophy-epispadias-cloacal exstrophy complex (ISO)

long QT syndrome (ISO)

Lymphatic Malformation 9 (ISO)

visceral heterotaxy (ISO)

visceral heterotaxy 5 (ISO)

Walker-Warburg syndrome (ISO)

yellow nail syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

beta-naphthoflavone (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

clobetasol (ISO)

cobalt dichloride (EXP,ISO)

cyclosporin A (ISO)

D-glucose (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dioxygen (EXP,ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fucoxanthin (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glucose (ISO)

inulin (ISO)

L-methionine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methoxychlor (EXP)

methylmercury chloride (EXP,ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-ethyl-N-nitrosourea (ISO)

N-nitrosodiethylamine (EXP)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

testosterone (EXP)

tetrachloroethene (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterior/posterior pattern specification (ISO)

apical protein localization (ISO)

axonogenesis (IBA)

biological_process (ND)

cell adhesion (IEA)

cell surface receptor signaling pathway (IEA)

cell-cell adhesion mediated by cadherin (IBA)

establishment of body hair planar orientation (ISO)

establishment of planar polarity (ISO)

establishment of planar polarity of embryonic epithelium (ISO)

G protein-coupled receptor signaling pathway (IEA)

hair follicle development (ISO)

homophilic cell-cell adhesion (IEA)

inner ear morphogenesis (ISO)

lateral sprouting involved in lung morphogenesis (ISO)

locomotory behavior (ISO)

neural tube closure (ISO)

neuron migration (IEA,ISO)

orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis (ISO)

planar dichotomous subdivision of terminal units involved in lung branching morphogenesis (ISO)

protein localization involved in establishment of planar polarity (ISO)

regulation of actin cytoskeleton organization (ISO)

Rho protein signal transduction (ISO)

signal transduction (IEA)

wound healing (ISO)

Cellular Component

adherens junction (IBA)

membrane (IEA,ISO)

plasma membrane (IBA,IEA,ISO)

Molecular Function

calcium ion binding (IEA)

G protein-coupled receptor activity (IEA)

protein binding (ISO)

transmembrane signaling receptor activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Wnt signaling, the planar cell polarity pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Planar cell polarity signaling in vertebrates.	Jones C and Chen P, Bioessays. 2007 Feb;29(2):120-32.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:10932191	PMID:12842012	PMID:15632090	PMID:15744052	PMID:15955893	PMID:16687519	PMID:17229766	PMID:18849982	PMID:19357712	PMID:20223754	PMID:20353824	PMID:20631168
PMID:20643356	PMID:20704721	PMID:32070035

Genomics

Comparative Map Data

Celsr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	118,867,450 - 119,004,859 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	118,867,450 - 119,004,856 (-)	Ensembl				GRCr8
mRatBN7.2	7	116,987,616 - 117,125,035 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	116,987,605 - 117,125,164 (-)	Ensembl				mRatBN7.2
Rnor_6.0	7	126,774,010 - 126,914,085 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	126,775,516 - 126,913,585 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	126,484,850 - 126,625,684 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	123,900,366 - 124,036,122 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	113,278,640 - 113,416,057 (-)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

CELSR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	46,361,174 - 46,537,620 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	46,360,834 - 46,537,620 (-)	Ensembl			hg38	GRCh38
GRCh37	22	46,757,071 - 46,933,517 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	45,135,395 - 45,311,731 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	22	45,077,249 - 45,253,586	NCBI
Celera	22	30,664,148 - 30,840,512 (-)	NCBI		Celera
Cytogenetic Map	22	q13.31	NCBI
HuRef	22	29,700,771 - 29,879,343 (-)	NCBI		HuRef
CHM1_1	22	46,715,504 - 46,891,675 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	46,845,906 - 47,025,248 (-)	NCBI		T2T-CHM13v2.0

Celsr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	85,782,959 - 85,918,424 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	85,783,130 - 85,918,404 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	85,898,758 - 86,034,223 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	85,898,929 - 86,034,203 (-)	Ensembl			mm10	GRCm38
GRCm38.p6 Ensembl	15	85,898,929 - 86,033,777 (-)	Ensembl			mm10	GRCm38
MGSCv37	15	85,729,188 - 85,864,207 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	85,726,695 - 85,861,543 (-)	NCBI		MGSCv36	mm8
Celera	15	88,032,450 - 88,175,947 (-)	NCBI		Celera
Cytogenetic Map	15	E2	NCBI
cM Map	15	40.42	NCBI

Celsr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	30,457,030 - 30,561,124 (-)	Ensembl
ChiLan1.0	NW_004955413	30,455,194 - 30,561,124 (-)	NCBI	ChiLan1.0	ChiLan1.0

CELSR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	56,187,757 - 56,373,480 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	58,881,830 - 59,067,171 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	22	45,427,275 - 45,604,286 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	45,428,159 - 45,604,453 (-)	Ensembl			panPan2	panpan1.1

CELSR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	19,704,104 - 19,836,886 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	19,707,804 - 19,837,481 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	19,627,660 - 19,761,740 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	20,441,895 - 20,572,829 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	20,441,951 - 20,572,830 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	20,159,738 - 20,293,475 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	20,471,194 - 20,605,951 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	20,654,864 - 20,787,972 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Celsr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	3,453,384 - 3,570,250 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936629	3,455,887 - 3,568,566 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936629	3,453,384 - 3,570,250 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC102159820
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	2,980,351 - 3,203,381 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	3,114,410 - 3,203,378 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	586,808 - 596,547 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CELSR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	28,842,332 - 29,030,672 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	28,844,644 - 29,030,216 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	96,500,977 - 96,687,142 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Celsr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	3,425,901 - 3,535,400 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624752	3,426,317 - 3,537,219 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Celsr1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	255,246,197 - 255,332,429 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Celsr1
1031 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	52
Count of miRNA genes:	48
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000036025
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	92388565	119280177	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	82111245	123048330	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	104186212	135371468	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	93302009	131686183	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	115313999	136544683	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	85043242	130043242	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	85497398	130497398	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	83626689	128626689	Rat
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	82111382	132099989	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	82111245	123048330	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	110725024	135371468	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	100548246	137014596	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	116269196	132020414	Rat
1582240	Sffal1	Serum free fatty acids level QTL 1	3.4	0.0021	blood free fatty acid amount (VT:0001553)	serum free fatty acids level (CMO:0000547)	7	118556868	125929417	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	78682549	123682549	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	71621154	119349044	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

RH131921

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	116,987,647 - 116,987,828 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	126,774,042 - 126,774,222	NCBI	Rnor6.0
Rnor_5.0	7	126,484,882 - 126,485,062	UniSTS	Rnor5.0
RGSC_v3.4	7	123,899,318 - 123,899,498	UniSTS	RGSC3.4
Celera	7	113,278,672 - 113,278,852	UniSTS
RH 3.4 Map	7	922.9	UniSTS
Cytogenetic Map	7	q34	UniSTS

RH132102

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	116,987,483 - 116,987,675 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	126,773,878 - 126,774,069	NCBI	Rnor6.0
Rnor_5.0	7	126,484,718 - 126,484,909	UniSTS	Rnor5.0
RGSC_v3.4	7	123,899,154 - 123,899,345	UniSTS	RGSC3.4
Celera	7	113,278,508 - 113,278,699	UniSTS
RH 3.4 Map	7	922.4	UniSTS
Cytogenetic Map	7	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	67	159	89	88	57	80	57	6	341	179	11	138	81	92	31	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006226188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC135400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC141997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY212290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000036025 ⟹ ENSRNOP00000029944

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	118,867,450 - 119,004,856 (-)	Ensembl
mRatBN7.2 Ensembl	7	116,987,605 - 117,125,164 (-)	Ensembl
Rnor_6.0 Ensembl	7	126,775,516 - 126,913,585 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158184 ⟹ ENSRNOP00000100482

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	118,867,450 - 119,004,856 (-)	Ensembl

RefSeq Acc Id:

NM_001427591 ⟹ NP_001414520

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	118,867,450 - 119,004,856 (-)	NCBI

RefSeq Acc Id:

XM_006242167 ⟹ XP_006242229

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	118,867,451 - 119,004,859 (-)	NCBI
mRatBN7.2	7	116,987,616 - 117,125,034 (-)	NCBI
Rnor_6.0	7	126,774,010 - 126,914,084 (-)	NCBI
Rnor_5.0	7	126,484,850 - 126,625,684 (-)	NCBI

Sequence:

show sequence

CGCCCCCCGGCCGCGCCGGGTGGATGCGGAGGTGCGCCGGGTGCATGGATTGTGCTCCGGCGCC
CGGCTCGGGCTGCGGCTCCGGGCCATGGCGCCGTCATCGCCGCGCGTGCTGTCCGCGTTGGTGT
TGCTGGCCGCCGCCGCCCTGCCAGCTCTGGGGCTGGGAGCAGCCGCCTGGGAGCTGCGGGTGCC
GGGCGGGGCCCGTGCCTTCGCCCTCGGACCGGGCTGGATCTACAGTTTGGACACCACGCGCACG
CCTCGGGAGCTGCTGGACGTGAGCCGTGAGGGGCCAGCAGCCGATCAGCTGCTTGGGCTAGGCG
CGGGGACTCGGGGTTGTGCACGGTTGGCCGGGAGGCTGCTGCCGCTGCAGGTCCGGCTGGTCGC
CCGCGGCGCCCCGACCGCCCCGAGCCTGGTACTGAGGGCACGCGCCTATGGTGCCCGCTGTGGG
GTCCGGGTGCTCAGCCGCTCGGCCCGCGGTACGGAGCTGCGCTCTCGGGCCATCCGCTCCGTGC
CTGGGCTCGGAGATGCGCTCTGTTTCCCGGCTTCTGGCGGCGGCGCAGCCTCACTGACTTCGGT
GCTTGAGGCCATCACCAACTTCCCCGCCTGCAGCTGCCCGCCGGTCGCTGGGACCCGCTGTAGG
CGCGGACCCATTTGCCTGCGGCCAGGAGGTTCAGCTGGGCTGCGCCTGGTGTGCGCCCTGGGAC
GCGCGGCAGGCGCCGTTTGGGTAGAGCTGGTAGTAGAGGCGACCTCCGGTACGCCCTCAGAGTC
GCCCTCGGTGTCGCCATCGTCGCTTAACCAGTCTCAACCTCGGGCGGGGGTGGTGCGACGATCT
AGGCGGGGCGCGGGCAGCAGCACGAGCCCGCAGTTCCCGCTGCCCAGCTACCAGGTGTCAGTGC
CTGAGAATGAGCCTGCGGGCACTGCGGTCATTGAACTGCGCGCGCACGACCCAGACGAAGGCGA
AGCAGGACGCCTTAGTTACCAGATGGAGGCGCTGTTCGATGAGCGCTCTAATGGCTACTTCCTC
ATCGATGCCACCACGGGTGCAGTGACCACAGCTCGCGCCCTGGACCGCGAGACCAAGGACACTC
ATGTACTCAAAGTTAGTGCTGTGGACCACGGCTCCCCGAGGCGCTCAGCTGCCACTTACCTCAC
CGTAACTGTCAGTGACACTAACGACCACAGTCCGGTCTTTGAGCAGTCTGAGTATCGAGAGCGA
ATTCGAGAGAACCTCGAGGTGGGCTATGAGGTTCTGACCATCCGTGCCACCGACGGGGATGCAC
CTTCCAACGCCAACATGCGCTATCGTCTGCTGGAGGGTGCAGGTGGTGTCTTTGAGATAGACGC
ACGATCGGGGGTCGTGCGCACAAGGGCTGTGGTGGACCGTGAGGAGGCGGCTGAGTACCAGCTG
CTGGTGGAGGCCAATGACCAGGGTCGCAATCCAGGCCCACTCAGTGCCTCAGCCACCGTCCACA
TAGTGGTAGAAGACGAGAATGACAACTACCCCCAGTTCAGTGAGAAGCGCTATGTGGTTCAAGT
CCCAGAAGATGTAGCTGTCAACACTCCTGTGCTTCGAGTCCAGGCCACTGACCGGGACCAGGGA
CAGAATGCAGCCATACACTACAGCATCGTCAGCGGCAACCTGAAGGGTCAGTTCTACCTGCATT
CTCTTAGTGGGAGCCTGGATGTTATCAACCCGCTGGACTTCGAGGCCATCCGGGAGTACACCCT
GCGCATCAAGGCACAGGACGGGGGGCGACCTCCTCTCATTAATTCCTCAGGGCTGGTCTCGGTG
CAGGTGTTAGACGTGAACGACAATGCACCCATCTTTGTGAGTAGTCCCTTCCAGGCTGCCGTGC
TGGAGAATGTGCCCCTCGGGCACTCAGTGCTGCACATCCAGGCAGTGGATGCGGACGCAGGGGA
GAACGCCAGGCTGCAGTATCGTCTAGTGGACACAGCCTCCACTATTTTGGGGGGCAGCAGCATC
GACTCTGAGAACCCCGTCTCTGCTCCAGACTTCCCCTTCCAGATCCACAACAGCTCCGGTTGGA
TCACTGTGTGTGCAGAGCTGGACCGAGAGTTACTAGAACACTACAGCTTTGGGGTAGAAGCAGT
GGACCACGGCTCGCCGCCCATGAGCTCCTCGGCCAGCGTGTCTATCACGGTGCTGGATGTAAAC
GACAACGACCCCGTGTTCACGCAGCCCGTGTATGAGCTGCGTCTGAACGAGGATGCGGCTGTGG
GGAGCAGCGTGCTGACCCTCAGGGCCCGAGACCGAGATGCCAACAGTGTGATCACCTACCAGCT
GACGGGCGGAAACACCCGCAACCGCTTTGCCCTCAGCAGCCAGAGCGGCGGTGGCCTCATCACC
TTGGCCCTGCCCCTGGACTACAAGCAGGAACGGCAGTATGTGCTGGCCGTGACTGCGTCCGACG
GCACCCGTTCACACACAGCGCAGGTCTTCATCAACGTCACTGATGCCAATACCCACAGGCCTGT
CTTCCAGAGCTCCCACTACACGGTCAGTGTTAGCGAAGACCGGCCCGTGGGCACCTCCATTGCC
ACCATCAGTGCCACAGATGAGGATACGGGTGAGAACGCCCGCATCACCTATGTGCTAGAGGACC
CAGTACCACAGTTCCGCATTGACCCGGACACTGGCACCATCTATACCATGACGGAACTTGACTA
TGAGGACCAGGCTGCCTACACACTGGCCATCACGGCTCAGGACAATGGCATTCCTCAGAAGTCA
GACACAACCTCTCTGGAGATCCTTATCCTCGACGCCAACGACAATGCGCCCAGGTTCCTGCGAG
ACTTCTACCAGGGTTCTGTTTTCGAGGATGCCCCCCCATCTACCAGCGTCCTCCAGGTCTCTGC
TACAGACCGGGACTCGGGCCCTAATGGCCGCCTCCTGTATACTTTTCAGGGTGGGGACGACGGA
GATGGAGATTTCTACATTGAGCCCACATCTGGTGTGATCCGTACCCAGCGCCGGCTGGACAGGG
AGAATGTGGCCGTGTATAACCTTTGGGCTCTGGCTGTAGATAGGGGCAACCCAAATCCCCTTAG
TGCGTCAGTGGAGGTTCAGGTGACTGTCTTGGACATTAACGACAACCCCCCAGTGTTCGAGAAG
GACGAGCTGGAGCTGTTTGTGGAGGAGAACAGCCCTGTGGGTTCAGTGGTGGCAAGAATAAGAG
CCAATGACCCGGATGAGGGTCCAAACGCCCAGATCATGTATCAGATTGTGGAGGGCAATGTGCC
TGAGGTCTTCCAGCTGGACCTACTGAGTGGGGACCTCCGCGCCCTGGTCGAGCTGGATTTTGAG
GTCCGGAGGGACTATATGTTGGTGGTGCAGGCCACATCCGCTCCTCTGGTAAGCCGGGCCACCG
TGCACATCCGTCTACTGGACCAGAATGACAACCCACCGGAGCTGCCCGACTTCCAGATCCTCTT
CAACAACTATGTCACCAATAAATCCAATAGCTTCCCTAGTGGTGTGATCGGCCGCATCCCAGCC
CATGACCCTGACCTATCCGACAGCCTCAATTACACCTTTCTGCAAGGCAATGAGTTGAGCCTGC
TGCTGCTGGATCCTGCCACAGGAGAGCTGCAGCTCAGTCGGGACCTGGACAACAACCGGCCACT
GGAGGCGCTTATGGAGGTGTCTGTGTCAGATGGTGTCCACAGCGTCACCGCTCTCTGCACTCTA
CGCGTGACCATCATTACAGATGACATGCTGACCAACAGTATCACAGTCCGCCTGGAGAACATGT
CGCAGGAGAGGTTCCTGTCCCCACTGCTATCCCTCTTTGTAGAAGGGGTGGCCACGGTACTGTC
CACCACCAAGGATGACATCTTCGTCTTCAACATCCAGAACGACACGGACGTCAGCTCCAACATC
CTGAACGTGACCTTCTCGGCACTGCTCCCCGGTGGCGCCCGTGGCCGGTTCTTCCCGTCCGAGG
ACCTACAGGAGCAGATCTACCTGAACCGGACACTGCTGACCACCATCTCTGCCCAACGCGTGCT
GCCCTTCGATGATAACATCTGCCTGAGGGAGCCCTGCGAGAACTACATGAAGTGCGTGTCCGTG
CTCAGGTTCGACAGTTCGGCACCCTTCATTAGTTCCACCACGGTGCTGTTCCGGCCCATCCATC
CCATCACGGGCCTGCGCTGCCGCTGCCCACCAGGCTTCACTGGAGACTACTGTGAGACTGAAAT
TGACCTTTGCTACTCCAACCCGTGTGGGGCCAATGGCCGGTGCCGGAGTCGTGAGGGTGGCTAC
ACTTGCGAGTGCTTCGAGGACTTCACAGGGGAGCATTGCCAGGTGAACGTCCGCTCAGGCCGCT
GTGCCAGCGGGGTGTGCAAAAACGGGGGCACCTGCGTGAACCTGCTCATCGGAGGCTTCCACTG
TGTGTGCCCGCCCGGCGAGTATGAGCACCCGTACTGTGAAGTGAGCACCAGGAGCTTCCCACCC
CAGTCCTTCGTTACCTTCCGGGGCCTGCGGCAGCGCTTCCATTTTACCGTCTCCCTTGCGTTTG
CCACCCAGGACAGGAACGCCCTGCTGCTGTACAACGGCCGCTTTAACGAGAAGCATGACTTCAT
CGCCCTGGAGATTGTGGAGGAGCAGCTGCAGCTCACGTTCTCGGCAGGTGAGACCACAACGACG
GTGACACCGCAGGTTCCTGGAGGTGTGAGTGACGGGCGGTGGCATTCGGTGCTGGTCCAGTACT
ACAACAAGCCCAACATTGGCCACCTGGGCCTGCCCCATGGGCCATCTGGAGAGAAGGTGGCTGT
GGTGACCGTGGATGACTGTGACGCAGCCGTGGCCGTGCACTTTGGAAGTTACGTTGGGAACTAC
AGCTGTGCTGCCCAGGGCACTCAGAGTGGCTCCAAGAAGTCACTGGATCTGACTGGTCCTCTGC
TTCTGGGTGGTGTCCCCAACCTGCCGGAAGATTTCCCCGTGCATAGCCGGCAGTTCGTGGGATG
CATGCGAAACCTGTCCATCGATGGCCGGATCGTGGATATGGCTGCGTTTATTGCCAACAATGGC
ACCAGGGCAGGCTGTGCTTCTCAGAGGAACTTCTGCGATGGGACCTTGTGCCAGAACGGGGGCA
CCTGTGTGAACAGGTGGAACACGTACTTATGTGAGTGCCCCCTCCGCTTCGGTGGAAAGAACTG
TGAACAAGCTATGCCACACCCGCAGCGCTTCACTGGTGAGAGCATCGTGTCATGGAGTGACCTC
GACATCACCATCTCTGTGCCTTGGTACCTGGGGCTCATGTTCCGGACGCGGAAGGAGGATGGTG
TGCTGATGGAAGCCACAGCTGGCACATCTTCCAAGCTCCATCTCCAGATTCTCAACAGCTACAT
CCGATTCGAGGTCTCCCACGGCCCCTCTGACGTGGCATCCATGCAGCTGTCCAAGACCCGTGTG
ACTGATGGGGGATGGCATCACCTGCTCATAGAGCTGAGGAGTGCCAAGGAGGGCAAGGACATCA
AATACCTGGCAATCATGACCTTGGACTATGGGATGGACCAGAGCACAGTGCAGATTGGGAACCA
GCTTCCTGGGTTGAAGATGCGGACTATTGTCATCGGAGGTGTGTCTGAGGACAAGGTGTCTGTC
CGCCATGGTTTCCGAGGTTGTATGCAGGGCGTGAGGGTGGGAGAGACGTCCACCAACATTGCCA
CCCTGAACATGAATGACGCCCTCAAGGTCAGAGTGAAGGACGGCTGTGACGTGGAGGACCCATG
TGCCTCAAGCCCCTGCCCTCCGCATAGCCACTGCCGTGACACATGGGACAGCTACTCCTGCATC
TGTGACAGAGGGTACTTTGGAAAAAAGTGTGTGGACGCATGTCTCCTGAACCCCTGCAAGCATG
TGGCAGCCTGTGTGCGCTCCCCTAACACCCCTCGAGGCTACTCCTGCGAGTGTGGGCCCGGCCA
CTATGGACAGTATTGTGAGAACAAAGTTGACCTTCCTTGCCCCAAAGGCTGGTGGGGGAACCCG
GTATGTGGCCCCTGTCACTGTGCTGTCAGTCAAGGCTTTGATCCGGACTGCAACAAGACCAATG
GCCAATGCCAGTGCAAGGAGAATTACTACAAGCCCCCAGCCCAGGATGCTTGCCTTCCCTGTGA
CTGTTTCCCCCACGGCTCCCACAGCCGTGCCTGTGACATGGACACTGGGCAGTGTGCCTGCAAG
CCTGGTGTCATCGGCCGTCAGTGCAACCGCTGCGATAATCCTTTTGCTGAGGTCACCTCACTTG
GCTGTGAAGTGATCTACAATGGGTGTCCCAGAGCATTTGAGGCTGGCATCTGGTGGCCACAGAC
GAAATTTGGGCAGCCAGCAGCAGTGCCATGCCCCAAAGGATCAGTGGGTAACGCAGTTCGTCAC
TGCAGCGGGGAGAAGGGCTGGCTTCCCCCAGAGCTCTTCAACTGCACCTCGGGCTTCTTTGTGG
ATCTCAAGGCCATGAATGAGAAGCTGAGCCGCAACGAGACAAGGATGGATGGAAACAGGTCCCT
GCGGCTTGCAAAGGCACTGAGGAATGCCACACAGAGGAACAGCACGCTCTTTGGCAATGACGTG
CGCACAGCCTACCAACTGTTGGCCCGCATCTTGCAGCATGAGAGCCAGCAGCAGGGCTTTGACT
TGGCAGCCACTCGTGAGGCTAATTTCCACGAGGATGTCGTCCACACGGGCAGCTCCCTCCTGGC
CCCAGACACAGAGGCAGCCTGGGAACAGATCCAGCGAAGCGAGGCTGGAGCTGCCCAGCTGCTG
AGGCATTTTGAGGCGTACTTCAGCAACGTGGCACGGAATGTGAAAAGGACCTACCTGAGGCCCT
TCATCATCGTCACCGACAACATGATTCTTGCAGTTGACATCTTCGACAAGCTTAACTTCACCGG
TGCCCAGGTGCCAAGGTTCCAGGACGTTCAGGAAGAGTTCCCAAGGGAGTTGGAGTCCTCCGTG
TCCTTCCCAGCTGACACTTTCAAGCCACCAGAGAAAAAAGAAGGCCCCATGGTGAGGCTGACCA
ACCGGAGGACTGCCCCCCTCACAGCACAACCAGAGCCCAGGACCGAGAGGGAAACTTCATTCAG
CAGACAGAGGAGACACCCCGATGAGCCCGGCCAGTTTGCTGTTGCTCTGGTTGTCATTTACCGG
ACCCTGGGTCAGCTGCTGCCTGAACACTATGACCCCGACCACCGCAGCCTCCGATTGCCTAACC
GGCCTGTCATCAACACCCCGGTGGTGAATGCTATGGTCTACAGTGAGGGGACCCCATTCCCCAG
CTCTCTGCAGAGGCCTGTCCTGGTGGAGTTCTCTCTGTTGGAGACTGAGGAACGAAGCAAGCCT
GTCTGTGTATTCTGGAACCACTCCCTCGACATCGGTGGGACTGGAGGATGGTCAGCCAAGGGCT
GTGAACTACTGTCGAGGAACCGGACCCACGTCACATGTCAGTGTAGCCATTCAGCCAGCTGTGC
GGTACTCATGGACATTTCCAGACGTGAGCATGGGGAGGTTCTGCCTCTGAAGATCATCACGTAT
GCCGCCCTGTCCTTGTCCCTGGTGGCCCTCCTGGTGTCCTTCGTCCTGCTCTCCCTCGTCCGGA
CACTGCGCTCCAACCTGCACAGCATCCACAAGAACCTCATTGCGGCTCTATTCTTCTCCCAGCT
CGTCTTCCTGGTTGGGATCAACCAGACTGAGAACCCGTTTCTCTGCACAGTGGTCGCCATCCTC
CTGCACTATGTCTCCATGGGCACCTTCGCCTGGACCCTGGTGGAGAACTTGCATGTCTATCGTA
TGCTGACCGAAGTGCGCAACATCGACACGGGGCCCATGCGGTTCTACCATGTGGTGGGCTGGGG
CATCCCCGCCATTGTCACAGGACTGGCTGTTGGCTTGGACCCTCAGGGCTATGGAAACCCTGAC
TTCTGCTGGCTGTCCCTTCAGGATACCCTAATCTGGAGCTTTGCTGGACCTGTCGGAACAGTTG
TAATTATCAACACGGTCATCTTTGTCCTGTCTGCAAAGGTTTCCTGCCAAAGAAAGCACCATTA
TTATGAAAGAAAGGGGGTTGTCTCCATGCTGAGGACTGCCTTCCTCCTGCTGCTGCTTGTCACC
GCCACCTGGCTGCTGGGACTACTGGCAGTAAACAGTGACACTCTGATCTTTCACTACCTCTTTG
CGGCCTTCAGCTGCTTGCAGGGCATCTTTGTCCTCCTGTTCCACTGTGTGACCCACAGAGAGGT
GAGGAAGCATCTGAGGGCAGTGCTGGCCGGGAAGAAGCTGCACCTGGATGACTCAGCTACCACA
AGAGCCACTCTGCTAACGCGCTCCCTCAACTGCAACAACACCTACAGCGAAGGACCAGACATGC
TCCGCACCGGCCTGGGCGAGTCCACGGCCTCTCTGGACAGCACCACCAGGGATGAAGGGGTCCA
GAAACTCAGTGTGTCCTCTGGACCAGCACGTGGTAACCATGGAGAACCAGATTCGTCCTTCATC
CCTAGGAACTCCAAGAAAGCTCATGGCCCTGACTCTGACTCCGATAGTGAGCTGTCCCTGGATG
AGCACAGTAGTTCCTACGCTTCTTCACACACGTCAGACAGTGAGGATGATGGAGGAGAAGCTGA
AGACAAGTGGAATCCAGCCGGTGGCCCTGCCCACAGCACCCCAAAAGCAGATGCTCTAGCCAAC
CATGTCCCAGCTGGCTGGCCCGAGGAGAGTCTGGCTGGGAGTGACAGTGAGGAGTTGGACACAG
AGCCCCACCTGAAGGTGGAGACCAAGGTCAGCGTGGAGTTACACCGGCAGGCGCAGGGCAATCA
CTATGGCGACCGGGCCTCTGACCTGGAAAGTGGGGTCCTGGCCAAGCCAGTGGCCGTGCTTAGC
AGCCAGCCCCAGGAGCAGCGGAAAGGCATCCTGAAAAACAAAGTCACCTACCCACCACCATTAC
CAGAGCAGCCACTGAAGTGCCGGCTGCGAGAGAAGCTGGCTGACTGTGAGCAGAGCCCCACGTC
CTCCCGCACATCCTCCCTTGGCTCTGGTGATGGTGTTCATGCCACCGACTGTGTCATTACCATC
AAGACTCCGAGGAGGGAGCCAGGCCGTGAGCATCTCAACGGTGTGGCCATGAATGTATGCACAG
GGAGTGCCCAGGCTGATGGATCTGACTCAGAGAAACCACACGGCACAGTCAACCTCACAGACTG
CCAGTCAAGCCCTCAGGCCTTGAAGCCTGGGACTGCTGCCTATGGGGCAAGCAACCCCCTCGCA
TGAGGGCTCCTGCAATAGCAGCTGGCTCTACACAGACCGTCCAGACGGGAAGCCCTCGGCCCTC
GTAGGAGCTCGGGGCCCAGACTGCGACAAAGTGCCAAAGCCACGGGTACGTCTCTTGAGAAAGA
TGTGGACTTCATTCAGGCTGGCACAGCTACGTCCTTAGACTGAAGACAGAATCCAAACCATGCT
GTATAAGAAACCCTACACTGCAGCCATTGAGCCTGAGCCGGACTTGGTGAATCTCACTATACCA
GGCCCCTTGACTTGCCACGGTTCAGAGGGGACACACATCAAGGCCCAGCTGTCCCCAGAGGCCT
CTCCTTGCAGTGCAAGCCCATAGTCACCAGCCTAGCATTGCCTCTGCAAAGGCACCCTGTGTCT
TAAATAATGTAAATACATATAGATCTTTCCCTGGACTTGGGAAGATGGGAATCTGTGTATATTT
TACACTGTTCTGACTTTGCAGACACTGGAGAACCATGAAATGGCTTCTCAGTATATTGCCCAAG
GAAGCTTGCACACTTGTACTTGAATCTGGAGTGAGTCAACACAGCTGGTCCCAGGGCCCAGGTG
GGGAGGCTGTGACGTTGACATAGCATGTGCAGCTGCTTCCCACCAGGGAGTATGCGTGTTCCAC
TGGCCTTTGGAGCACACAGCACATGTGCTGTGTGTGCTCAGCTCCACGGATCCAGGACAGGGCT
GGCCTGTGAGGAGTGGGCACCATAGCAGATGTGAAATCCTGACTACTCTGCCACCCCTGCCCCT
TGTGCCCGATCCACTCCTGATACCGTGAGGCTGCTCGGGAGCCCTTCCCAGTCAGCCCAGTGTG
CAGACTGTCACTGCTCCTGTTCCCATAGGCTCTCAGAGTGCTCATGTTCCTGATCCCAGGGGAG
CCCTGAGGTCTAACAGGTTGTCACGTTCCTTCCTTCCAACGTTCTACCTTTTCAGACTTCAGGG
CTCTCTAGGCAGGCAGGGGGCTCCACCCCCAAAATCACTTTGCTTCAAATGGCCAATTGTGCAA
AGAAAGCCAGAGTGCCCGTTTTCAATGGTTACCAAATTCTTCTTGGAATCTCACACCAAGGACT
GCTGTGACCAGCCCACTGTGAGCCATGGTGCAGCCAAGCCCAAGGGAGCCTGGAGTTACTCAGT
CGTTTACTTCCCCGTGGATTGCTGTTTGAATCAGGTGCCCAAGTACATGAGGTGTACAGCCGCT
CTGGATCAGAACCTAAGCTGTGTTCTCCTGAGTGCACGGGACTGCTAATGACTGACTGGTGAGA
GGAAAGCCTACATGACATGGTCTGAGGTCACTCACCCCAGGTAGCCTGCAGATGGCAAGGACAC
AAAGACTGGTCTAGCACAGGGGAGCTTCAGTCTCCAGGAGGCGGAGCACTCTGATCACTCACAA
TTCTGCAACCCACGCCACCTCAGAAGGTGAAGTTTTTAATTTGATCACAACTGTTTGATCAACT
GTTTTTATGGCCTAAGACTTTATAGAGTCAACACTGGAGACTTTAACAGGTGTATTTATTACTG
GTCAGCACTGGATGACAACACAGGTGAGGTGCGTCTATAATAAATTAAGAGTTTTGGATTTGT

hide sequence

RefSeq Acc Id:

XM_039080317 ⟹ XP_038936245

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	118,867,451 - 119,004,859 (-)	NCBI
mRatBN7.2	7	116,987,616 - 117,125,035 (-)	NCBI

RefSeq Acc Id:

XM_063263331 ⟹ XP_063119401

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	118,867,451 - 119,004,859 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414520	(Get FASTA)	NCBI Sequence Viewer
	XP_006242229	(Get FASTA)	NCBI Sequence Viewer
	XP_038936245	(Get FASTA)	NCBI Sequence Viewer
	XP_063119401	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAO72333	(Get FASTA)	NCBI Sequence Viewer
	EDM15563	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000029944
	ENSRNOP00000029944.6
	ENSRNOP00000100482.1

RefSeq Acc Id:	XP_006242229 ⟸ XM_006242167
- Peptide Label:	isoform X1
- UniProtKB:	A6HTF9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPSSPRVLSALVLLAAAALPALGLGAAAWELRVPGGARAFALGPGWIYSLDTTRTPRELLDVS REGPAADQLLGLGAGTRGCARLAGRLLPLQVRLVARGAPTAPSLVLRARAYGARCGVRVLSRSA RGTELRSRAIRSVPGLGDALCFPASGGGAASLTSVLEAITNFPACSCPPVAGTRCRRGPICLRP GGSAGLRLVCALGRAAGAVWVELVVEATSGTPSESPSVSPSSLNQSQPRAGVVRRSRRGAGSST SPQFPLPSYQVSVPENEPAGTAVIELRAHDPDEGEAGRLSYQMEALFDERSNGYFLIDATTGAV TTARALDRETKDTHVLKVSAVDHGSPRRSAATYLTVTVSDTNDHSPVFEQSEYRERIRENLEVG YEVLTIRATDGDAPSNANMRYRLLEGAGGVFEIDARSGVVRTRAVVDREEAAEYQLLVEANDQG RNPGPLSASATVHIVVEDENDNYPQFSEKRYVVQVPEDVAVNTPVLRVQATDRDQGQNAAIHYS IVSGNLKGQFYLHSLSGSLDVINPLDFEAIREYTLRIKAQDGGRPPLINSSGLVSVQVLDVNDN APIFVSSPFQAAVLENVPLGHSVLHIQAVDADAGENARLQYRLVDTASTILGGSSIDSENPVSA PDFPFQIHNSSGWITVCAELDRELLEHYSFGVEAVDHGSPPMSSSASVSITVLDVNDNDPVFTQ PVYELRLNEDAAVGSSVLTLRARDRDANSVITYQLTGGNTRNRFALSSQSGGGLITLALPLDYK QERQYVLAVTASDGTRSHTAQVFINVTDANTHRPVFQSSHYTVSVSEDRPVGTSIATISATDED TGENARITYVLEDPVPQFRIDPDTGTIYTMTELDYEDQAAYTLAITAQDNGIPQKSDTTSLEIL ILDANDNAPRFLRDFYQGSVFEDAPPSTSVLQVSATDRDSGPNGRLLYTFQGGDDGDGDFYIEP TSGVIRTQRRLDRENVAVYNLWALAVDRGNPNPLSASVEVQVTVLDINDNPPVFEKDELELFVE ENSPVGSVVARIRANDPDEGPNAQIMYQIVEGNVPEVFQLDLLSGDLRALVELDFEVRRDYMLV VQATSAPLVSRATVHIRLLDQNDNPPELPDFQILFNNYVTNKSNSFPSGVIGRIPAHDPDLSDS LNYTFLQGNELSLLLLDPATGELQLSRDLDNNRPLEALMEVSVSDGVHSVTALCTLRVTIITDD MLTNSITVRLENMSQERFLSPLLSLFVEGVATVLSTTKDDIFVFNIQNDTDVSSNILNVTFSAL LPGGARGRFFPSEDLQEQIYLNRTLLTTISAQRVLPFDDNICLREPCENYMKCVSVLRFDSSAP FISSTTVLFRPIHPITGLRCRCPPGFTGDYCETEIDLCYSNPCGANGRCRSREGGYTCECFEDF TGEHCQVNVRSGRCASGVCKNGGTCVNLLIGGFHCVCPPGEYEHPYCEVSTRSFPPQSFVTFRG LRQRFHFTVSLAFATQDRNALLLYNGRFNEKHDFIALEIVEEQLQLTFSAGETTTTVTPQVPGG VSDGRWHSVLVQYYNKPNIGHLGLPHGPSGEKVAVVTVDDCDAAVAVHFGSYVGNYSCAAQGTQ SGSKKSLDLTGPLLLGGVPNLPEDFPVHSRQFVGCMRNLSIDGRIVDMAAFIANNGTRAGCASQ RNFCDGTLCQNGGTCVNRWNTYLCECPLRFGGKNCEQAMPHPQRFTGESIVSWSDLDITISVPW YLGLMFRTRKEDGVLMEATAGTSSKLHLQILNSYIRFEVSHGPSDVASMQLSKTRVTDGGWHHL LIELRSAKEGKDIKYLAIMTLDYGMDQSTVQIGNQLPGLKMRTIVIGGVSEDKVSVRHGFRGCM QGVRVGETSTNIATLNMNDALKVRVKDGCDVEDPCASSPCPPHSHCRDTWDSYSCICDRGYFGK KCVDACLLNPCKHVAACVRSPNTPRGYSCECGPGHYGQYCENKVDLPCPKGWWGNPVCGPCHCA VSQGFDPDCNKTNGQCQCKENYYKPPAQDACLPCDCFPHGSHSRACDMDTGQCACKPGVIGRQC NRCDNPFAEVTSLGCEVIYNGCPRAFEAGIWWPQTKFGQPAAVPCPKGSVGNAVRHCSGEKGWL PPELFNCTSGFFVDLKAMNEKLSRNETRMDGNRSLRLAKALRNATQRNSTLFGNDVRTAYQLLA RILQHESQQQGFDLAATREANFHEDVVHTGSSLLAPDTEAAWEQIQRSEAGAAQLLRHFEAYFS NVARNVKRTYLRPFIIVTDNMILAVDIFDKLNFTGAQVPRFQDVQEEFPRELESSVSFPADTFK PPEKKEGPMVRLTNRRTAPLTAQPEPRTERETSFSRQRRHPDEPGQFAVALVVIYRTLGQLLPE HYDPDHRSLRLPNRPVINTPVVNAMVYSEGTPFPSSLQRPVLVEFSLLETEERSKPVCVFWNHS LDIGGTGGWSAKGCELLSRNRTHVTCQCSHSASCAVLMDISRREHGEVLPLKIITYAALSLSLV ALLVSFVLLSLVRTLRSNLHSIHKNLIAALFFSQLVFLVGINQTENPFLCTVVAILLHYVSMGT FAWTLVENLHVYRMLTEVRNIDTGPMRFYHVVGWGIPAIVTGLAVGLDPQGYGNPDFCWLSLQD TLIWSFAGPVGTVVIINTVIFVLSAKVSCQRKHHYYERKGVVSMLRTAFLLLLLVTATWLLGLL AVNSDTLIFHYLFAAFSCLQGIFVLLFHCVTHREVRKHLRAVLAGKKLHLDDSATTRATLLTRS LNCNNTYSEGPDMLRTGLGESTASLDSTTRDEGVQKLSVSSGPARGNHGEPDSSFIPRNSKKAH GPDSDSDSELSLDEHSSSYASSHTSDSEDDGGEAEDKWNPAGGPAHSTPKADALANHVPAGWPE ESLAGSDSEELDTEPHLKVETKVSVELHRQAQGNHYGDRASDLESGVLAKPVAVLSSQPQEQRK GILKNKVTYPPPLPEQPLKCRLREKLADCEQSPTSSRTSSLGSGDGVHATDCVITIKTPRREPG REHLNGVAMNVCTGSAQADGSDSEKPHGTVNLTDCQSSPQALKPGTAAYGASNPLA hide sequence

Ensembl Acc Id:

ENSRNOP00000029944 ⟸ ENSRNOT00000036025

RefSeq Acc Id:	XP_038936245 ⟸ XM_039080317
- Peptide Label:	isoform X2
- UniProtKB:	A6HTF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414520 ⟸ NM_001427591
- UniProtKB:	F1MAS4 (UniProtKB/TrEMBL), A6HTF9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119401 ⟸ XM_063263331
- Peptide Label:	isoform X3
- UniProtKB:	A6HTF9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000100482 ⟸ ENSRNOT00000158184

Protein Domains

Cadherin EGF-like G-protein coupled receptors family 2 profile GAIN-B Laminin EGF-like Laminin G

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560078	AgrOrtholog
BioCyc Gene	G2FUF-32521	BioCyc
Ensembl Genes	ENSRNOG00000021285	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000036025	ENTREZGENE
	ENSRNOT00000036025.7	UniProtKB/TrEMBL
	ENSRNOT00000158184.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.200	UniProtKB/TrEMBL
	2.60.220.50	UniProtKB/TrEMBL
	4.10.1240.10	UniProtKB/TrEMBL
	Cadherins	UniProtKB/TrEMBL
	Laminin	UniProtKB/TrEMBL
	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
	Tie2 ligand-binding domain superfamily	UniProtKB/TrEMBL
InterPro	Cadherin	UniProtKB/TrEMBL
	Cadherin-like	UniProtKB/TrEMBL
	Cadherin_CELSR1-3_9th	UniProtKB/TrEMBL
	Cadherin_CS	UniProtKB/TrEMBL
	ConA-like_subgrp	UniProtKB/TrEMBL
	EG-like_dom	UniProtKB/TrEMBL
	EGF-like_Ca-bd_dom	UniProtKB/TrEMBL
	EGF-type_Asp/Asn_hydroxyl_site	UniProtKB/TrEMBL
	GAIN_B	UniProtKB/TrEMBL
	GAIN_dom_N	UniProtKB/TrEMBL
	GAIN_dom_sf	UniProtKB/TrEMBL
	GPCR_2-like	UniProtKB/TrEMBL
	GPCR_2_extracell_dom_sf	UniProtKB/TrEMBL
	GPCR_2_extracellular_dom	UniProtKB/TrEMBL
	GPCR_2_secretin-like	UniProtKB/TrEMBL
	GPS	UniProtKB/TrEMBL
	Growth_fac_rcpt_N_dom	UniProtKB/TrEMBL
	Laminin_EGF	UniProtKB/TrEMBL
	Laminin_G	UniProtKB/TrEMBL
NCBI Gene	300128	ENTREZGENE
PANTHER	CADHERIN EGF LAG SEVEN-PASS G-TYPE RECEPTOR 1	UniProtKB/TrEMBL
	FAT ATYPICAL CADHERIN-RELATED	UniProtKB/TrEMBL
Pfam	7tm_2	UniProtKB/TrEMBL
	Cadherin	UniProtKB/TrEMBL
	Cadherin_CELSR2_9th	UniProtKB/TrEMBL
	EGF	UniProtKB/TrEMBL
	GAIN	UniProtKB/TrEMBL
	GPS	UniProtKB/TrEMBL
	HRM	UniProtKB/TrEMBL
	Laminin_EGF	UniProtKB/TrEMBL
	Laminin_G_2	UniProtKB/TrEMBL
PhenoGen	Celsr1	PhenoGen
PRINTS	CADHERIN	UniProtKB/TrEMBL
	GPCRSECRETIN	UniProtKB/TrEMBL
PROSITE	ASX_HYDROXYL	UniProtKB/TrEMBL
	CADHERIN_1	UniProtKB/TrEMBL
	CADHERIN_2	UniProtKB/TrEMBL
	EGF_1	UniProtKB/TrEMBL
	EGF_2	UniProtKB/TrEMBL
	EGF_3	UniProtKB/TrEMBL
	EGF_LAM_1	UniProtKB/TrEMBL
	EGF_LAM_2	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F2_3	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F2_4	UniProtKB/TrEMBL
	GPS	UniProtKB/TrEMBL
	LAM_G_DOMAIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000021285	RatGTEx
SMART	EGF	UniProtKB/TrEMBL
	EGF_CA	UniProtKB/TrEMBL
	EGF_Lam	UniProtKB/TrEMBL
	GPS	UniProtKB/TrEMBL
	HormR	UniProtKB/TrEMBL
	LamG	UniProtKB/TrEMBL
	SM00112	UniProtKB/TrEMBL
Superfamily-SCOP	Cadherin	UniProtKB/TrEMBL
	ConA_like_lec_gl	UniProtKB/TrEMBL
	EGF/Laminin	UniProtKB/TrEMBL
	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
	SSF57184	UniProtKB/TrEMBL
UniProt	A0ABK0LG69_RAT	UniProtKB/TrEMBL
	A6HTF9	ENTREZGENE, UniProtKB/TrEMBL
	F1MAS4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-02-27	Celsr1	cadherin, EGF LAG seven-pass G-type receptor 1	Celsr1	cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-25	Celsr1	cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)	Celsr1	cadherin EGF LAG seven-pass G-type receptor 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Celsr1	cadherin EGF LAG seven-pass G-type receptor 1	LOC300128	flamingo-like protein celsr1	Symbol and Name updated	1299863	APPROVED
2006-02-09	LOC300128	flamingo-like protein celsr1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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