CELSR1 (cadherin EGF LAG seven-pass G-type receptor 1) - Rat Genome Database

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Gene: CELSR1 (cadherin EGF LAG seven-pass G-type receptor 1) Pan paniscus
Analyze
Symbol: CELSR1
Name: cadherin EGF LAG seven-pass G-type receptor 1
RGD ID: 11940008
Description: ENCODES a protein that exhibits calcium ion binding (inferred); G protein-coupled receptor activity (inferred); INVOLVED IN anterior/posterior pattern specification (ortholog); apical protein localization (ortholog); establishment of body hair planar orientation (ortholog); PARTICIPATES IN Wnt signaling, the planar cell polarity pathway; ASSOCIATED WITH hereditary lymphedema (ortholog); intellectual disability (ortholog); long QT syndrome (ortholog); FOUND IN cytoplasm (inferred); membrane (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22356,187,757 - 56,373,480 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12258,881,830 - 59,067,171 (-)NCBINHGRI_mPanPan1
PanPan1.12245,427,275 - 45,604,286 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2245,428,159 - 45,604,453 (-)Ensemblpanpan1.1panPan2


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CELSR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22356,187,757 - 56,373,480 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12258,881,830 - 59,067,171 (-)NCBINHGRI_mPanPan1
PanPan1.12245,427,275 - 45,604,286 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2245,428,159 - 45,604,453 (-)Ensemblpanpan1.1panPan2
CELSR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382246,361,174 - 46,537,620 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2246,360,834 - 46,537,620 (-)EnsemblGRCh38hg38GRCh38
GRCh372246,757,071 - 46,933,517 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362245,135,395 - 45,311,731 (-)NCBINCBI36Build 36hg18NCBI36
Build 342245,077,249 - 45,253,586NCBI
Celera2230,664,148 - 30,840,512 (-)NCBICelera
Cytogenetic Map22q13.31NCBI
HuRef2229,700,771 - 29,879,343 (-)NCBIHuRef
CHM1_12246,715,504 - 46,891,675 (-)NCBICHM1_1
T2T-CHM13v2.02246,845,906 - 47,025,248 (-)NCBIT2T-CHM13v2.0
Celsr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391585,782,959 - 85,918,424 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1585,783,130 - 85,918,404 (-)EnsemblGRCm39 Ensembl
GRCm381585,898,758 - 86,034,223 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1585,898,929 - 86,034,203 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1585,898,929 - 86,033,777 (-)EnsemblGRCm38mm10GRCm38
MGSCv371585,729,188 - 85,864,207 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361585,726,695 - 85,861,543 (-)NCBIMGSCv36mm8
Celera1588,032,450 - 88,175,947 (-)NCBICelera
Cytogenetic Map15E2NCBI
cM Map1540.42NCBI
Celsr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87118,867,450 - 119,004,859 (-)NCBIGRCr8
mRatBN7.27116,987,616 - 117,125,035 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,987,605 - 117,125,164 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07126,774,010 - 126,914,085 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,775,516 - 126,913,585 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07126,484,850 - 126,625,684 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47123,900,366 - 124,036,122 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7113,278,640 - 113,416,057 (-)NCBICelera
Cytogenetic Map7q34NCBI
Celsr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541330,457,030 - 30,561,124 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541330,455,194 - 30,561,124 (-)NCBIChiLan1.0ChiLan1.0
CELSR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11019,704,104 - 19,836,886 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1019,707,804 - 19,837,481 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1019,627,660 - 19,761,740 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01020,441,895 - 20,572,829 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1020,441,951 - 20,572,830 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11020,159,738 - 20,293,475 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01020,471,194 - 20,605,951 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01020,654,864 - 20,787,972 (+)NCBIUU_Cfam_GSD_1.0
Celsr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049453,453,384 - 3,570,250 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366293,455,887 - 3,568,566 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366293,453,384 - 3,570,250 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC102159820
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl52,980,351 - 3,203,381 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.153,114,410 - 3,203,378 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25586,808 - 596,547 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CELSR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11928,842,332 - 29,030,672 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1928,844,644 - 29,030,216 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604596,500,977 - 96,687,142 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Celsr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247523,425,901 - 3,535,400 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247523,426,317 - 3,537,219 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000052215   ⟹   ENSPPAP00000029366
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2245,428,159 - 45,604,453 (-)Ensembl
RefSeq Acc Id: XM_034951716   ⟹   XP_034807607
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22356,187,757 - 56,373,480 (-)NCBI
NHGRI_mPanPan12258,881,830 - 59,067,171 (-)NCBI
RefSeq Acc Id: XM_034951717   ⟹   XP_034807608
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22356,187,757 - 56,373,480 (-)NCBI
NHGRI_mPanPan12258,881,830 - 59,067,171 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034807607 (Get FASTA)   NCBI Sequence Viewer  
  XP_034807608 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029366.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000029366   ⟸   ENSPPAT00000052215
RefSeq Acc Id: XP_034807608   ⟸   XM_034951717
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034807607   ⟸   XM_034951716
- Peptide Label: isoform X1
Protein Domains
Cadherin   EGF-like   G-protein coupled receptors family 2 profile   Laminin EGF-like   Laminin G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037677 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052215.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.610 UniProtKB/TrEMBL
  2.60.120.200 UniProtKB/TrEMBL
  2.60.220.50 UniProtKB/TrEMBL
  4.10.1240.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
  Tie2 ligand-binding domain superfamily UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  GAIN_dom_N UniProtKB/TrEMBL
  GAIN_dom_sf UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
  GPCR_2_extracell_dom_sf UniProtKB/TrEMBL
  GPCR_2_extracellular_dom UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_G UniProtKB/TrEMBL
NCBI Gene CELSR1 ENTREZGENE
PANTHER CADHERIN EGF LAG SEVEN-PASS G-TYPE RECEPTOR 1 UniProtKB/TrEMBL
  FAT ATYPICAL CADHERIN-RELATED UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/TrEMBL
  Cadherin UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  GAIN UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  HRM UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  Laminin_G_2 UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
  GPCRSECRETIN UniProtKB/TrEMBL
PROSITE ASX_HYDROXYL UniProtKB/TrEMBL
  CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_3 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  LAM_G_DOMAIN UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  HormR UniProtKB/TrEMBL
  LamG UniProtKB/TrEMBL
  SM00112 UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49313 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A2R9BS05_PANPA UniProtKB/TrEMBL