Mkrn2 (makorin, ring finger protein, 2) - Rat Genome Database

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Pathways
Gene: Mkrn2 (makorin, ring finger protein, 2) Rattus norvegicus
Analyze
Symbol: Mkrn2
Name: makorin, ring finger protein, 2
RGD ID: 1310618
Description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including negative regulation of inflammatory response to antigenic stimulus; negative regulation of non-canonical NF-kappaB signal transduction; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Orthologous to human MKRN2 (makorin ring finger protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: E3 ubiquitin-protein ligase makorin-2; LOC297525; MGC95133; probable E3 ubiquitin-protein ligase makorin-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84150,334,164 - 150,352,271 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4150,334,142 - 150,352,263 (+)EnsemblGRCr8
mRatBN7.24148,661,529 - 148,679,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4148,661,553 - 148,679,642 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4154,885,604 - 154,904,019 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04150,668,687 - 150,687,102 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04149,292,510 - 149,310,925 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04147,514,041 - 147,532,086 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4147,514,120 - 147,532,084 (+)Ensemblrn6Rnor6.0
Rnor_5.04210,801,433 - 210,819,194 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44151,734,327 - 151,752,629 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4137,552,122 - 137,570,545 (+)NCBICelera
RGSC_v3.14151,979,167 - 151,997,468 (+)NCBI
Cytogenetic Map4q42NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11597136   PMID:12477932   PMID:22681889  


Genomics

Comparative Map Data
Mkrn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84150,334,164 - 150,352,271 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4150,334,142 - 150,352,263 (+)EnsemblGRCr8
mRatBN7.24148,661,529 - 148,679,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4148,661,553 - 148,679,642 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4154,885,604 - 154,904,019 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04150,668,687 - 150,687,102 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04149,292,510 - 149,310,925 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04147,514,041 - 147,532,086 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4147,514,120 - 147,532,084 (+)Ensemblrn6Rnor6.0
Rnor_5.04210,801,433 - 210,819,194 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44151,734,327 - 151,752,629 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4137,552,122 - 137,570,545 (+)NCBICelera
RGSC_v3.14151,979,167 - 151,997,468 (+)NCBI
Cytogenetic Map4q42NCBI
MKRN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38312,557,087 - 12,583,713 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl312,557,020 - 12,586,208 (+)Ensemblhg38GRCh38
GRCh37312,598,586 - 12,625,212 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36312,573,594 - 12,600,212 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34312,573,593 - 12,600,208NCBI
Celera312,535,907 - 12,563,538 (+)NCBICelera
Cytogenetic Map3p25.2NCBI
HuRef312,531,728 - 12,559,429 (+)NCBIHuRef
CHM1_1312,548,570 - 12,575,291 (+)NCBICHM1_1
T2T-CHM13v2.0312,554,891 - 12,582,517 (+)NCBIT2T-CHM13v2.0
Mkrn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396115,578,844 - 115,598,647 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6115,578,863 - 115,599,585 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386115,601,883 - 115,621,683 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6115,601,902 - 115,622,624 (+)Ensemblmm10GRCm38
MGSCv376115,551,956 - 115,568,688 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366115,567,557 - 115,584,289 (+)NCBIMGSCv36mm8
Celera6117,442,079 - 117,458,793 (+)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.61NCBI
Mkrn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542918,049,624 - 18,071,185 (-)Ensembl
ChiLan1.0NW_00495542918,049,617 - 18,070,526 (-)NCBIChiLan1.0ChiLan1.0
MKRN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2212,541,577 - 12,570,539 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1312,546,338 - 12,574,276 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0312,481,268 - 12,510,196 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1312,824,341 - 12,853,527 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl312,824,341 - 12,853,520 (+)EnsemblpanPan2panpan1.1
MKRN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1205,972,567 - 6,002,424 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl205,973,866 - 6,002,353 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha206,009,205 - 6,039,062 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0206,000,763 - 6,030,623 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl206,000,775 - 6,030,626 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1205,716,930 - 5,746,803 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0206,070,843 - 6,100,697 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0206,045,895 - 6,075,772 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mkrn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494217,765,643 - 17,795,434 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366021,114,832 - 1,144,251 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366021,114,271 - 1,144,045 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MKRN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1368,546,464 - 68,581,232 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11368,546,482 - 68,584,341 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21375,816,743 - 75,847,270 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MKRN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12248,532,155 - 48,559,373 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2248,532,205 - 48,558,949 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041117,940,139 - 117,969,026 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mkrn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624872183,446 - 204,956 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624872183,421 - 204,463 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mkrn2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1631,093,708 - 31,111,500 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mkrn2
141 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:98
Interacting mature miRNAs:115
Transcripts:ENSRNOT00000013146
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4149763204169799698Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4150095743159267220Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4117737142152833657Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4134199006168870974Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4148834094168870974Rat

Markers in Region
RH127364  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24148,679,257 - 148,679,472 (+)MAPPERmRatBN7.2
Rnor_6.04147,531,764 - 147,531,978NCBIRnor6.0
Rnor_5.04210,818,872 - 210,819,086UniSTSRnor5.0
RGSC_v3.44151,752,307 - 151,752,521UniSTSRGSC3.4
Celera4137,570,223 - 137,570,437UniSTS
RH 3.4 Map15457.3UniSTS
Cytogenetic Map4q42UniSTS
BI284862  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24148,679,723 - 148,679,931 (+)MAPPERmRatBN7.2
Rnor_6.04147,532,230 - 147,532,437NCBIRnor6.0
Rnor_5.04210,819,338 - 210,819,545UniSTSRnor5.0
RGSC_v3.44151,752,773 - 151,752,980UniSTSRGSC3.4
Celera4137,570,689 - 137,570,896UniSTS
RH 3.4 Map4950.71UniSTS
Cytogenetic Map4q42UniSTS
RH137569  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24148,678,552 - 148,678,802 (+)MAPPERmRatBN7.2
Rnor_6.04147,531,059 - 147,531,308NCBIRnor6.0
Rnor_5.04210,818,167 - 210,818,416UniSTSRnor5.0
RGSC_v3.44151,751,602 - 151,751,851UniSTSRGSC3.4
Celera4137,569,518 - 137,569,767UniSTS
Cytogenetic Map4q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000013146   ⟹   ENSRNOP00000013145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4150,343,046 - 150,352,263 (+)Ensembl
mRatBN7.2 Ensembl4148,670,498 - 148,679,642 (+)Ensembl
Rnor_6.0 Ensembl4147,514,120 - 147,532,084 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105331   ⟹   ENSRNOP00000090666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4148,671,008 - 148,679,642 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114812   ⟹   ENSRNOP00000091392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4150,334,142 - 150,352,263 (+)Ensembl
mRatBN7.2 Ensembl4148,661,553 - 148,679,642 (+)Ensembl
RefSeq Acc Id: NM_001008314   ⟹   NP_001008315
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,334,238 - 150,352,204 (+)NCBI
mRatBN7.24148,661,613 - 148,679,580 (+)NCBI
Rnor_6.04147,514,120 - 147,532,086 (+)NCBI
Rnor_5.04210,801,433 - 210,819,194 (+)NCBI
RGSC_v3.44151,734,327 - 151,752,629 (+)RGD
Celera4137,552,122 - 137,570,545 (+)RGD
Sequence:
RefSeq Acc Id: XM_039107421   ⟹   XP_038963349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,334,172 - 150,352,271 (+)NCBI
mRatBN7.24148,661,551 - 148,678,921 (+)NCBI
RefSeq Acc Id: XM_039107422   ⟹   XP_038963350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,343,389 - 150,352,271 (+)NCBI
mRatBN7.24148,670,765 - 148,678,921 (+)NCBI
RefSeq Acc Id: XM_039107423   ⟹   XP_038963351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,343,256 - 150,352,271 (+)NCBI
mRatBN7.24148,670,634 - 148,678,921 (+)NCBI
RefSeq Acc Id: XM_039107424   ⟹   XP_038963352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84150,334,164 - 150,352,271 (+)NCBI
mRatBN7.24148,661,529 - 148,678,921 (+)NCBI
RefSeq Acc Id: NP_001008315   ⟸   NM_001008314
- UniProtKB: Q5XI23 (UniProtKB/TrEMBL),   F7EMI5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000013145   ⟸   ENSRNOT00000013146
RefSeq Acc Id: XP_038963352   ⟸   XM_039107424
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038963349   ⟸   XM_039107421
- Peptide Label: isoform X1
- UniProtKB: A6IKY9 (UniProtKB/TrEMBL),   A0A8I6GIE7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963351   ⟸   XM_039107423
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GIE7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963350   ⟸   XM_039107422
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GIE7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090666   ⟸   ENSRNOT00000105331
Ensembl Acc Id: ENSRNOP00000091392   ⟸   ENSRNOT00000114812
Protein Domains
C3H1-type   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XI23-F1-model_v2 AlphaFold Q5XI23 1-417 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693323
Promoter ID:EPDNEW_R3848
Type:initiation region
Name:Mkrn2_1
Description:makorin, ring finger protein, 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04147,514,095 - 147,514,155EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310618 AgrOrtholog
BioCyc Gene G2FUF-43319 BioCyc
Ensembl Genes ENSRNOG00000009176 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013146.6 UniProtKB/TrEMBL
  ENSRNOT00000114812 ENTREZGENE
  ENSRNOT00000114812.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.1190 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Pneumovirus matrix protein 2 (M2), zinc-binding domain UniProtKB/TrEMBL
  Zinc finger, CCCH-type UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7128406 IMAGE-MGC_LOAD
InterPro MKRN-like UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report rno:297525 UniProtKB/TrEMBL
MGC_CLONE MGC:95133 IMAGE-MGC_LOAD
NCBI Gene 297525 ENTREZGENE
PANTHER PTHR11224 UniProtKB/TrEMBL
  PTHR11224:SF17 UniProtKB/TrEMBL
Pfam zf-CCCH UniProtKB/TrEMBL
  zf-CCCH_2 UniProtKB/TrEMBL
PhenoGen Mkrn2 PhenoGen
PROSITE ZF_C3H1 UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009176 RatGTEx
SMART RING UniProtKB/TrEMBL
  ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF90229 UniProtKB/TrEMBL
UniProt A0A8I6GIE7 ENTREZGENE
  A6IKY9 ENTREZGENE, UniProtKB/TrEMBL
  F7EMI5 ENTREZGENE, UniProtKB/TrEMBL
  Q5XI23 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Mkrn2  makorin, ring finger protein, 2  Mkrn2_predicted  makorin, ring finger protein, 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Mkrn2_predicted  makorin, ring finger protein, 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED