Vps8 (VPS8 subunit of CORVET complex) - Rat Genome Database

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Gene: Vps8 (VPS8 subunit of CORVET complex) Rattus norvegicus
Analyze
Symbol: Vps8
Name: VPS8 subunit of CORVET complex
RGD ID: 1309443
Description: Predicted to enable zinc ion binding activity. Predicted to be involved in endosomal vesicle fusion and protein targeting to vacuole. Predicted to be located in endosome. Predicted to be part of CORVET complex and HOPS complex. Predicted to be active in early endosome and late endosome. Orthologous to human VPS8 (VPS8 subunit of CORVET complex); INTERACTS WITH bisphenol A; decabromodiphenyl ether; paracetamol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC287990; RGD1309443; similar to mKIAA0804 protein; vacuolar protein sorting 8 homolog; vacuolar protein sorting 8 homolog (S. cerevisiae); vacuolar protein sorting-associated protein 8 homolog; VPS8 CORVET complex subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81192,906,702 - 93,140,844 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1192,906,700 - 93,138,570 (-)EnsemblGRCr8
mRatBN7.21179,402,236 - 79,634,234 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1179,402,239 - 79,634,133 (-)EnsemblmRatBN7.2
Rnor_6.01183,104,912 - 83,323,606 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,105,064 - 83,300,409 (-)Ensemblrn6Rnor6.0
Rnor_5.01186,184,133 - 86,400,369 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41181,635,546 - 81,866,781 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1178,253,172 - 78,478,852 (-)NCBICelera
RGSC_v3.11181,693,489 - 81,956,899 (-)NCBI
Cytogenetic Map11q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
Contracture  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
CORVET complex  (IBA,IEA,ISO)
early endosome  (IBA,IEA,ISO)
endosome  (IEA)
late endosome  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25266290  


Genomics

Comparative Map Data
Vps8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81192,906,702 - 93,140,844 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1192,906,700 - 93,138,570 (-)EnsemblGRCr8
mRatBN7.21179,402,236 - 79,634,234 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1179,402,239 - 79,634,133 (-)EnsemblmRatBN7.2
Rnor_6.01183,104,912 - 83,323,606 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,105,064 - 83,300,409 (-)Ensemblrn6Rnor6.0
Rnor_5.01186,184,133 - 86,400,369 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41181,635,546 - 81,866,781 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1178,253,172 - 78,478,852 (-)NCBICelera
RGSC_v3.11181,693,489 - 81,956,899 (-)NCBI
Cytogenetic Map11q23NCBI
VPS8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,812,166 - 185,052,614 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3184,812,113 - 185,054,009 (+)Ensemblhg38GRCh38
GRCh373184,529,954 - 184,770,402 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363186,012,625 - 186,253,096 (+)NCBIBuild 36Build 36hg18NCBI36
Celera3182,976,573 - 183,217,415 (+)NCBICelera
Cytogenetic Map3q27.2NCBI
HuRef3181,939,950 - 182,180,425 (+)NCBIHuRef
CHM1_13184,492,807 - 184,733,266 (+)NCBICHM1_1
T2T-CHM13v2.03187,627,968 - 187,868,623 (+)NCBIT2T-CHM13v2.0
Vps8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391621,241,859 - 21,463,431 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1621,241,868 - 21,463,430 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381621,423,118 - 21,644,681 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1621,423,118 - 21,644,680 (+)Ensemblmm10GRCm38
MGSCv371621,423,191 - 21,644,753 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361621,337,101 - 21,558,663 (+)NCBIMGSCv36mm8
Celera1621,989,997 - 22,212,312 (+)NCBICelera
Cytogenetic Map16B1NCBI
cM Map1612.69NCBI
Vps8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542022,504,440 - 22,715,094 (-)Ensembl
ChiLan1.0NW_00495542022,504,076 - 22,715,094 (-)NCBIChiLan1.0ChiLan1.0
VPS8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22182,666,542 - 182,928,965 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13182,671,258 - 182,933,681 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03181,850,827 - 182,089,846 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13190,329,884 - 190,567,701 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3190,329,567 - 190,567,700 (+)EnsemblpanPan2panpan1.1
VPS8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13417,632,749 - 17,889,607 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3417,632,208 - 17,889,036 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3421,718,439 - 21,975,304 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03417,541,151 - 17,798,080 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3417,541,174 - 17,798,080 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13417,577,616 - 17,834,488 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03417,573,242 - 17,830,270 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03417,802,258 - 18,060,093 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Vps8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602118,751,043 - 118,999,613 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365784,840,636 - 5,091,474 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365784,842,899 - 5,091,439 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13122,693,760 - 122,950,420 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113122,693,681 - 122,953,625 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213132,225,073 - 132,278,113 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VPS8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1154,368,144 - 4,607,691 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl154,367,706 - 4,607,656 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606313,129,642 - 13,374,062 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vps8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473071,545,939 - 71,767,178 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473071,544,572 - 71,782,622 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Vps8
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v146,112,700 - 6,310,722 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:322
Count of miRNA genes:113
Interacting mature miRNAs:122
Transcripts:ENSRNOT00000029255, ENSRNOT00000058274, ENSRNOT00000058276
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)119046178196556255Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)118295102896351019Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat

Markers in Region
D11Rat55  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81192,974,197 - 92,974,424 (+)Marker Load Pipeline
mRatBN7.21179,469,733 - 79,469,960 (+)MAPPERmRatBN7.2
Rnor_6.01183,172,413 - 83,172,639NCBIRnor6.0
Rnor_5.01186,251,638 - 86,251,864UniSTSRnor5.0
RGSC_v3.41181,703,067 - 81,703,293UniSTSRGSC3.4
RGSC_v3.41181,703,066 - 81,703,293RGDRGSC3.4
Celera1178,320,662 - 78,320,888UniSTS
RGSC_v3.11181,760,656 - 81,760,882RGD
RH 3.4 Map11654.4UniSTS
RH 3.4 Map11654.4RGD
SHRSP x BN Map1136.5499RGD
SHRSP x BN Map1136.5499UniSTS
Cytogenetic Map11q23UniSTS
RH132254  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21179,402,251 - 79,402,437 (+)MAPPERmRatBN7.2
Rnor_6.01183,104,928 - 83,105,113NCBIRnor6.0
Rnor_5.01186,184,153 - 86,184,338UniSTSRnor5.0
RGSC_v3.41181,635,566 - 81,635,751UniSTSRGSC3.4
Celera1178,253,188 - 78,253,373UniSTS
RH 3.4 Map11654.4UniSTS
Cytogenetic Map11q23UniSTS
BF387449  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21179,430,830 - 79,430,986 (+)MAPPERmRatBN7.2
Rnor_6.01183,133,505 - 83,133,660NCBIRnor6.0
Rnor_5.01186,212,730 - 86,212,885UniSTSRnor5.0
RGSC_v3.41181,664,144 - 81,664,299UniSTSRGSC3.4
Celera1178,281,759 - 78,281,914UniSTS
RH 3.4 Map11654.1UniSTS
Cytogenetic Map11q23UniSTS
BF399377  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21179,431,142 - 79,431,307 (+)MAPPERmRatBN7.2
Rnor_6.01183,133,817 - 83,133,981NCBIRnor6.0
Rnor_5.01186,213,042 - 86,213,206UniSTSRnor5.0
RGSC_v3.41181,664,456 - 81,664,620UniSTSRGSC3.4
Celera1178,282,071 - 78,282,235UniSTS
RH 3.4 Map11654.1UniSTS
Cytogenetic Map11q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000029255   ⟹   ENSRNOP00000030100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1192,906,702 - 93,138,570 (-)Ensembl
mRatBN7.2 Ensembl1179,402,239 - 79,598,216 (-)Ensembl
Rnor_6.0 Ensembl1183,105,064 - 83,300,409 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110575   ⟹   ENSRNOP00000077953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1192,906,700 - 93,138,570 (-)Ensembl
mRatBN7.2 Ensembl1179,404,881 - 79,624,222 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120068   ⟹   ENSRNOP00000092143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1192,906,702 - 93,138,570 (-)Ensembl
mRatBN7.2 Ensembl1179,402,239 - 79,634,133 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000125353   ⟹   ENSRNOP00000100644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1192,906,702 - 93,138,570 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000145153   ⟹   ENSRNOP00000108740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1192,906,702 - 93,138,570 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157844   ⟹   ENSRNOP00000105239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1192,906,702 - 93,138,570 (-)Ensembl
RefSeq Acc Id: NM_001427620   ⟹   NP_001414549
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81192,906,702 - 93,138,570 (-)NCBI
RefSeq Acc Id: XM_063270361   ⟹   XP_063126431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81192,906,702 - 93,138,501 (-)NCBI
RefSeq Acc Id: XM_063270362   ⟹   XP_063126432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81192,906,702 - 93,138,566 (-)NCBI
RefSeq Acc Id: XM_063270363   ⟹   XP_063126433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81192,906,702 - 93,138,542 (-)NCBI
RefSeq Acc Id: XM_063270364   ⟹   XP_063126434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81192,906,702 - 93,140,844 (-)NCBI
RefSeq Acc Id: XM_063270365   ⟹   XP_063126435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81192,906,702 - 93,138,500 (-)NCBI
RefSeq Acc Id: XM_063270366   ⟹   XP_063126436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81192,906,702 - 93,138,542 (-)NCBI
Ensembl Acc Id: ENSRNOP00000030100   ⟸   ENSRNOT00000029255
Ensembl Acc Id: ENSRNOP00000077953   ⟸   ENSRNOT00000110575
Ensembl Acc Id: ENSRNOP00000092143   ⟸   ENSRNOT00000120068
RefSeq Acc Id: XP_063126434   ⟸   XM_063270364
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AEY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414549   ⟸   NM_001427620
- UniProtKB: A0A8I6AEY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126432   ⟸   XM_063270362
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AEY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126436   ⟸   XM_063270366
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AEY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126433   ⟸   XM_063270363
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AEY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126431   ⟸   XM_063270361
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AEY8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126435   ⟸   XM_063270365
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AEY8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105239   ⟸   ENSRNOT00000157844
Ensembl Acc Id: ENSRNOP00000108740   ⟸   ENSRNOT00000145153
Ensembl Acc Id: ENSRNOP00000100644   ⟸   ENSRNOT00000125353
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A5F7-F1-model_v2 AlphaFold D4A5F7 1-1296 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309443 AgrOrtholog
BioCyc Gene G2FUF-20781 BioCyc
Ensembl Genes ENSRNOG00000001764 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029255.9 UniProtKB/TrEMBL
  ENSRNOT00000110575 ENTREZGENE
  ENSRNOT00000110575.2 UniProtKB/TrEMBL
  ENSRNOT00000120068.2 UniProtKB/TrEMBL
  ENSRNOT00000125353 ENTREZGENE
  ENSRNOT00000125353.1 UniProtKB/TrEMBL
  ENSRNOT00000145153.1 UniProtKB/TrEMBL
  ENSRNOT00000157844 ENTREZGENE
  ENSRNOT00000157844.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro Quino_amine_DH_bsu UniProtKB/TrEMBL
  Vps41/Vps8 UniProtKB/TrEMBL
  Vps8_central_dom UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_Vps8 UniProtKB/TrEMBL
NCBI Gene 287990 ENTREZGENE
PANTHER VACUOLAR PROTEIN SORTING VPS41 UniProtKB/TrEMBL
  VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 8 HOMOLOG UniProtKB/TrEMBL
Pfam Beta-prop_VPS8 UniProtKB/TrEMBL
  Vps8 UniProtKB/TrEMBL
  zf_RING_Vps8 UniProtKB/TrEMBL
PhenoGen Vps8 PhenoGen
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001764 RatGTEx
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF50969 UniProtKB/TrEMBL
  WD40_like UniProtKB/TrEMBL
UniProt A0A8I5XWN5_RAT UniProtKB/TrEMBL
  A0A8I6AEY8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LGL5_RAT UniProtKB/TrEMBL
  A0ABK0LTM2_RAT UniProtKB/TrEMBL
  A0ABK0M216_RAT UniProtKB/TrEMBL
  D4A5F7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 Vps8  VPS8 subunit of CORVET complex  Vps8  VPS8 CORVET complex subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-25 Vps8  VPS8 CORVET complex subunit  Vps8  vacuolar protein sorting 8 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-26 Vps8  vacuolar protein sorting 8 homolog (S. cerevisiae)  RGD1309443_predicted  similar to mKIAA0804 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1309443_predicted  similar to mKIAA0804 protein (predicted)  LOC287990_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC287990_predicted  similar to mKIAA0804 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL