St3gal1 (ST3 beta-galactoside alpha-2,3-sialyltransferase 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: St3gal1 (ST3 beta-galactoside alpha-2,3-sialyltransferase 1) Rattus norvegicus
Analyze
Symbol: St3gal1
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 1
RGD ID: 1309373
Description: Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to be involved in several processes, including ganglioside biosynthetic process via lactosylceramide; memory B cell differentiation; and negative regulation of activated CD8-positive, alpha-beta T cell apoptotic process. Predicted to be located in Golgi medial cisterna membrane; Golgi trans cisterna membrane; and trans-Golgi network membrane. Predicted to be active in membrane. Orthologous to human ST3GAL1 (ST3 beta-galactoside alpha-2,3-sialyltransferase 1); PARTICIPATES IN ganglioside metabolic pathway; globoside metabolic pathway; keratan sulfate biosynthetic pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1; LOC362924; sialyltransferase 4A (beta-galactoside alpha-2,3-sialytransferase); sialyltransferase ST3Gal-I; siat4A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87100,734,300 - 100,802,443 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7100,734,300 - 100,745,242 (-)EnsemblGRCr8
mRatBN7.2798,845,270 - 98,913,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl798,845,270 - 98,913,236 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7100,613,838 - 100,620,506 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07102,815,493 - 102,822,161 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07102,734,816 - 102,741,484 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07107,895,045 - 107,963,158 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7107,895,045 - 107,963,142 (-)Ensemblrn6Rnor6.0
Rnor_5.07107,844,100 - 107,912,117 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47104,467,678 - 104,474,345 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera795,394,954 - 95,401,620 (-)NCBICelera
RGSC_v3.17104,501,908 - 104,508,575 (-)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
chlormequat chloride  (EXP)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dimethyl sulfoxide  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
furan  (EXP)
gentamycin  (EXP)
lead diacetate  (ISO)
lithocholic acid  (ISO)
methamphetamine  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
nitrates  (ISO)
okadaic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pioglitazone  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propanal  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sotorasib  (ISO)
succimer  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
tetracycline  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trametinib  (ISO)
triphenyl phosphate  (EXP,ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
zinc protoporphyrin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8375377   PMID:9184827   PMID:12068010   PMID:12477932   PMID:14722111   PMID:15843597   PMID:19199708   PMID:19820709   PMID:19946888  


Genomics

Comparative Map Data
St3gal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87100,734,300 - 100,802,443 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7100,734,300 - 100,745,242 (-)EnsemblGRCr8
mRatBN7.2798,845,270 - 98,913,409 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl798,845,270 - 98,913,236 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7100,613,838 - 100,620,506 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07102,815,493 - 102,822,161 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07102,734,816 - 102,741,484 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07107,895,045 - 107,963,158 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7107,895,045 - 107,963,142 (-)Ensemblrn6Rnor6.0
Rnor_5.07107,844,100 - 107,912,117 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47104,467,678 - 104,474,345 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera795,394,954 - 95,401,620 (-)NCBICelera
RGSC_v3.17104,501,908 - 104,508,575 (-)NCBI
Cytogenetic Map7q34NCBI
ST3GAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388133,454,848 - 133,571,887 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8133,454,848 - 133,572,518 (-)Ensemblhg38GRCh38
GRCh378134,467,091 - 134,584,130 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368134,540,312 - 134,653,344 (-)NCBIBuild 36Build 36hg18NCBI36
Celera8130,644,441 - 130,761,532 (-)NCBICelera
Cytogenetic Map8q24.22NCBI
HuRef8129,786,027 - 129,903,172 (-)NCBIHuRef
CHM1_18134,508,613 - 134,625,711 (-)NCBICHM1_1
T2T-CHM13v2.08134,578,690 - 134,699,857 (-)NCBIT2T-CHM13v2.0
St3gal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391566,974,724 - 67,048,575 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1566,974,724 - 67,048,679 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381567,102,875 - 67,176,946 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1567,102,875 - 67,176,830 (-)Ensemblmm10GRCm38
MGSCv371566,934,437 - 67,008,444 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361566,932,544 - 66,943,661 (-)NCBIMGSCv36mm8
Celera1568,631,078 - 68,705,126 (-)NCBICelera
Cytogenetic Map15D2NCBI
cM Map1529.3NCBI
St3gal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554617,960,690 - 7,976,183 (-)Ensembl
ChiLan1.0NW_0049554617,960,901 - 8,036,221 (-)NCBIChiLan1.0ChiLan1.0
ST3GAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27150,845,512 - 150,961,719 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18126,359,998 - 126,476,139 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08130,111,085 - 130,227,195 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18133,084,835 - 133,200,568 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8133,084,835 - 133,119,791 (-)EnsemblpanPan2panpan1.1
ST3GAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11329,853,182 - 29,949,004 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1329,846,834 - 29,872,918 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1329,830,205 - 29,927,340 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01330,212,500 - 30,309,474 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1330,212,502 - 30,309,314 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11329,938,815 - 30,035,946 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01330,038,392 - 30,135,676 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01330,387,979 - 30,485,232 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
St3gal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053038,434,663 - 8,508,401 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647015,918,749 - 15,934,503 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647015,860,669 - 15,934,500 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl47,896,554 - 7,909,505 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.147,814,492 - 7,911,053 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.247,685,469 - 7,776,994 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ST3GAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18127,885,018 - 127,929,865 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8127,885,031 - 127,906,059 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603912,099,002 - 12,215,968 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St3gal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473522,528,976 - 22,589,666 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473522,510,500 - 22,589,666 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
St3gal1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11241,204,951 - 241,273,007 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in St3gal1
432 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:140
Count of miRNA genes:106
Interacting mature miRNAs:116
Transcripts:ENSRNOT00000010980
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
1331723Bw25Body weight QTL 253.348body mass (VT:0001259)body weight (CMO:0000012)796700404111672180Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000010980   ⟹   ENSRNOP00000010980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7107,895,109 - 107,963,142 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093353   ⟹   ENSRNOP00000076083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7100,734,300 - 100,745,242 (-)Ensembl
mRatBN7.2 Ensembl798,845,270 - 98,913,236 (-)Ensembl
Rnor_6.0 Ensembl7107,895,045 - 107,963,073 (-)Ensembl
RefSeq Acc Id: NM_001013219   ⟹   NP_001013237
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,734,300 - 100,802,285 (-)NCBI
mRatBN7.2798,845,270 - 98,913,258 (-)NCBI
Rnor_6.07107,898,761 - 107,905,428 (-)NCBI
Rnor_5.07107,844,100 - 107,912,117 (-)NCBI
RGSC_v3.47104,467,678 - 104,474,345 (-)RGD
Celera795,394,954 - 95,401,620 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241710   ⟹   XP_006241772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,734,300 - 100,802,138 (-)NCBI
mRatBN7.2798,845,270 - 98,913,112 (-)NCBI
Rnor_6.07107,895,045 - 107,962,921 (-)NCBI
Rnor_5.07107,844,100 - 107,912,117 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008765513   ⟹   XP_008763735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87100,734,300 - 100,802,443 (-)NCBI
mRatBN7.2798,845,270 - 98,913,409 (-)NCBI
Rnor_6.07107,895,045 - 107,963,158 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001013237 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241772 (Get FASTA)   NCBI Sequence Viewer  
  XP_008763735 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAG44449 (Get FASTA)   NCBI Sequence Viewer  
  EDM16140 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000076083
  ENSRNOP00000076083.3
RefSeq Acc Id: NP_001013237   ⟸   NM_001013219
- UniProtKB: Q6H8N0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241772   ⟸   XM_006241710
- Peptide Label: isoform X1
- UniProtKB: Q6H8N0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008763735   ⟸   XM_008765513
- Peptide Label: isoform X1
- UniProtKB: Q6H8N0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000076083   ⟸   ENSRNOT00000093353
Ensembl Acc Id: ENSRNOP00000010980   ⟸   ENSRNOT00000010980

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PSJ1-F1-model_v2 AlphaFold E9PSJ1 1-340 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695370
Promoter ID:EPDNEW_R5892
Type:initiation region
Name:St3gal1_1
Description:ST3 beta-galactoside alpha-2,3-sialyltransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07107,963,023 - 107,963,083EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309373 AgrOrtholog
BioCyc Gene G2FUF-33114 BioCyc
BioCyc Pathway PWY-7433 [mucin core 1 and core 2 O-glycosylation] BioCyc
BioCyc Pathway Image PWY-7433 BioCyc
Ensembl Genes ENSRNOG00000008209 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000093353 ENTREZGENE
  ENSRNOT00000093353.3 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Beta-gal_alpha2-3_sialyltrans UniProtKB/TrEMBL
  Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
KEGG Report rno:362924 UniProtKB/TrEMBL
NCBI Gene 362924 ENTREZGENE
PANTHER ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1 UniProtKB/TrEMBL
  CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLTRANSFERASE 1 UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PhenoGen St3gal1 PhenoGen
PIRSF Sialyl_trans UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008209 RatGTEx
UniProt A0A1W2Q5Z7_RAT UniProtKB/TrEMBL
  A6HRT2_RAT UniProtKB/TrEMBL
  Q6H8N0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 St3gal1  ST3 beta-galactoside alpha-2,3-sialyltransferase 1  Siat4a  sialyltransferase 4A (beta-galactoside alpha-2,3-sialytransferase)  Symbol and Name updated 1299863 APPROVED
2005-12-06 Siat4a  sialyltransferase 4A (beta-galactoside alpha-2,3-sialytransferase)  Siat4a_predicted  sialyltransferase 4A (beta-galactoside alpha-2,3-sialytransferase) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Siat4a_predicted  sialyltransferase 4A (beta-galactoside alpha-2,3-sialytransferase) (predicted)      Symbol and Name status set to approved 70820 APPROVED