Ppil1 (peptidylprolyl isomerase like 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Ppil1 (peptidylprolyl isomerase like 1) Rattus norvegicus
Analyze
Symbol: Ppil1
Name: peptidylprolyl isomerase like 1
RGD ID: 1309119
Description: Predicted to enable disordered domain specific binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in embryonic brain development; mRNA splicing, via spliceosome; and protein folding. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 14. Orthologous to human PPIL1 (peptidylprolyl isomerase like 1); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC309651; MGC116359; peptidyl-prolyl cis-trans isomerase-like 1; peptidylprolyl isomerase (cyclophilin)-like 1; peptidylprolyl isomerase-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,303,919 - 7,323,962 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl207,303,922 - 7,318,781 (-)EnsemblGRCr8
mRatBN7.2207,302,292 - 7,322,349 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,302,621 - 7,322,354 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx208,013,297 - 8,028,144 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,375,155 - 7,390,002 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,850,087 - 7,864,954 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,515,638 - 6,864,571 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,515,638 - 6,864,571 (-)Ensemblrn6Rnor6.0
Rnor_5.0208,760,182 - 8,761,633 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0209,102,772 - 9,104,606 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4207,548,896 - 7,565,640 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera208,852,048 - 8,866,821 (-)NCBICelera
RGSC_v3.1207,549,743 - 7,565,928 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-phenylbutyric acid  (ISO)
acrolein  (ISO)
acrylamide  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butyric acid  (ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
decabromodiphenyl ether  (EXP)
deguelin  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
doxorubicin  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
HC toxin  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
menadione  (ISO)
methoxychlor  (EXP)
miconazole  (ISO)
N,N-diethyl-m-toluamide  (EXP)
nitrates  (ISO)
Nutlin-3  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
urethane  (ISO)
Yessotoxin  (ISO)
zinc protoporphyrin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Splicing and beyond: the many faces of the Prp19 complex. Chanarat S and Strasser K, Biochim Biophys Acta. 2013 Oct;1833(10):2126-34. doi: 10.1016/j.bbamcr.2013.05.023. Epub 2013 Jun 3.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Spliceosomal immunophilins. Mesa A, etal., FEBS Lett. 2008 Jul 9;582(16):2345-51. doi: 10.1016/j.febslet.2008.06.006. Epub 2008 Jun 9.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:11991638   PMID:12477932   PMID:16595688   PMID:20007319   PMID:20676357   PMID:23376485   PMID:28076346  


Genomics

Comparative Map Data
Ppil1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8207,303,919 - 7,323,962 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl207,303,922 - 7,318,781 (-)EnsemblGRCr8
mRatBN7.2207,302,292 - 7,322,349 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl207,302,621 - 7,322,354 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx208,013,297 - 8,028,144 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0207,375,155 - 7,390,002 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,850,087 - 7,864,954 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0206,515,638 - 6,864,571 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl206,515,638 - 6,864,571 (-)Ensemblrn6Rnor6.0
Rnor_5.0208,760,182 - 8,761,633 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0209,102,772 - 9,104,606 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4207,548,896 - 7,565,640 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera208,852,048 - 8,866,821 (-)NCBICelera
RGSC_v3.1207,549,743 - 7,565,928 (-)NCBI
Cytogenetic Map20p12NCBI
PPIL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38636,854,829 - 36,874,803 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl636,854,825 - 36,875,003 (-)Ensemblhg38GRCh38
GRCh37636,822,605 - 36,842,579 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36636,930,583 - 36,950,747 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34636,930,585 - 36,950,747NCBI
Celera638,377,637 - 38,397,836 (-)NCBICelera
Cytogenetic Map6p21.2NCBI
HuRef636,540,910 - 36,561,109 (-)NCBIHuRef
CHM1_1636,824,537 - 36,844,718 (-)NCBICHM1_1
T2T-CHM13v2.0636,675,439 - 36,695,414 (-)NCBIT2T-CHM13v2.0
Ppil1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391729,469,809 - 29,482,945 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1729,469,777 - 29,483,160 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381729,250,835 - 29,263,971 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1729,250,803 - 29,264,186 (-)Ensemblmm10GRCm38
MGSCv371729,387,780 - 29,400,916 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361728,977,847 - 28,990,983 (-)NCBIMGSCv36mm8
Celera1729,800,905 - 29,814,390 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.15NCBI
Ppil1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554376,131,013 - 6,143,529 (+)Ensembl
ChiLan1.0NW_0049554376,131,013 - 6,143,474 (+)NCBIChiLan1.0ChiLan1.0
PPIL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2551,323,627 - 51,343,867 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1647,193,377 - 47,213,655 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0636,417,086 - 36,437,259 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1637,612,722 - 37,632,942 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl637,612,724 - 37,632,942 (-)EnsemblpanPan2panpan1.1
PPIL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,916,524 - 5,936,276 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,917,228 - 5,942,943 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha125,935,566 - 5,961,058 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0126,265,629 - 6,291,138 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl126,265,627 - 6,290,391 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,920,562 - 5,946,039 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0126,000,037 - 6,025,485 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0126,098,346 - 6,123,792 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ppil1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494641,389,370 - 41,407,501 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647622,552,566 - 22,571,001 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647622,552,484 - 22,570,860 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPIL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl732,522,733 - 32,547,839 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1732,522,736 - 32,547,874 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2737,426,210 - 37,451,342 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPIL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11735,260,471 - 35,281,367 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604436,798,831 - 36,819,128 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppil1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475420,976,515 - 20,985,393 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475420,976,765 - 20,985,408 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ppil1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1184,610,082 - 4,625,535 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ppil1
133 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:50
Interacting mature miRNAs:54
Transcripts:ENSRNOT00000068527
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
203J18-Sp6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2207,303,689 - 7,303,848 (+)MAPPERmRatBN7.2
Rnor_6.0206,517,033 - 6,517,191NCBIRnor6.0
Rnor_5.0208,761,577 - 8,761,735UniSTSRnor5.0
RGSC_v3.4207,550,291 - 7,550,449UniSTSRGSC3.4
Celera208,853,443 - 8,853,601UniSTS
Cytogenetic Map20p12UniSTS
RH127896  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2207,317,958 - 7,318,140 (+)MAPPERmRatBN7.2
Rnor_6.0206,865,375 - 6,865,556NCBIRnor6.0
Rnor_5.0209,105,410 - 9,105,591UniSTSRnor5.0
RGSC_v3.4207,566,442 - 7,566,623UniSTSRGSC3.4
Celera208,867,623 - 8,867,804UniSTS
RH 3.4 Map2077.5UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000068527   ⟹   ENSRNOP00000061533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl206,516,264 - 6,864,387 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093253   ⟹   ENSRNOP00000076232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl207,303,922 - 7,318,781 (-)Ensembl
mRatBN7.2 Ensembl207,302,621 - 7,322,354 (-)Ensembl
Rnor_6.0 Ensembl206,515,638 - 6,864,571 (-)Ensembl
RefSeq Acc Id: NM_001034188   ⟹   NP_001029360
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,303,919 - 7,318,781 (-)NCBI
mRatBN7.2207,302,295 - 7,317,157 (-)NCBI
Rnor_6.0206,515,638 - 6,864,571 (-)NCBI
Rnor_5.0208,760,182 - 8,761,633 (-)NCBI
Rnor_5.0209,102,772 - 9,104,606 (-)NCBI
RGSC_v3.4207,548,896 - 7,565,640 (-)RGD
Celera208,852,048 - 8,866,821 (-)RGD
Sequence:
RefSeq Acc Id: XM_063279147   ⟹   XP_063135217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,303,919 - 7,323,962 (-)NCBI
RefSeq Acc Id: XM_063279148   ⟹   XP_063135218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,303,919 - 7,323,962 (-)NCBI
RefSeq Acc Id: XM_063279149   ⟹   XP_063135219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8207,303,919 - 7,320,352 (-)NCBI
RefSeq Acc Id: NP_001029360   ⟸   NM_001034188
- UniProtKB: Q4KLI4 (UniProtKB/TrEMBL),   F7FJ93 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000061533   ⟸   ENSRNOT00000068527
Ensembl Acc Id: ENSRNOP00000076232   ⟸   ENSRNOT00000093253
RefSeq Acc Id: XP_063135218   ⟸   XM_063279148
- Peptide Label: isoform X1
- UniProtKB: F7FJ93 (UniProtKB/TrEMBL),   Q4KLI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135217   ⟸   XM_063279147
- Peptide Label: isoform X1
- UniProtKB: F7FJ93 (UniProtKB/TrEMBL),   Q4KLI4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135219   ⟸   XM_063279149
- Peptide Label: isoform X1
- UniProtKB: F7FJ93 (UniProtKB/TrEMBL),   Q4KLI4 (UniProtKB/TrEMBL)
Protein Domains
PPIase cyclophilin-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4KLI4-F1-model_v2 AlphaFold Q4KLI4 1-166 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701443
Promoter ID:EPDNEW_R11965
Type:multiple initiation site
Name:Ppil1_1
Description:peptidylprolyl isomerase like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0206,864,418 - 6,864,478EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309119 AgrOrtholog
BioCyc Gene G2FUF-4385 BioCyc
Ensembl Genes ENSRNOG00000000523 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000093253 ENTREZGENE
  ENSRNOT00000093253.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.100.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7383385 IMAGE-MGC_LOAD
InterPro Cyclophilin-like_dom UniProtKB/TrEMBL
  Cyclophilin-type_PPIase UniProtKB/TrEMBL
  Cyclophilin_A-like UniProtKB/TrEMBL
  Pep-Pro_Isoase_cyclophilin_CS UniProtKB/TrEMBL
  PPIase_cyclophilin UniProtKB/TrEMBL
KEGG Report rno:309651 UniProtKB/TrEMBL
MGC_CLONE MGC:116359 IMAGE-MGC_LOAD
NCBI Gene 309651 ENTREZGENE
PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR45625 UniProtKB/TrEMBL
Pfam Pro_isomerase UniProtKB/TrEMBL
PhenoGen Ppil1 PhenoGen
PIRSF Peptidylpro_ismrse UniProtKB/TrEMBL
PRINTS CSAPPISMRASE UniProtKB/TrEMBL
PROSITE CSA_PPIASE_1 UniProtKB/TrEMBL
  CSA_PPIASE_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000523 RatGTEx
Superfamily-SCOP SSF50891 UniProtKB/TrEMBL
UniProt A6JJU2_RAT UniProtKB/TrEMBL
  A6JJU3_RAT UniProtKB/TrEMBL
  F7FJ93 ENTREZGENE
  Q4KLI4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7FJ93 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 Ppil1  peptidylprolyl isomerase like 1  Ppil1  peptidylprolyl isomerase (cyclophilin)-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Ppil1  peptidylprolyl isomerase (cyclophilin)-like 1  Ppil1_predicted  peptidylprolyl isomerase (cyclophilin)-like 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ppil1_predicted  peptidylprolyl isomerase (cyclophilin)-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED