Hist1h2an (histone cluster 1, H2an) - Rat Genome Database

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Gene: Hist1h2an (histone cluster 1, H2an) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Hist1h2an (Ensembl: H4f3)
Name: histone cluster 1, H2an (Ensembl:H1.3 linker histone, cluster member)
RGD ID: 1309078
Description: Predicted to be a structural constituent of chromatin. Predicted to be involved in heterochromatin formation. Predicted to be located in chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H2AC4 (H2A clustered histone 4) and H2AC8 (H2A clustered histone 8); PARTICIPATES IN systemic lupus erythematosus pathway; INTERACTS WITH 1,2-dimethylhydrazine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: histone 1, H2an; LOC306970
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81741,961,533 - 41,963,297 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1741,961,379 - 41,968,019 (+)EnsemblGRCr8
mRatBN7.21741,534,653 - 41,535,259 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,534,691 - 41,539,869 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1741,615,299 - 41,615,905 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01743,219,365 - 43,219,971 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01741,493,811 - 41,494,417 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01743,779,174 - 43,779,775 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1744,794,130 - 44,794,522 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1743,779,174 - 43,779,775 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1744,758,460 - 44,758,852 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1744,520,537 - 44,520,929 (+)Ensemblrn6Rnor6.0
Celera1741,165,567 - 41,166,173 (+)NCBICelera
RGSC_v3.11750,355,603 - 50,387,125 (+)NCBI
Cytogenetic Map17p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
nucleosome  (IBA,IEA)
nucleus  (IBA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Hist1h2an
4 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)173803135483031354Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172266079955604694Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172149899450592236Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)173803135483031354Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)173544694975762341Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)173803135483031354Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173803135483031354Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173604553781045537Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)173310464578104645Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173219953449497050Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173219953455604694Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)173310464578104645Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)173768787782687877Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 62 156 91 90 59 86 59 6 330 180 10 134 67 77 31 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000077571   ⟹   ENSRNOP00000073576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1744,794,130 - 44,794,522 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077985   ⟹   ENSRNOP00000073632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1744,520,537 - 44,520,929 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089436   ⟹   ENSRNOP00000071032
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1744,758,460 - 44,758,852 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1743,779,174 - 43,779,775 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104913   ⟹   ENSRNOP00000094790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,534,691 - 41,539,869 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000134725   ⟹   ENSRNOP00000101232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1741,962,190 - 41,968,019 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000158781   ⟹   ENSRNOP00000109783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1741,961,379 - 41,964,202 (+)Ensembl
RefSeq Acc Id: NM_001107354   ⟹   NP_001100824
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,962,691 - 41,963,297 (+)NCBI
mRatBN7.21741,534,653 - 41,535,259 (+)NCBI
Rnor_6.01743,779,174 - 43,779,775 (+)NCBI
Celera1741,165,567 - 41,166,173 (+)RGD
Sequence:
RefSeq Acc Id: XM_063276447   ⟹   XP_063132517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81741,961,533 - 41,963,258 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001100824 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132517 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL86587 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000101232
  ENSRNOP00000109783
RefSeq Acc Id: NP_001100824   ⟸   NM_001107354
- UniProtKB: Q64598 (UniProtKB/Swiss-Prot),   G3V9C0 (UniProtKB/TrEMBL),   A6KLN9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073576   ⟸   ENSRNOT00000077571
Ensembl Acc Id: ENSRNOP00000071032   ⟸   ENSRNOT00000089436
Ensembl Acc Id: ENSRNOP00000073632   ⟸   ENSRNOT00000077985
Ensembl Acc Id: ENSRNOP00000094790   ⟸   ENSRNOT00000104913
RefSeq Acc Id: XP_063132517   ⟸   XM_063276447
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000101232   ⟸   ENSRNOT00000134725
Ensembl Acc Id: ENSRNOP00000109783   ⟸   ENSRNOT00000158781
Protein Domains
Histone H2A C-terminal   Histone H2A/H2B/H3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9C0-F1-model_v2 AlphaFold G3V9C0 1-130 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309078 AgrOrtholog
BioCyc Gene G2FUF-9365 BioCyc
Ensembl Genes ENSRNOG00000048264 Ensembl, ENTREZGENE
  ENSRNOG00000056411 Ensembl
  ENSRNOG00000057700 Ensembl
  ENSRNOG00000058437 Ensembl
  ENSRNOG00000059748 Ensembl
  ENSRNOG00000067434 Ensembl
Ensembl Transcript ENSRNOT00000134725 ENTREZGENE
  ENSRNOT00000158781 ENTREZGENE
Gene3D-CATH Histone, subunit A UniProtKB/Swiss-Prot
InterPro Histone-fold UniProtKB/Swiss-Prot
  Histone_H2A UniProtKB/Swiss-Prot
  Histone_H2A/H2B/H3 UniProtKB/Swiss-Prot
  Histone_H2A_C UniProtKB/Swiss-Prot
  Histone_H2A_CS UniProtKB/Swiss-Prot
NCBI Gene 306970 ENTREZGENE
PANTHER HISTONE H2A UniProtKB/Swiss-Prot
Pfam Histone UniProtKB/Swiss-Prot
  Histone_H2A_C UniProtKB/Swiss-Prot
PhenoGen Hist1h2an PhenoGen
PRINTS HISTONEH2A UniProtKB/Swiss-Prot
PROSITE HISTONE_H2A UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000048264 RatGTEx
  ENSRNOG00000056411 RatGTEx
  ENSRNOG00000057700 RatGTEx
  ENSRNOG00000058437 RatGTEx
  ENSRNOG00000059748 RatGTEx
  ENSRNOG00000067434 RatGTEx
SMART H2A UniProtKB/Swiss-Prot
Superfamily-SCOP Histone-fold UniProtKB/Swiss-Prot
UniProt A0A8L2QLK6_RAT UniProtKB/TrEMBL
  A0ABK0LW76_RAT UniProtKB/TrEMBL
  A6KLN9 ENTREZGENE, UniProtKB/TrEMBL
  G3V9C0 ENTREZGENE, UniProtKB/TrEMBL
  H2A1F_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Hist1h2an  histone cluster 1, H2an   Hist1h2an_predicted  histone cluster 1, H2an (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-07 Hist1h2an_predicted  histone cluster 1, H2an (predicted)    histone 1, H2an (predicted)  Name updated 1299863 APPROVED
2005-01-12 Hist1h2an_predicted  histone 1, H2an (predicted)      Symbol and Name status set to approved 70820 APPROVED