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Gene: Bms1 (BMS1 ribosome biogenesis factor) Rattus norvegicus

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Symbol:

Bms1

Name:

BMS1 ribosome biogenesis factor

RGD ID:

1308043

Description:

Predicted to enable GTP binding activity; GTPase activity; and U3 snoRNA binding activity. Predicted to be involved in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of small-subunit processome. Human ortholog(s) of this gene implicated in nonsyndromic aplasia cutis congenita. Orthologous to human BMS1 (BMS1 ribosome biogenesis factor); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

BMS1 homolog, ribosome assembly protein; BMS1 homolog, ribosome assembly protein (yeast); BMS1-like, ribosome assembly protein; BMS1-like, ribosome assembly protein (yeast); Bms1l; LOC362426; ribosome biogenesis protein BMS1 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BMS1 (BMS1 ribosome biogenesis factor)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Bms1 (BMS1, ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Bms1 (BMS1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BMS1 (BMS1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BMS1 (BMS1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bms1 (BMS1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BMS1 (BMS1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BMS1 (BMS1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bms1 (BMS1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Bms1 (BMS1 ribosome biogenesis factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Bms1 (BMS1, ribosome biogenesis factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	BMS1 (BMS1 ribosome biogenesis factor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	BMS1 (BMS1 ribosome biogenesis factor)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	bms1 (BMS1 ribosome biogenesis factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BMS1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7728	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y61A9LA.10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	bms1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	153,230,471 - 153,267,437 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	153,230,471 - 153,267,429 (-)	Ensembl				GRCr8
mRatBN7.2	4	151,558,163 - 151,595,187 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	151,558,163 - 151,595,127 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	157,821,518 - 157,857,787 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	153,605,181 - 153,641,448 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	152,228,528 - 152,264,795 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	150,433,567 - 150,471,783 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	150,433,570 - 150,471,834 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	216,359,608 - 216,395,631 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	154,687,169 - 154,721,783 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	140,428,894 - 140,464,833 (-)	NCBI		Celera
RGSC_v3.1	4	154,932,012 - 154,969,857 (-)	NCBI
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

ectodermal dysplasia (ISO)

nonsyndromic aplasia cutis congenita (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

diazinon (ISO)

dibutyl phthalate (ISO)

enzyme inhibitor (ISO)

folic acid (ISO)

FR900359 (ISO)

hydrogen peroxide (ISO)

indole-3-methanol (EXP)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

menadione (ISO)

methoxychlor (EXP)

nitrates (ISO)

Nivalenol (ISO)

PCB138 (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

rac-lactic acid (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

tolcapone (EXP)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (IBA)

maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (IBA)

ribosomal small subunit biogenesis (IEA,ISO)

ribosome biogenesis (IEA)

Cellular Component

90S preribosome (IBA)

chromosome (ISO)

nucleolus (IBA,IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA)

small-subunit processome (IBA,IEA,ISO)

Molecular Function

ATP binding (IEA)

GTP binding (IEA)

GTPase activity (IBA)

hydrolase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

RNA binding (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Comprehensive gene review and curation	RGD comprehensive gene curation
5.	The roles of SSU processome components and surveillance factors in the initial processing of human ribosomal RNA.	Sloan KE, etal., RNA. 2014 Apr;20(4):540-50. doi: 10.1261/rna.043471.113. Epub 2014 Feb 18.

Additional References at PubMed

PMID:12477932	PMID:22658674	PMID:22681889

Genomics

Comparative Map Data

Bms1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	153,230,471 - 153,267,437 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	153,230,471 - 153,267,429 (-)	Ensembl				GRCr8
mRatBN7.2	4	151,558,163 - 151,595,187 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	151,558,163 - 151,595,127 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	157,821,518 - 157,857,787 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	153,605,181 - 153,641,448 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	152,228,528 - 152,264,795 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	150,433,567 - 150,471,783 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	150,433,570 - 150,471,834 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	216,359,608 - 216,395,631 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	154,687,169 - 154,721,783 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	140,428,894 - 140,464,833 (-)	NCBI		Celera
RGSC_v3.1	4	154,932,012 - 154,969,857 (-)	NCBI
Cytogenetic Map	4	q42	NCBI

BMS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	42,782,795 - 42,834,937 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	42,782,783 - 42,834,937 (+)	Ensembl			hg38	GRCh38
GRCh37	10	43,278,243 - 43,330,385 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	42,598,265 - 42,646,856 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	42,598,264 - 42,646,855	NCBI
Celera	10	39,281,288 - 39,333,715 (+)	NCBI		Celera
Cytogenetic Map	10	q11.21	NCBI
HuRef	10	39,804,351 - 39,856,723 (+)	NCBI		HuRef
CHM1_1	10	43,317,039 - 43,369,460 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	43,660,231 - 43,712,380 (+)	NCBI		T2T-CHM13v2.0

Bms1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	118,360,342 - 118,396,772 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	118,360,342 - 118,396,435 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	118,383,381 - 118,419,802 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	118,383,381 - 118,419,474 (-)	Ensembl			mm10	GRCm38
MGSCv37	6	118,333,399 - 118,369,435 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	118,349,000 - 118,385,036 (-)	NCBI		MGSCv36	mm8
Celera	6	120,205,779 - 120,241,558 (-)	NCBI		Celera
Cytogenetic Map	6	F1	NCBI
cM Map	6	55.86	NCBI

Bms1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955546	1,054,209 - 1,092,327 (+)	Ensembl
ChiLan1.0	NW_004955546	1,054,208 - 1,089,048 (+)	NCBI	ChiLan1.0	ChiLan1.0

BMS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	55,496,708 - 55,546,250 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	55,502,023 - 55,551,579 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	39,757,627 - 39,806,401 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	42,942,439 - 42,983,304 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	42,944,081 - 42,990,235 (+)	Ensembl			panPan2	panpan1.1

BMS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	4,178,625 - 4,235,749 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	4,178,627 - 4,234,052 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	4,413,712 - 4,470,894 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	4,395,173 - 4,452,876 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	4,395,140 - 4,452,797 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	4,157,600 - 4,214,741 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	4,200,389 - 4,257,562 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	4,334,938 - 4,392,112 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Bms1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	84,098,623 - 84,153,392 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936617	2,636,222 - 2,686,456 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936617	2,636,273 - 2,685,524 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BMS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	61,087,670 - 61,125,980 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	61,056,075 - 61,125,984 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	65,917,854 - 65,956,269 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BMS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	38,459,322 - 38,503,090 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	38,459,237 - 38,505,560 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666056	47,986,334 - 48,030,992 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bms1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624922	173,652 - 212,107 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624922	173,616 - 209,170 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Bms1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	28,328,848 - 28,361,313 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Bms1
138 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	141
Count of miRNA genes:	121
Interacting mature miRNAs:	130
Transcripts:	ENSRNOT00000008741
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	149763204	169799698	Rat
61446	Coreg2	Compensatory renal growth QTL 2	3.5		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	4	150095743	159267220	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	111383604	156383604	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	111383604	156383604	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	148121375	176967367	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	148834094	168870974	Rat

Markers in Region

RH127627

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	151,592,226 - 151,592,428 (+)	MAPPER	mRatBN7.2
mRatBN7.2	2	3,973,381 - 3,973,584 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	1,452,381 - 1,452,583	NCBI	Rnor6.0
Rnor_6.0	4	150,468,883 - 150,469,084	NCBI	Rnor6.0
Rnor_5.0	4	216,392,744 - 216,392,945	UniSTS	Rnor5.0
Rnor_5.0	2	1,422,292 - 1,422,494	UniSTS	Rnor5.0
RGSC_v3.4	4	154,722,124 - 154,722,325	UniSTS	RGSC3.4
RGSC_v3.4	2	1,495,318 - 1,495,520	UniSTS	RGSC3.4
Celera	2	468,684 - 468,886	UniSTS
Celera	4	140,461,933 - 140,462,134	UniSTS
Cytogenetic Map	4	q42	UniSTS
Cytogenetic Map	2	q11	UniSTS

RH134071

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	151,558,205 - 151,558,394 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	150,433,610 - 150,433,798	NCBI	Rnor6.0
Rnor_5.0	4	216,359,651 - 216,359,839	UniSTS	Rnor5.0
RGSC_v3.4	4	154,687,212 - 154,687,400	UniSTS	RGSC3.4
Celera	4	140,428,937 - 140,429,125	UniSTS
RH 3.4 Map	4	971.4	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC092659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB545693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008741 ⟹ ENSRNOP00000008741

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	153,239,169 - 153,267,429 (-)	Ensembl
mRatBN7.2 Ensembl	4	151,566,864 - 151,595,127 (-)	Ensembl
Rnor_6.0 Ensembl	4	150,443,388 - 150,471,806 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076557 ⟹ ENSRNOP00000068043

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	153,230,471 - 153,267,429 (-)	Ensembl
mRatBN7.2 Ensembl	4	151,558,163 - 151,595,127 (-)	Ensembl
Rnor_6.0 Ensembl	4	150,443,667 - 150,471,834 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076679 ⟹ ENSRNOP00000068374

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	150,433,570 - 150,434,673 (-)	Ensembl

RefSeq Acc Id:

NM_001100751 ⟹ NP_001094221

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	153,230,471 - 153,267,429 (-)	NCBI
mRatBN7.2	4	151,558,163 - 151,595,127 (-)	NCBI
Rnor_6.0	4	150,433,567 - 150,471,783 (-)	NCBI
Rnor_5.0	4	216,359,608 - 216,395,631 (-)	NCBI
Celera	4	140,428,894 - 140,464,833 (-)	NCBI

Sequence:

show sequence

TTTCCGTTGTCGTGCTTGCGTGCTTGAGCGGTTGCTGCTGTGAACCTGAGTGCTTTCGCGAGCC
CCGTGGGTGCCGTCAGTCGGATTCCCGGTGAGACTTATTTGTAGTTGATAAATAGCCACCATGG
AGGCCACGGATCACAAGAAACACAGGAAGAAGCACAGTGGGCCTAAAGCTGAGAAGAAAAAGAA
AAGGCACCTGCAGGATCTACAGCTTGGAGATGAGGAGGATGCCCGGAAGAGAAACCCCAAAGCT
TTTGCCGTGCAGTCTGCTGTGCGCATGGCGCGGTCCTTTCACAGGACTCAGGACCTAAAGACGA
AAAGGCATCATATTCCAGTGGTTGACCGAACTCCACTGGAGCCCCCACCAATAGTGGTAGTGGT
GATGGGCCCTCCAAAAGTTGGAAAGAGTACCTTGATACGGTGCCTGATTCGGAATTTTACCAGA
CAGAAGTTGAGTGAGATCAGAGGCCCTGTGACAATTGTGTCAGGTAAAAAGCGCAGACTTACCA
TTATTGAGTGTGGGTGTGACATCAACGTAATGATTGACCTAGCTAAAGTAGCAGATCTGGTGCT
AATGCTTATAGATGCCAGCTTTGGCTTTGAAATGGAGACATTTGAGTTTCTAAACATTTGTCAA
GTACATGGCTTTCCTAAAATTATGGGAGTTCTCACCCACTTGGACTCCTTCAAGCACAACAAGC
AACTTAAGAAGACAAAGAAGCGCTTAAAGCATAGATTCTGGACAGAAGTCTACCCGGGTGCCAA
GCTGTTCTACCTTTCTGGAATGGTTCATGGAGAGTATCAGAACCAAGAGATTCACAACCTGGGC
AGATTTATCACAGTTATGAAGTTTCGGCCTCTCACATGGCAAACTTCTCATCCTTACATCCTGG
CAGACAGGATGGAAGATTTGACAAACCCTGAGGATATCCGCACAAACATCAAGTGTGACCGGAA
GGTGTCTCTTTATGGTTATTTACGAGGAGCCTACCTGAAGACTAACAGCCAGATCCACATGCCA
GGTGTAGGAGATTTTGTCGCCAGCGATGTCAGTTTTCTCCCAGACCCCTGTGCCCTTCCGGAAC
AGCAAAAGAAGCGCTGTTTGAATGAGAAGGAAAAGCTGGTTTATGCACCTCTCTCTGGGGTTGG
GGGTGTGCTCTATGACAAAGATGCTGTCTATGTTGACCTGGGTGGCAGCCATGGCTTCCAGACA
GTGGAGGAAGCAGGCCCTACACATGAACTGGTCCAGAGCCTCATCTCCACCCATGCCAGTATCG
ATGCTAAGATGGCTTCAAGCAGAGTGACACTTTTCTCTGACTCCAGACCTCTGGGGTCAGAAGA
CGTCGACAGTCAAGGGCTGTGGATGCCAAAGGAGGAAAAGCAGGTGGACGTGGAAACGGGCCGA
GTGCGTCGGAAAGCCGTTTTTGGAGACACGGAAGAAGAGTCTGGAGATGACGATAGTGAAGGAG
ATGAAGATGAAATGTCGGACGATGACGGGATGGAAAATGGCTCTAGTGATGATGAGGTGGAAGA
GGAAGAAGGTGCTAAAAGCAGCAGCTGTAAATACACAACTGTTAGGGGACACAAACGACCAAAA
CTTGAGGAGCAGGAAGAAGACAGTGAGGCAGATTTGCCGGCGTTTGCTGATAGCGATGATGATC
TTGAGAGAAGCTCTGGGGGAGAGGAGGAGGCAGAGGAAGCAGATGAAAGCAGTGCTGACGGTGC
CTCCACAGGAGAGAGGGACACTGGGGAAGCCAGCTCTGTTGGAGGAGCTCGTGGGGCAAGACCG
CCAGCAGCTCACCAGTGGGGGCCCCATCCGGATGGACAGAAGCCTTCCCCAGTGAGAAAAGCAG
CCCTCACCACTTCTGATTCTGGTCACTGTACAGCCGAAGAGGCATTTCCATCTGAAGATGAGTC
TGAGGAATCTGAACTCAGTTCAGAGGAAGAAGACTCAGAACACAAAGAGGTTGGGGGAACAAAT
CCTCAGCAGCACAGAGGACAGAAACCCGAGTCAGAGAACGTGGGTGATGAGACCAGCGACATTG
AAAATTTACTCAAAGAGGAAGAAGATCACAAGGAGGAAAATAGCAGCTCTGTAGAAACGTCAGG
TGCCCTCAAGTGGAAGGAAGACCTCTCCAGGAAAGCAGCGGAAGCGTTTCTGAGGCAGCAGCAA
GCAGCTCCGAATCTTCGAAAGCTGATTTATGGGACAGTGACAGAGGATAATGAAGATGAGGATG
GCGATGCCTCAGAAGAGCTCGGAGGGCTGTTCCGTGTCAGCCAGCCAGATAAAGGGTGTAAGCA
CAAGGCTGACTCTCTCGACTGCTCCAGATTTCATGTGGAGGCACCTCATGATTGGGATTTAGAG
GAGGTTATGAACAGCATCAGAGATTGCTTTGTGACTGGGAAATGGGAAGATGATAAAGATGCAG
CCAAGCTCTTAGCAGAAGACGAAGAGCTCTATGGTGACTTTGAAGACCTAGAAACGGGGGACGT
GCACAAGGGAAAACCGGGCCTGGATACTCAGAGTGAAGACATAGAAGAAGAAGAGGAAGTGAAG
GAAGAAACTGGCCCAGCTGAGGAGGAGAGTGCTAGGGAAAAGCATCTGAACAAGAAGAGAAAGC
TGAAGGAGCTGTTTGATGCAGAGTACGATGAAGGAGAAAGCACGTACTTTGATGATCTTAAGGG
TGAGATGCAGAGACAAGCACAGCTTAACCAGGCTGAATTTGAAGATCAAGATGATGAAACCAGA
GTTCAGTATGAAGGGTTTCGGCCTGGCATGTATGTCCGGATTGAGATTGAAAACATCCCCTGTG
AATTTGTGCAGAACTTTGACCCACACTACCCGATTATTCTGGGTGGTTTGGGCAACAGTGAGGG
CACTGTGGGATATGTGCAGATGCGCCTCAAGAAACATCGCTGGTATAAGAAAATCCTCAAGTCT
CGAGACCCAGTTATTTTCTCTGTGGGATGGAGGAGGTTTCAGACTATCCCACTGTATTATATCG
AAGACCACAATGGAAGACAGAGGCTTCTGAAATACACCCCGCAGCACATGCATTGTGGAGCAAC
TTTTTGGGGTCCTATCACCCCACAAGGAACTGGGTTTTTGGCGATACAGTCTGTCAGTGGCGCA
ATGCCTGAGTTTCGGATCGCTGCCACTGGAGTTGTCCTTGATCTGGATAAATCCATAAAAATCG
TGAAAAAATTAAAGCTAACTGGTTTTCCTTTTAAAATATTCAAGAATACTTCATTTATTAAGGG
AATGTTTAATTCTGCGTTGGAAGTAGCCAAATTTGAAGGTGCTGTCATTCGAACTGTCAGTGGA
ATAAGGGGACAGATCAAGAAAGCACTCCGGGCTCCAGAAGGGGCCTTCCGCGCTAGCTTTGAGG
ACAAGTTGCTAATGAGTGATATTGTTTTCATGCGAACTTGGTATCCTGTCTCCATTCCGGCCTT
CTATAATCCAGTAACATCTTTGTTGAAGCCAGTGGGTGAGAAAGACACCTGGTCAGGAATGCGG
ACAACGCATCAGCTGAGGCTTGCCCATGGAATCAAATTAAAGCCAAACAAGGATTCATTGTATA
AGCCAATCCTGAGGCAAAAGAAACATTTTAATTCACTGCACATTCCCAAAGCCTTGCAGAAGGC
TCTGCCATTTAAGAATAAACCCAAGACCCAAGCAAAGGCTGGCAAAGTGCCAAGGGACAGGCAG
AGACCGGCGGTCATACGTGAACCTCATGAGAGGAAGGTCTTGGCTCTGCTAGATGCTCTGAGCA
CAATACACGGTCAGAAAATGAAGAAGGCCAAAGAGCAGAGACACCTGCACAACAAGGAGCATGT
GAAGATGAAGCAGAAGGAGGAGGAGGAGAAGCTGAGGCGGCAGAAGGACCTGAGGAAGAAGCTC
TTCCGGATCCAGGGTCAGAAGGAAAAACGAAGTCAGAAGTCTAGTCTAAGAGGAGCCGAGGCCA
CCTGAAGTATCTCCAGAGTGGAGGGGTGTCTTCCAGAGCTGCAGCCGTGGTGGCTTCAGTGTCT
GTGACAGTCATGATGAGAGCCCGTGGAGACTCTGGGATGTGTGGTCCAGCTGAGCCTGGAGCAG
CATAGAAAGACTGCATCCCCGCTCGTTCACAGCATCCAGTGAGTCAGGGGTCACGGATGGGAAA
CTTAGGGCTTTGTGAATTAACTCATTGCTTATTCCTGTCTTGGTTTATTTTGTGCTATAAAAAT
ATTAAACTATTTTTCCATTTTCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039107867 ⟹ XP_038963795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	153,230,473 - 153,267,437 (-)	NCBI
mRatBN7.2	4	151,558,163 - 151,595,174 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001094221	(Get FASTA)	NCBI Sequence Viewer
	XP_038963795	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92659	(Get FASTA)	NCBI Sequence Viewer
	AAI66492	(Get FASTA)	NCBI Sequence Viewer
	EDM02077	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008741.6
	ENSRNOP00000068043
	ENSRNOP00000068043.2

RefSeq Acc Id:

NP_001094221 ⟸ NM_001100751

- UniProtKB:

A0A096MJ94 (UniProtKB/TrEMBL), A6IL62 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEATDHKKHRKKHSGPKAEKKKKRHLQDLQLGDEEDARKRNPKAFAVQSAVRMARSFHRTQDLK
TKRHHIPVVDRTPLEPPPIVVVVMGPPKVGKSTLIRCLIRNFTRQKLSEIRGPVTIVSGKKRRL
TIIECGCDINVMIDLAKVADLVLMLIDASFGFEMETFEFLNICQVHGFPKIMGVLTHLDSFKHN
KQLKKTKKRLKHRFWTEVYPGAKLFYLSGMVHGEYQNQEIHNLGRFITVMKFRPLTWQTSHPYI
LADRMEDLTNPEDIRTNIKCDRKVSLYGYLRGAYLKTNSQIHMPGVGDFVASDVSFLPDPCALP
EQQKKRCLNEKEKLVYAPLSGVGGVLYDKDAVYVDLGGSHGFQTVEEAGPTHELVQSLISTHAS
IDAKMASSRVTLFSDSRPLGSEDVDSQGLWMPKEEKQVDVETGRVRRKAVFGDTEEESGDDDSE
GDEDEMSDDDGMENGSSDDEVEEEEGAKSSSCKYTTVRGHKRPKLEEQEEDSEADLPAFADSDD
DLERSSGGEEEAEEADESSADGASTGERDTGEASSVGGARGARPPAAHQWGPHPDGQKPSPVRK
AALTTSDSGHCTAEEAFPSEDESEESELSSEEEDSEHKEVGGTNPQQHRGQKPESENVGDETSD
IENLLKEEEDHKEENSSSVETSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEDE
DGDASEELGGLFRVSQPDKGCKHKADSLDCSRFHVEAPHDWDLEEVMNSIRDCFVTGKWEDDKD
AAKLLAEDEELYGDFEDLETGDVHKGKPGLDTQSEDIEEEEEVKEETGPAEEESAREKHLNKKR
KLKELFDAEYDEGESTYFDDLKGEMQRQAQLNQAEFEDQDDETRVQYEGFRPGMYVRIEIENIP
CEFVQNFDPHYPIILGGLGNSEGTVGYVQMRLKKHRWYKKILKSRDPVIFSVGWRRFQTIPLYY
IEDHNGRQRLLKYTPQHMHCGATFWGPITPQGTGFLAIQSVSGAMPEFRIAATGVVLDLDKSIK
IVKKLKLTGFPFKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGAFRASF
EDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTHQLRLAHGIKLKPNKDSL
YKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPRDRQRPAVIREPHERKVLALLDAL
STIHGQKMKKAKEQRHLHNKEHVKMKQKEEEEKLRRQKDLRKKLFRIQGQKEKRSQKSSLRGAE
AT

hide sequence

Ensembl Acc Id:

ENSRNOP00000008741 ⟸ ENSRNOT00000008741

Ensembl Acc Id:

ENSRNOP00000068374 ⟸ ENSRNOT00000076679

Ensembl Acc Id:

ENSRNOP00000068043 ⟸ ENSRNOT00000076557

RefSeq Acc Id:	XP_038963795 ⟸ XM_039107867
- Peptide Label:	isoform X1
- UniProtKB:	A0A096MJ94 (UniProtKB/TrEMBL), A6IL62 (UniProtKB/TrEMBL)

Protein Domains

Bms1-type G Ribosome biogenesis protein BMS1/TSR1 C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PTV4-F1-model_v2	AlphaFold	E9PTV4	1-1064	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693347

Promoter ID:

EPDNEW_R3870

Type:

multiple initiation site

Name:

Bms1_1

Description:

BMS1 ribosome biogenesis factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	150,471,775 - 150,471,835	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308043	AgrOrtholog
BioCyc Gene	G2FUF-43234	BioCyc
Ensembl Genes	ENSRNOG00000006576	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000008741.10	UniProtKB/TrEMBL
	ENSRNOT00000076557	ENTREZGENE
	ENSRNOT00000076557.3	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7110317	IMAGE-MGC_LOAD
	IMAGE:7321247	IMAGE-MGC_LOAD
InterPro	AARP2CN	UniProtKB/TrEMBL
	Bms1/Tsr1	UniProtKB/TrEMBL
	Bms1_N	UniProtKB/TrEMBL
	BMS1_TSR1_C	UniProtKB/TrEMBL
	G_Bms1/Tsr1_dom	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
KEGG Report	rno:362426	UniProtKB/TrEMBL
MGC_CLONE	MGC:109469	IMAGE-MGC_LOAD
	MGC:188019	IMAGE-MGC_LOAD
NCBI Gene	362426	ENTREZGENE
PANTHER	PTHR12858	UniProtKB/TrEMBL
	RIBOSOME BIOGENESIS PROTEIN BMS1 HOMOLOG	UniProtKB/TrEMBL
Pfam	AARP2CN	UniProtKB/TrEMBL
	DUF663	UniProtKB/TrEMBL
PhenoGen	Bms1	PhenoGen
PROSITE	G_BMS1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006576	RatGTEx
SMART	AARP2CN	UniProtKB/TrEMBL
	DUF663	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A096MJ94	ENTREZGENE, UniProtKB/TrEMBL
	A6IL62	ENTREZGENE, UniProtKB/TrEMBL
	B2GV18_RAT	UniProtKB/TrEMBL
	E9PTV4_RAT	UniProtKB/TrEMBL
	Q561Z9_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-09-12	Bms1	BMS1 ribosome biogenesis factor	Bms1	BMS1 homolog, ribosome assembly protein (yeast)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-03	Bms1	BMS1 homolog, ribosome assembly protein (yeast)	Bms1l	BMS1-like, ribosome assembly protein (yeast)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Bms1l	BMS1-like, ribosome assembly protein (yeast)	Bms1l_predicted	BMS1-like, ribosome assembly protein (yeast) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Bms1l_predicted	BMS1-like, ribosome assembly protein (yeast) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)