Pacsin3 (protein kinase C and casein kinase substrate in neurons 3) - Rat Genome Database

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Gene: Pacsin3 (protein kinase C and casein kinase substrate in neurons 3) Rattus norvegicus
Analyze
Symbol: Pacsin3
Name: protein kinase C and casein kinase substrate in neurons 3
RGD ID: 1307327
Description: Predicted to enable several functions, including calcium channel inhibitor activity; identical protein binding activity; and phospholipid binding activity. Predicted to be involved in several processes, including negative regulation of calcium ion transport; plasma membrane tubulation; and positive regulation of membrane protein ectodomain proteolysis. Predicted to act upstream of or within negative regulation of endocytosis. Predicted to be active in endosome and plasma membrane. Orthologous to human PACSIN3 (protein kinase C and casein kinase substrate in neurons 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC311187; protein kinase C and casein kinase II substrate protein 3; SdpIII; syndapin III
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,683,054 - 97,691,619 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl397,679,244 - 97,691,628 (+)EnsemblGRCr8
mRatBN7.2377,227,187 - 77,235,820 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl377,222,710 - 77,235,811 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx380,705,464 - 80,714,024 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0389,304,479 - 89,313,039 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0387,155,613 - 87,164,184 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0380,072,425 - 80,081,058 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl380,072,489 - 80,081,047 (+)Ensemblrn6Rnor6.0
Rnor_5.0386,780,541 - 86,789,813 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4375,611,040 - 75,619,605 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera376,433,959 - 76,442,528 (+)NCBICelera
RGSC_v3.1375,511,254 - 75,515,587 (+)NCBI
Cytogenetic Map3q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)
cytosol  (IEA,ISO)
endosome  (IBA)
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11082044   PMID:12477932   PMID:15280379   PMID:16627472   PMID:18174177   PMID:19056867   PMID:22573331   PMID:23236520   PMID:23376485   PMID:23533145   PMID:31820147   PMID:35352799  


Genomics

Comparative Map Data
Pacsin3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,683,054 - 97,691,619 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl397,679,244 - 97,691,628 (+)EnsemblGRCr8
mRatBN7.2377,227,187 - 77,235,820 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl377,222,710 - 77,235,811 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx380,705,464 - 80,714,024 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0389,304,479 - 89,313,039 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0387,155,613 - 87,164,184 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0380,072,425 - 80,081,058 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl380,072,489 - 80,081,047 (+)Ensemblrn6Rnor6.0
Rnor_5.0386,780,541 - 86,789,813 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4375,611,040 - 75,619,605 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera376,433,959 - 76,442,528 (+)NCBICelera
RGSC_v3.1375,511,254 - 75,515,587 (+)NCBI
Cytogenetic Map3q24NCBI
PACSIN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,177,522 - 47,186,434 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,177,520 - 47,187,487 (-)Ensemblhg38GRCh38
GRCh371147,199,073 - 47,207,985 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,155,654 - 47,164,534 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341147,155,660 - 47,164,534NCBI
Celera1147,338,301 - 47,347,238 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1146,898,049 - 46,906,986 (-)NCBIHuRef
CHM1_11147,197,807 - 47,206,741 (-)NCBICHM1_1
T2T-CHM13v2.01147,334,276 - 47,343,188 (-)NCBIT2T-CHM13v2.0
Pacsin3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39291,086,215 - 91,095,025 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl291,086,299 - 91,095,024 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38291,255,875 - 91,264,680 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl291,255,954 - 91,264,679 (+)Ensemblmm10GRCm38
MGSCv37291,096,970 - 91,104,836 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36291,053,440 - 91,065,517 (+)NCBIMGSCv36mm8
Celera292,642,292 - 92,650,140 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.61NCBI
Pacsin3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955422989,605 - 995,140 (+)Ensembl
ChiLan1.0NW_004955422989,605 - 995,140 (+)NCBIChiLan1.0ChiLan1.0
PACSIN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2949,377,358 - 49,386,313 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11149,397,164 - 49,406,067 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,122,620 - 47,131,559 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11147,676,432 - 47,685,362 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,676,432 - 47,684,485 (-)EnsemblpanPan2panpan1.1
PACSIN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,378,692 - 42,399,225 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,389,951 - 42,398,924 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1841,107,149 - 41,127,919 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01843,032,479 - 43,053,469 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1843,044,881 - 43,053,469 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11842,519,000 - 42,539,778 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01842,073,947 - 42,094,718 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01842,803,847 - 42,824,628 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pacsin3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,877,198 - 19,883,975 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365621,989,662 - 1,995,580 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365621,988,839 - 1,995,597 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PACSIN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl215,381,707 - 15,389,887 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1215,380,297 - 15,389,893 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2216,604,963 - 16,613,448 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PACSIN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,125,207 - 18,135,866 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,130,727 - 18,135,454 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038115,428,210 - 115,437,090 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pacsin3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247671,505,633 - 1,512,610 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247671,505,617 - 1,512,606 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pacsin3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1565,418,440 - 65,426,351 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pacsin3
43 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:58
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000057176
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
AW413130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2377,235,452 - 77,235,539 (+)MAPPERmRatBN7.2
Rnor_6.0380,080,691 - 80,080,777NCBIRnor6.0
Rnor_5.0386,789,444 - 86,789,530UniSTSRnor5.0
RGSC_v3.4375,619,242 - 75,619,328UniSTSRGSC3.4
Celera376,442,165 - 76,442,251UniSTS
Cytogenetic Map3q24UniSTS
RH128846  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2377,235,522 - 77,235,727 (+)MAPPERmRatBN7.2
Rnor_6.0380,080,761 - 80,080,965NCBIRnor6.0
Rnor_5.0386,789,514 - 86,789,718UniSTSRnor5.0
RGSC_v3.4375,619,312 - 75,619,516UniSTSRGSC3.4
Celera376,442,235 - 76,442,439UniSTS
Cytogenetic Map3q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 69 59 6 333 169 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000057176   ⟹   ENSRNOP00000054003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl397,683,885 - 97,691,628 (+)Ensembl
mRatBN7.2 Ensembl377,227,217 - 77,235,811 (+)Ensembl
Rnor_6.0 Ensembl380,072,489 - 80,081,033 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000080266   ⟹   ENSRNOP00000070437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl397,683,370 - 97,691,628 (+)Ensembl
mRatBN7.2 Ensembl377,227,379 - 77,235,811 (+)Ensembl
Rnor_6.0 Ensembl380,075,991 - 80,081,047 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118900   ⟹   ENSRNOP00000095722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl397,679,244 - 97,691,628 (+)Ensembl
mRatBN7.2 Ensembl377,222,710 - 77,235,811 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000157559   ⟹   ENSRNOP00000099585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl397,683,370 - 97,691,616 (+)Ensembl
RefSeq Acc Id: NM_001009966   ⟹   NP_001009966
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,683,054 - 97,691,619 (+)NCBI
mRatBN7.2377,227,249 - 77,235,816 (+)NCBI
Rnor_6.0380,072,489 - 80,081,054 (+)NCBI
Rnor_5.0386,780,541 - 86,789,813 (+)NCBI
RGSC_v3.4375,611,040 - 75,619,605 (+)RGD
Celera376,433,959 - 76,442,528 (+)RGD
Sequence:
RefSeq Acc Id: XM_063283658   ⟹   XP_063139728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,683,514 - 97,691,619 (+)NCBI
RefSeq Acc Id: XM_063283659   ⟹   XP_063139729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,683,529 - 97,691,619 (+)NCBI
RefSeq Acc Id: XM_063283660   ⟹   XP_063139730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,686,273 - 97,691,619 (+)NCBI
RefSeq Acc Id: NP_001009966   ⟸   NM_001009966
- UniProtKB: G3V9N7 (UniProtKB/TrEMBL),   A6HNC1 (UniProtKB/TrEMBL),   Q5I2Z0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070437   ⟸   ENSRNOT00000080266
Ensembl Acc Id: ENSRNOP00000054003   ⟸   ENSRNOT00000057176
Ensembl Acc Id: ENSRNOP00000095722   ⟸   ENSRNOT00000118900
RefSeq Acc Id: XP_063139728   ⟸   XM_063283658
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JXX4 (UniProtKB/TrEMBL),   Q5I2Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139729   ⟸   XM_063283659
- Peptide Label: isoform X2
- UniProtKB: Q5I2Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139730   ⟸   XM_063283660
- Peptide Label: isoform X3
- UniProtKB: A6HNC1 (UniProtKB/TrEMBL),   G3V9N7 (UniProtKB/TrEMBL),   Q5I2Z0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000099585   ⟸   ENSRNOT00000157559
Protein Domains
F-BAR   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9N7-F1-model_v2 AlphaFold G3V9N7 1-424 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692213
Promoter ID:EPDNEW_R2736
Type:initiation region
Name:Pacsin3_1
Description:protein kinase C and casein kinase substrate in neurons 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R2737  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0380,072,477 - 80,072,537EPDNEW
RGD ID:13692226
Promoter ID:EPDNEW_R2737
Type:initiation region
Name:Pacsin3_2
Description:protein kinase C and casein kinase substrate in neurons 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R2736  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0380,075,992 - 80,076,052EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307327 AgrOrtholog
BioCyc Gene G2FUF-48740 BioCyc
Ensembl Genes ENSRNOG00000014204 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057176 ENTREZGENE
  ENSRNOT00000057176.6 UniProtKB/TrEMBL
  ENSRNOT00000080266 ENTREZGENE
  ENSRNOT00000080266.3 UniProtKB/TrEMBL
  ENSRNOT00000118900.2 UniProtKB/TrEMBL
  ENSRNOT00000157559 ENTREZGENE
  ENSRNOT00000157559.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5620884 IMAGE-MGC_LOAD
InterPro AH/BAR-dom UniProtKB/TrEMBL
  F_BAR UniProtKB/TrEMBL
  FCH UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
KEGG Report rno:311187 UniProtKB/TrEMBL
MGC_CLONE MGC:124517 IMAGE-MGC_LOAD
NCBI Gene 311187 ENTREZGENE
PANTHER PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  PTHR23065:SF18 UniProtKB/TrEMBL
Pfam FCH UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PhenoGen Pacsin3 PhenoGen
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE F_BAR UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014204 RatGTEx
SMART FCH UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP SH3 UniProtKB/TrEMBL
  SSF103657 UniProtKB/TrEMBL
UniProt A0A0G2JXX4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AS02_RAT UniProtKB/TrEMBL
  A0ABK0L9H0_RAT UniProtKB/TrEMBL
  A6HNC1 ENTREZGENE, UniProtKB/TrEMBL
  G3V9N7 ENTREZGENE, UniProtKB/TrEMBL
  Q5I2Z0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Pacsin3  protein kinase C and casein kinase substrate in neurons 3  Pacsin3_predicted  protein kinase C and casein kinase substrate in neurons 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Pacsin3_predicted  protein kinase C and casein kinase substrate in neurons 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED