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| # | Reference Title | Reference Citation |
| 1. | Mutations in mouse Ift144 model the craniofacial, limb and rib defects in skeletal ciliopathies. | Ashe A, etal., Hum Mol Genet. 2012 Apr 15;21(8):1808-23. doi: 10.1093/hmg/ddr613. Epub 2012 Jan 6. |
| 2. | Ciliopathies with skeletal anomalies and renal insufficiency due to mutations in the IFT-A gene WDR19. | Bredrup C, etal., Am J Hum Genet. 2011 Nov 11;89(5):634-43. doi: 10.1016/j.ajhg.2011.10.001. Epub 2011 Oct 20. |
| 3. | WDR19: an ancient, retrograde, intraflagellar ciliary protein is mutated in autosomal recessive retinitis pigmentosa and in Senior-Loken syndrome. | Coussa RG, etal., Clin Genet. 2013 Aug;84(2):150-9. doi: 10.1111/cge.12196. |
| 4. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 5. | Nephronophthisis 13: implications of its association with Caroli disease and altered intracellular localization of WDR19 in the kidney. | Lee JM, etal., Pediatr Nephrol. 2015 Sep;30(9):1451-8. doi: 10.1007/s00467-015-3068-8. Epub 2015 Mar 1. |
| 6. | OMIM Disease Annotation Pipeline | OMIM Disease Annotation Pipeline |
| 7. | Hepatorenal fibrocystic diseases in children. | Park E, etal., Pediatr Nephrol. 2016 Jan;31(1):113-9. doi: 10.1007/s00467-015-3185-4. Epub 2015 Aug 11. |
| 8. | GOA pipeline | RGD automated data pipeline |
| 9. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 10. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
| 11. | Comprehensive gene review and curation | RGD comprehensive gene curation |
| PMID:16957054 | PMID:19208653 | PMID:20889716 | PMID:22689656 | PMID:25224227 | PMID:27932497 |
| Wdr19 (Rattus norvegicus - Norway rat) |
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| WDR19 (Homo sapiens - human) |
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| Wdr19 (Mus musculus - house mouse) |
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| Wdr19 (Chinchilla lanigera - long-tailed chinchilla) |
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| WDR19 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| WDR19 (Canis lupus familiaris - dog) |
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| Wdr19 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| WDR19 (Sus scrofa - pig) |
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| WDR19 (Chlorocebus sabaeus - green monkey) |
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| Wdr19 (Heterocephalus glaber - naked mole-rat) |
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| Wdr19 (Rattus rattus - black rat) |
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.
Variants in Wdr19
530 total Variants
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| The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16 | 12 | 67 | 164 | 91 | 90 | 59 | 92 | 59 | 6 | 356 | 192 | 11 | 143 | 81 | 92 | 31 | 17 | 17 |
| RefSeq Transcripts | NM_001191679 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_039091922 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | CH473981 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| JAXUCZ010000014 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| Ensembl Acc Id: | ENSRNOT00000003991 ⟹ ENSRNOP00000003991 | ||||||||||||||||
| Type: | CODING | ||||||||||||||||
| Position: |
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| Ensembl Acc Id: | ENSRNOT00000094871 ⟹ ENSRNOP00000091353 | ||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_001191679 ⟹ NP_001178608 | ||||||||||||||||||||||||
| RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||
| Position: |
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| Sequence: |
| RefSeq Acc Id: | XM_039091922 ⟹ XP_038947850 | ||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Protein RefSeqs | NP_001178608 | (Get FASTA) | NCBI Sequence Viewer |
| XP_038947850 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | EDL90074 | (Get FASTA) | NCBI Sequence Viewer |
| EDL90075 | (Get FASTA) | NCBI Sequence Viewer | |
| Ensembl Protein | ENSRNOP00000003991 | ||
| ENSRNOP00000003991.5 |
| RefSeq Acc Id: | NP_001178608 ⟸ NM_001191679 |
| - UniProtKB: | F1LV01 (UniProtKB/TrEMBL), A0A8I6GJJ5 (UniProtKB/TrEMBL) |
| - Sequence: |
| Ensembl Acc Id: | ENSRNOP00000003991 ⟸ ENSRNOT00000003991 |
| RefSeq Acc Id: | XP_038947850 ⟸ XM_039091922 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | A0A8I6GJJ5 (UniProtKB/TrEMBL) |
| Ensembl Acc Id: | ENSRNOP00000091353 ⟸ ENSRNOT00000094871 |
| Name | Modeler | Protein Id | AA Range | Protein Structure |
| AF-F1LV01-F1-model_v2 | AlphaFold | F1LV01 | 1-1341 | view protein structure |
| eQTL | View at Phenogen | |
| WGCNA | View at Phenogen | |
| Tissue/Strain Expression | View at Phenogen |
| RGD ID: | 13699318 | ||||||||
| Promoter ID: | EPDNEW_R9843 | ||||||||
| Type: | multiple initiation site | ||||||||
| Name: | Wdr19_1 | ||||||||
| Description: | WD repeat domain 19 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1306997 | AgrOrtholog |
| BioCyc Gene | G2FUF-15737 | BioCyc |
| Ensembl Genes | ENSRNOG00000002932 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000003991 | ENTREZGENE |
| ENSRNOT00000003991.8 | UniProtKB/TrEMBL | |
| Gene3D-CATH | 1.25.40.470 | UniProtKB/TrEMBL |
| 2.130.10.10 | UniProtKB/TrEMBL | |
| InterPro | TPR-like_helical | UniProtKB/TrEMBL |
| TPR_IF140/IFT172/WDR19 | UniProtKB/TrEMBL | |
| WD40/YVTN_repeat-like_dom | UniProtKB/TrEMBL | |
| WD40_repeat | UniProtKB/TrEMBL | |
| WDR19/dyf-2 | UniProtKB/TrEMBL | |
| WDR19_WD40_rpt | UniProtKB/TrEMBL | |
| Znf_IFT121-like | UniProtKB/TrEMBL | |
| KEGG Report | rno:305349 | UniProtKB/TrEMBL |
| NCBI Gene | 305349 | ENTREZGENE |
| PANTHER | PTHR14920 | UniProtKB/TrEMBL |
| WD REPEAT-CONTAINING PROTEIN 19 | UniProtKB/TrEMBL | |
| Pfam | Beta-prop_WDR19_1st | UniProtKB/TrEMBL |
| TPR_IF140-IFT172 | UniProtKB/TrEMBL | |
| WD40_3 | UniProtKB/TrEMBL | |
| Zf_2nd_IFT121 | UniProtKB/TrEMBL | |
| Zf_IFT144_1st | UniProtKB/TrEMBL | |
| PhenoGen | Wdr19 | PhenoGen |
| RatGTEx | ENSRNOG00000002932 | RatGTEx |
| SMART | WD40 | UniProtKB/TrEMBL |
| Superfamily-SCOP | DPP6 N-terminal domain-like | UniProtKB/TrEMBL |
| SSF48452 | UniProtKB/TrEMBL | |
| Tricorn protease domain 2 | UniProtKB/TrEMBL | |
| UniProt | A0A8I6GJJ5 | ENTREZGENE |
| F1LV01 | ENTREZGENE, UniProtKB/TrEMBL |
| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2008-04-30 | Wdr19 | WD repeat domain 19 | Wdr19_predicted | WD repeat domain 19 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2006-03-30 | Wdr19_predicted | WD repeat domain 19 (predicted) | RGD1306997_predicted | similar to WD repeat membrane protein (predicted) | Symbol and Name updated | 1299863 | APPROVED |
| 2005-01-20 | RGD1306997_predicted | similar to WD repeat membrane protein (predicted) | LOC305349_predicted | Symbol and Name status set to approved | 1331353 | APPROVED | |
| 2005-01-12 | LOC305349_predicted | similar to WD repeat membrane protein (predicted) | Symbol and Name status set to provisional | 70820 | PROVISIONAL |