Rfc3 (replication factor C subunit 3) - Rat Genome Database

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Gene: Rfc3 (replication factor C subunit 3) Rattus norvegicus
Analyze
Symbol: Rfc3
Name: replication factor C subunit 3
RGD ID: 1306832
Description: Predicted to enable ATP-dependent activity, acting on DNA. Predicted to contribute to DNA binding activity; DNA clamp loader activity; and single-stranded DNA helicase activity. Predicted to be involved in DNA repair and DNA-templated DNA replication. Predicted to be located in chromosome. Predicted to be part of Ctf18 RFC-like complex and DNA replication factor C complex. Predicted to be active in nucleus. Orthologous to human RFC3 (replication factor C subunit 3); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; DNA replication pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC288414; MGC109141; replication factor C (activator 1) 3; replication factor C 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8125,836,546 - 5,847,331 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl125,836,553 - 5,847,340 (+)EnsemblGRCr8
mRatBN7.2121,000,987 - 1,011,778 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,000,994 - 1,011,778 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx121,587,274 - 1,598,028 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0122,109,524 - 2,120,278 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.012998,262 - 1,009,027 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0121,460,581 - 1,471,344 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl121,460,538 - 1,471,357 (+)Ensemblrn6Rnor6.0
Rnor_5.0121,439,571 - 1,450,360 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4123,224,493 - 3,235,256 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera122,702,117 - 2,712,874 (+)NCBICelera
RGSC_v3.1123,224,496 - 3,235,256 (-)NCBI
Cytogenetic Map12p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,2'-Methylenebis(4-methyl-6-tert-butylphenol)  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-diaminotoluene  (ISO)
2,4-dinitrotoluene  (EXP)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
7,9-dihydro-1H-purine-2,6,8(3H)-trione  (ISO)
acetamide  (EXP)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
carmustine  (EXP)
cefaloridine  (EXP)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (EXP)
genistein  (EXP)
gentamycin  (EXP)
glyphosate  (ISO)
GSK-J4  (ISO)
inulin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
Lasiocarpine  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
malathion  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methotrexate  (EXP)
methyl methanesulfonate  (ISO)
mitomycin C  (ISO)
monocrotaline  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel dichloride  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
riddelliine  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thalidomide  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
tioguanine  (EXP)
toluene 2,4-diisocyanate  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Replication clamps and clamp loaders. Hedglin M, etal., Cold Spring Harb Perspect Biol. 2013 Apr 1;5(4):a010165. doi: 10.1101/cshperspect.a010165.
4. Mechanisms and functions of DNA mismatch repair. Li GM Cell Res. 2008 Jan;18(1):85-98.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:9488738   PMID:12477932   PMID:12930902   PMID:16079077  


Genomics

Comparative Map Data
Rfc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8125,836,546 - 5,847,331 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl125,836,553 - 5,847,340 (+)EnsemblGRCr8
mRatBN7.2121,000,987 - 1,011,778 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,000,994 - 1,011,778 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx121,587,274 - 1,598,028 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0122,109,524 - 2,120,278 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.012998,262 - 1,009,027 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0121,460,581 - 1,471,344 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl121,460,538 - 1,471,357 (+)Ensemblrn6Rnor6.0
Rnor_5.0121,439,571 - 1,450,360 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4123,224,493 - 3,235,256 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera122,702,117 - 2,712,874 (+)NCBICelera
RGSC_v3.1123,224,496 - 3,235,256 (-)NCBI
Cytogenetic Map12p12NCBI
RFC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381333,818,149 - 33,977,377 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1333,818,069 - 33,966,558 (+)Ensemblhg38GRCh38
GRCh371334,392,286 - 34,540,695 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361333,290,206 - 33,438,695 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341333,290,233 - 33,438,695NCBI
Celera1315,458,790 - 15,607,255 (+)NCBICelera
Cytogenetic Map13q13.2NCBI
HuRef1315,203,964 - 15,352,421 (+)NCBIHuRef
CHM1_11334,360,142 - 34,508,658 (+)NCBICHM1_1
T2T-CHM13v2.01333,035,631 - 33,299,073 (+)NCBIT2T-CHM13v2.0
Rfc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395151,566,282 - 151,574,673 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5151,566,221 - 151,574,707 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385151,642,817 - 151,651,208 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5151,642,756 - 151,651,242 (-)Ensemblmm10GRCm38
MGSCv375152,445,399 - 152,453,783 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365151,911,135 - 151,921,447 (-)NCBIMGSCv36mm8
Celera5149,635,928 - 149,644,293 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map590.18NCBI
Rfc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543112,069,204 - 12,084,577 (-)Ensembl
ChiLan1.0NW_00495543112,071,465 - 12,084,570 (-)NCBIChiLan1.0ChiLan1.0
RFC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21433,380,789 - 33,593,692 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11324,486,971 - 24,699,524 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01315,073,464 - 15,220,646 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11333,503,992 - 33,650,610 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1333,503,439 - 33,523,403 (+)EnsemblpanPan2panpan1.1
RFC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1256,469,865 - 6,486,935 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl256,469,867 - 6,486,849 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha256,506,544 - 6,523,599 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0256,579,163 - 6,596,225 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl256,579,165 - 6,596,204 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,477,994 - 6,495,070 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0256,469,836 - 6,486,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0256,533,902 - 6,550,961 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rfc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945167,656,806 - 167,706,385 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647228,278,069 - 28,299,226 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647228,274,997 - 28,295,349 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RFC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1110,146,531 - 10,165,172 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11110,145,927 - 10,524,472 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21110,050,340 - 10,086,667 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RFC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1312,525,512 - 12,545,046 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl312,525,544 - 12,545,134 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605731,618,168 - 31,819,439 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rfc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247763,818,351 - 3,839,035 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247763,738,521 - 3,839,056 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rfc3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1161,021,495 - 1,032,153 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rfc3
61 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:93
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000001444
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12115486827Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1357337Gluco3Glucose level QTL 30.0004adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)12116966671Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
61334Gluco17Glucose level QTL 176.3adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)12116966671Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12111869600Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001444   ⟹   ENSRNOP00000001444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl125,836,553 - 5,847,340 (+)Ensembl
mRatBN7.2 Ensembl121,000,994 - 1,011,778 (+)Ensembl
Rnor_6.0 Ensembl121,460,538 - 1,471,357 (+)Ensembl
RefSeq Acc Id: NM_001009629   ⟹   NP_001009629
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8125,836,568 - 5,847,331 (+)NCBI
mRatBN7.2121,001,015 - 1,011,778 (+)NCBI
Rnor_6.0121,460,581 - 1,471,344 (+)NCBI
Rnor_5.0121,439,571 - 1,450,360 (+)NCBI
RGSC_v3.4123,224,493 - 3,235,256 (-)RGD
Celera122,702,117 - 2,712,874 (+)RGD
Sequence:
RefSeq Acc Id: XM_039089148   ⟹   XP_038945076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8125,836,546 - 5,847,309 (+)NCBI
mRatBN7.2121,000,987 - 1,011,778 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001009629 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945076 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88281 (Get FASTA)   NCBI Sequence Viewer  
  EDL74921 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000001444
  ENSRNOP00000001444.4
RefSeq Acc Id: NP_001009629   ⟸   NM_001009629
- UniProtKB: Q5M830 (UniProtKB/TrEMBL),   F7F7G0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001444   ⟸   ENSRNOT00000001444
RefSeq Acc Id: XP_038945076   ⟸   XM_039089148
- Peptide Label: isoform X1
Protein Domains
AAA+ ATPase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M830-F1-model_v2 AlphaFold Q5M830 1-356 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698362
Promoter ID:EPDNEW_R8887
Type:initiation region
Name:Rfc3_1
Description:replication factor C subunit 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0121,460,606 - 1,460,666EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306832 AgrOrtholog
BioCyc Gene G2FUF-20495 BioCyc
Ensembl Genes ENSRNOG00000001088 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001444 ENTREZGENE
  ENSRNOT00000001444.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.60 UniProtKB/TrEMBL
  1.20.272.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7383278 IMAGE-MGC_LOAD
InterPro ATPase_AAA+_core UniProtKB/TrEMBL
  DNA_pol3_clamp-load_cplx_C UniProtKB/TrEMBL
  DNA_Rep/Repair_Clamp_Loader UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:288414 UniProtKB/TrEMBL
MGC_CLONE MGC:109141 IMAGE-MGC_LOAD
NCBI Gene 288414 ENTREZGENE
PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT UniProtKB/TrEMBL
  REPLICATION FACTOR C SUBUNIT 3 UniProtKB/TrEMBL
Pfam DNA_pol3_delta2 UniProtKB/TrEMBL
  RCF1-5-like_lid UniProtKB/TrEMBL
  RFC_C UniProtKB/TrEMBL
PhenoGen Rfc3 PhenoGen
RatGTEx ENSRNOG00000001088 RatGTEx
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP Pol_clamp_load_C UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt F7F7G0 ENTREZGENE, UniProtKB/TrEMBL
  Q5M830 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Rfc3  replication factor C subunit 3  Rfc3  replication factor C (activator 1) 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Rfc3  replication factor C (activator 1) 3  Rfc3_predicted  replication factor C (activator 1) 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rfc3_predicted  replication factor C (activator 1) 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED