Psmd11 (proteasome 26S subunit, non-ATPase 11) - Rat Genome Database

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Gene: Psmd11 (proteasome 26S subunit, non-ATPase 11) Rattus norvegicus
Analyze
Symbol: Psmd11
Name: proteasome 26S subunit, non-ATPase 11
RGD ID: 1306450
Description: Predicted to enable structural molecule activity. Predicted to be involved in proteasome assembly; stem cell differentiation; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD11 (proteasome 26S subunit, non-ATPase 11); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 26S proteasome non-ATPase regulatory subunit 11; 26S proteasome regulatory subunit RPN6; LOC303353; proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81065,923,669 - 65,977,523 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1065,931,279 - 65,976,234 (+)EnsemblGRCr8
mRatBN7.21065,433,853 - 65,479,774 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1065,433,853 - 65,479,766 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1070,061,973 - 70,106,425 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01069,567,286 - 69,611,745 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01065,029,041 - 65,073,423 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01067,810,655 - 67,857,562 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1067,810,655 - 67,857,223 (+)Ensemblrn6Rnor6.0
Rnor_5.01067,465,213 - 67,511,247 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41068,664,950 - 68,710,616 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1064,392,663 - 64,437,757 (+)NCBICelera
RGSC_v3.11068,679,156 - 68,723,345 (+)NCBI
Cytogenetic Map10q26NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
(Z)-3-butylidenephthalide  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (ISO)
1H-pyrazole  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-butoxyethanol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amiodarone  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
cobalt dichloride  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dimethylarsinous acid  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glyphosate  (ISO)
hypochlorous acid  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mechlorethamine  (ISO)
Mesaconitine  (EXP)
methapyrilene  (EXP)
methylmercury chloride  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nefazodone  (EXP)
nickel subsulfide  (EXP)
nobiletin  (ISO)
ochratoxin A  (EXP,ISO)
omega-6 fatty acid  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
triadimefon  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
tunicamycin  (ISO)
valdecoxib  (EXP)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses. Sun C, etal., Science. 2023 May 26;380(6647):eadf2018. doi: 10.1126/science.adf2018. Epub 2023 May 26.
Additional References at PubMed
PMID:12477932   PMID:16857966   PMID:17323924   PMID:19946888   PMID:20498273   PMID:21630459   PMID:21949367   PMID:22972301   PMID:23376485   PMID:31904090  


Genomics

Comparative Map Data
Psmd11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81065,923,669 - 65,977,523 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1065,931,279 - 65,976,234 (+)EnsemblGRCr8
mRatBN7.21065,433,853 - 65,479,774 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1065,433,853 - 65,479,766 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1070,061,973 - 70,106,425 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01069,567,286 - 69,611,745 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01065,029,041 - 65,073,423 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01067,810,655 - 67,857,562 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1067,810,655 - 67,857,223 (+)Ensemblrn6Rnor6.0
Rnor_5.01067,465,213 - 67,511,247 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41068,664,950 - 68,710,616 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1064,392,663 - 64,437,757 (+)NCBICelera
RGSC_v3.11068,679,156 - 68,723,345 (+)NCBI
Cytogenetic Map10q26NCBI
PSMD11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381732,444,510 - 32,483,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1732,444,379 - 32,483,319 (+)Ensemblhg38GRCh38
GRCh371730,771,528 - 30,810,337 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361727,795,615 - 27,832,155 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341727,795,614 - 27,832,154NCBI
Celera1727,681,703 - 27,718,244 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1726,958,102 - 26,996,871 (+)NCBIHuRef
CHM1_11730,833,949 - 30,872,799 (+)NCBICHM1_1
T2T-CHM13v2.01733,390,282 - 33,429,086 (+)NCBIT2T-CHM13v2.0
Psmd11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,319,441 - 80,364,074 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,319,441 - 80,364,074 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381180,428,615 - 80,473,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,428,615 - 80,473,248 (+)Ensemblmm10GRCm38
MGSCv371180,242,117 - 80,285,635 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361180,244,823 - 80,288,160 (+)NCBIMGSCv36mm8
Celera1190,066,404 - 90,109,923 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.89NCBI
Psmd11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554817,364,543 - 7,405,504 (+)Ensembl
ChiLan1.0NW_0049554817,364,543 - 7,402,770 (+)NCBIChiLan1.0ChiLan1.0
PSMD11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21931,976,086 - 32,013,242 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11733,856,001 - 33,893,083 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01724,292,990 - 24,331,690 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11724,583,382 - 24,621,458 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1724,585,755 - 24,621,013 (-)EnsemblpanPan2panpan1.1
PSMD11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1940,507,227 - 40,538,967 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl940,508,541 - 40,538,566 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha939,666,114 - 39,697,870 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0941,323,304 - 41,355,110 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl941,324,628 - 41,354,721 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1940,109,437 - 40,141,191 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0940,403,654 - 40,435,435 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0940,478,360 - 40,510,143 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Psmd11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560239,541,633 - 39,591,809 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365382,418,454 - 2,456,411 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365382,420,618 - 2,456,163 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMD11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1242,498,941 - 42,529,805 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11242,498,711 - 42,529,853 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21244,257,980 - 44,287,869 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PSMD11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11625,999,575 - 26,040,033 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1625,999,569 - 26,042,793 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660754,002,452 - 4,045,543 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmd11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624875495,263 - 534,433 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624875495,353 - 534,433 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Psmd11
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1989,941,889 - 89,986,053 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Psmd11
475 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:249
Count of miRNA genes:144
Interacting mature miRNAs:185
Transcripts:ENSRNOT00000064285
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105107189796071897Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103621155669161158Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103179628176796281Rat
152025227Bw195Body weight QTL 1955.73body mass (VT:0001259)104748901769161158Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102702353598502431Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)102744378772443787Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105216243375582749Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)103550938391417879Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)105686844076129113Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)102744378772443787Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1058073360103073360Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105429633699451733Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104183127886831278Rat
1579919Bp281Blood pressure QTL 2810.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105046480295464802Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104493935989939359Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104552916496099749Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
10450493Bp382Blood pressure QTL 3820.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105086028895860288Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102895035373950353Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102744378772443787Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14282327487823274Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104493935989939359Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)102744378772443787Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104282327487823274Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106184349698710773Rat
2306787Ean3Experimental allergic neuritis QTL 33.1nervous system integrity trait (VT:0010566)body weight loss (CMO:0001399)105429622767476781Rat
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102293137391127454Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2306792Ean4Experimental allergic neuritis QTL 44nervous system integrity trait (VT:0010566)IFNG-secreting splenocyte count (CMO:0002122)104949549294495492Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101553301273695498Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)102466212373695339Rat
2298481Eau9Experimental allergic uveoretinitis QTL 90.0169uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)106413959783061459Rat
2298480Eau7Experimental allergic uveoretinitis QTL 70.0049uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103550938380509383Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106184363383061236Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)102980091091417879Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)102758722696099902Rat
2289985Bp305Blood pressure QTL 305arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102907697874076978Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105530797293608131Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)1061843496100198886Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104360879388608793Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)102744378772443787Rat
1331839Eae18bExperimental allergic encephalomyelitis QTL 18b5.80.03nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)106174653268282731Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104994371094943710Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103112911376129113Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104493935989939359Rat
631526Bp76Blood pressure QTL 760.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106184363367241334Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1061843496100198886Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104786912992869129Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
12880050Am10Aortic mass QTL 100.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)103950348784503487Rat
2292436Bp310Blood pressure QTL 310arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105060467795604677Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)103550938388177745Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102702353599451848Rat

Markers in Region
RH129528  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21065,479,490 - 65,479,709 (+)MAPPERmRatBN7.2
Rnor_6.01067,857,279 - 67,857,497NCBIRnor6.0
Rnor_5.01067,510,964 - 67,511,182UniSTSRnor5.0
RGSC_v3.41068,710,672 - 68,710,890UniSTSRGSC3.4
Celera1064,437,813 - 64,438,031UniSTS
Cytogenetic Map10q26UniSTS
AW527866  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21065,434,159 - 65,434,581 (+)MAPPERmRatBN7.2
Rnor_6.01067,810,962 - 67,811,383NCBIRnor6.0
Rnor_5.01067,465,520 - 67,465,941UniSTSRnor5.0
RGSC_v3.41068,665,257 - 68,665,678UniSTSRGSC3.4
Celera1064,392,970 - 64,393,391UniSTS
Cytogenetic Map10q26UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
23 13 82 212 91 90 59 146 59 6 476 271 22 190 115 120 31 34 34

Sequence


Ensembl Acc Id: ENSRNOT00000064285   ⟹   ENSRNOP00000062146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1065,932,353 - 65,976,234 (+)Ensembl
mRatBN7.2 Ensembl1065,433,853 - 65,479,435 (+)Ensembl
Rnor_6.0 Ensembl1067,810,655 - 67,857,223 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079156   ⟹   ENSRNOP00000070048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1065,931,279 - 65,976,234 (+)Ensembl
mRatBN7.2 Ensembl1065,433,853 - 65,478,512 (+)Ensembl
Rnor_6.0 Ensembl1067,810,810 - 67,856,328 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108471   ⟹   ENSRNOP00000083971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1065,931,279 - 65,976,234 (+)Ensembl
mRatBN7.2 Ensembl1065,433,853 - 65,479,766 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118460   ⟹   ENSRNOP00000097793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1065,932,343 - 65,976,234 (+)Ensembl
mRatBN7.2 Ensembl1065,434,590 - 65,479,766 (+)Ensembl
RefSeq Acc Id: NM_001394006   ⟹   NP_001380935
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81065,932,343 - 65,976,242 (+)NCBI
mRatBN7.21065,434,587 - 65,478,493 (+)NCBI
RefSeq Acc Id: NR_172065
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81065,931,609 - 65,976,242 (+)NCBI
mRatBN7.21065,433,853 - 65,478,493 (+)NCBI
RefSeq Acc Id: XM_006246987   ⟹   XP_006247049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81065,931,619 - 65,977,523 (+)NCBI
mRatBN7.21065,434,059 - 65,479,774 (+)NCBI
Rnor_6.01067,810,665 - 67,857,562 (+)NCBI
Rnor_5.01067,465,213 - 67,511,247 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006246988   ⟹   XP_006247050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81065,923,669 - 65,977,523 (+)NCBI
mRatBN7.21065,434,059 - 65,479,774 (+)NCBI
Rnor_6.01067,810,665 - 67,857,562 (+)NCBI
Rnor_5.01067,465,213 - 67,511,247 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063269077   ⟹   XP_063125147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81065,923,669 - 65,977,523 (+)NCBI
RefSeq Acc Id: XM_063269078   ⟹   XP_063125148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81065,932,331 - 65,977,523 (+)NCBI
RefSeq Acc Id: XP_006247049   ⟸   XM_006246987
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JWX1 (UniProtKB/TrEMBL),   A6HHB7 (UniProtKB/TrEMBL),   A0A8I5ZWU3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247050   ⟸   XM_006246988
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JWX1 (UniProtKB/TrEMBL),   A6HHB7 (UniProtKB/TrEMBL),   A0A8I5ZWU3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070048   ⟸   ENSRNOT00000079156
Ensembl Acc Id: ENSRNOP00000062146   ⟸   ENSRNOT00000064285
Ensembl Acc Id: ENSRNOP00000097793   ⟸   ENSRNOT00000118460
Ensembl Acc Id: ENSRNOP00000083971   ⟸   ENSRNOT00000108471
RefSeq Acc Id: NP_001380935   ⟸   NM_001394006
- UniProtKB: F1LMZ8 (UniProtKB/Swiss-Prot),   B5DEP6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125147   ⟸   XM_063269077
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JWX1 (UniProtKB/TrEMBL),   A6HHB7 (UniProtKB/TrEMBL),   A0A8I5ZWU3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125148   ⟸   XM_063269078
- Peptide Label: isoform X2
Protein Domains
PCI

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LMZ8-F1-model_v2 AlphaFold F1LMZ8 1-422 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306450 AgrOrtholog
BioCyc Gene G2FUF-23967 BioCyc
Ensembl Genes ENSRNOG00000005538 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000064285 ENTREZGENE
  ENSRNOT00000079156 ENTREZGENE
Gene3D-CATH 1.25.40.570 UniProtKB/Swiss-Prot
InterPro 26S_Proteasome/COP9_Components UniProtKB/Swiss-Prot
  PCI_dom UniProtKB/Swiss-Prot
  Rpn6_C_helix UniProtKB/Swiss-Prot
  Rpn6_N UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
  WH_DNA-bd_sf UniProtKB/Swiss-Prot
NCBI Gene 303353 ENTREZGENE
PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 UniProtKB/Swiss-Prot
Pfam PCI UniProtKB/Swiss-Prot
  RPN6_C_helix UniProtKB/Swiss-Prot
  RPN6_N UniProtKB/Swiss-Prot
PhenoGen Psmd11 PhenoGen
PROSITE PCI UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000005538 RatGTEx
SMART PAM UniProtKB/Swiss-Prot
  PINT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot
  SSF48452 UniProtKB/Swiss-Prot
UniProt A0A0G2JWX1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWU3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AVH3_RAT UniProtKB/TrEMBL
  A6HHB7 ENTREZGENE, UniProtKB/TrEMBL
  B5DEP6 ENTREZGENE, UniProtKB/TrEMBL
  D3Z950_RAT UniProtKB/TrEMBL
  F1LMZ8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-19 Psmd11  proteasome 26S subunit, non-ATPase 11  Psmd11  proteasome (prosome, macropain) 26S subunit, non-ATPase, 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Psmd11  proteasome (prosome, macropain) 26S subunit, non-ATPase, 11   Psmd11_predicted  proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Psmd11_predicted  proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 (predicted)      Symbol and Name status set to approved 70820 APPROVED