PSMD11 (proteasome 26S subunit, non-ATPase 11) - Rat Genome Database

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Gene: PSMD11 (proteasome 26S subunit, non-ATPase 11) Chlorocebus sabaeus
Analyze
Symbol: PSMD11
Name: proteasome 26S subunit, non-ATPase 11
RGD ID: 18657250
Description: ENCODES a protein that exhibits structural molecule activity (inferred); INVOLVED IN proteasome assembly (ortholog); stem cell differentiation (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); genetic disease (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome regulatory particle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 26S proteasome non-ATPase regulatory subunit 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11625,999,575 - 26,040,033 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1625,999,569 - 26,042,793 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660754,002,452 - 4,045,543 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PSMD11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11625,999,575 - 26,040,033 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1625,999,569 - 26,042,793 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660754,002,452 - 4,045,543 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PSMD11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381732,444,510 - 32,483,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1732,444,379 - 32,483,319 (+)EnsemblGRCh38hg38GRCh38
GRCh371730,771,528 - 30,810,337 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361727,795,615 - 27,832,155 (+)NCBINCBI36Build 36hg18NCBI36
Build 341727,795,614 - 27,832,154NCBI
Celera1727,681,703 - 27,718,244 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1726,958,102 - 26,996,871 (+)NCBIHuRef
CHM1_11730,833,949 - 30,872,799 (+)NCBICHM1_1
T2T-CHM13v2.01733,390,282 - 33,429,086 (+)NCBIT2T-CHM13v2.0
Psmd11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,319,441 - 80,364,074 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,319,441 - 80,364,074 (+)EnsemblGRCm39 Ensembl
GRCm381180,428,615 - 80,473,248 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,428,615 - 80,473,248 (+)EnsemblGRCm38mm10GRCm38
MGSCv371180,242,117 - 80,285,635 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361180,244,823 - 80,288,160 (+)NCBIMGSCv36mm8
Celera1190,066,404 - 90,109,923 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1147.89NCBI
Psmd11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81065,923,669 - 65,977,523 (+)NCBIGRCr8
mRatBN7.21065,433,853 - 65,479,774 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1065,433,853 - 65,479,766 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1070,061,973 - 70,106,425 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01069,567,286 - 69,611,745 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01065,029,041 - 65,073,423 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01067,810,655 - 67,857,562 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1067,810,655 - 67,857,223 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01067,465,213 - 67,511,247 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41068,664,950 - 68,710,616 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11068,679,156 - 68,723,345 (+)NCBI
Celera1064,392,663 - 64,437,757 (+)NCBICelera
Cytogenetic Map10q26NCBI
Psmd11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554817,364,543 - 7,405,504 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554817,364,543 - 7,402,770 (+)NCBIChiLan1.0ChiLan1.0
PSMD11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21931,976,086 - 32,013,242 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11733,856,001 - 33,893,083 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01724,292,990 - 24,331,690 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11724,583,382 - 24,621,458 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1724,585,755 - 24,621,013 (-)Ensemblpanpan1.1panPan2
PSMD11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1940,507,227 - 40,538,967 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl940,508,541 - 40,538,566 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha939,666,114 - 39,697,870 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0941,323,304 - 41,355,110 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl941,324,628 - 41,354,721 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1940,109,437 - 40,141,191 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0940,403,654 - 40,435,435 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0940,478,360 - 40,510,143 (-)NCBIUU_Cfam_GSD_1.0
Psmd11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560239,541,633 - 39,591,809 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365382,418,454 - 2,456,411 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365382,420,618 - 2,456,163 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMD11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1242,498,941 - 42,529,805 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11242,498,711 - 42,529,853 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21244,257,980 - 44,287,869 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Psmd11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624875495,263 - 534,433 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624875495,353 - 534,433 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 51
Low 20 9
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008010993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000004414   ⟹   ENSCSAP00000002666
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1625,999,569 - 26,042,793 (+)Ensembl
RefSeq Acc Id: XM_008010993   ⟹   XP_008009184
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11625,999,575 - 26,040,033 (+)NCBI
Vero_WHO_p1.0NW_0236660754,002,452 - 4,045,543 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008009184 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002666
  ENSCSAP00000002666.1
Reference Protein Sequences
RefSeq Acc Id: XP_008009184   ⟸   XM_008010993
- UniProtKB: A0A0D9R227 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000002666   ⟸   ENSCSAT00000004414


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006373 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004414.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.570 UniProtKB/TrEMBL
InterPro PCI_dom UniProtKB/TrEMBL
  Rpn6_C_helix UniProtKB/TrEMBL
  Rpn6_N UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report csab:103242697 UniProtKB/TrEMBL
NCBI Gene PSMD11 ENTREZGENE
PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11 UniProtKB/TrEMBL
  26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 UniProtKB/TrEMBL
Pfam PCI UniProtKB/TrEMBL
  RPN6_C_helix UniProtKB/TrEMBL
  RPN6_N UniProtKB/TrEMBL
PROSITE PCI UniProtKB/TrEMBL
SMART PAM UniProtKB/TrEMBL
  PINT UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0A0D9R227 ENTREZGENE, UniProtKB/TrEMBL