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Gene: Uvssa (UV-stimulated scaffold protein A) Rattus norvegicus

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Symbol:

Uvssa

Name:

UV-stimulated scaffold protein A

RGD ID:

1306371

Description:

Predicted to enable RNA polymerase II complex binding activity; RNA polymerase inhibitor activity; and chromatin-protein adaptor activity. Predicted to be involved in protein ubiquitination; response to UV; and transcription-coupled nucleotide-excision repair. Predicted to be active in nucleus and site of DNA damage. Human ortholog(s) of this gene implicated in UV-sensitive syndrome. Orthologous to human UVSSA (UV stimulated scaffold protein A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC314061; LOC100912062; LOC314061; RGD1306371; similar to putative nuclear protein, with 2 coiled coil-4 domains, of eukaryotic origin (5I282); uncharacterized LOC100912062; uncharacterized protein LOC314061; UV-stimulated scaffold protein A-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UVSSA (UV stimulated scaffold protein A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Uvssa (UV stimulated scaffold protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Uvssa (UV stimulated scaffold protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UVSSA (UV stimulated scaffold protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UVSSA (UV stimulated scaffold protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Uvssa (UV stimulated scaffold protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UVSSA (UV stimulated scaffold protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UVSSA (UV stimulated scaffold protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Uvssa (UV stimulated scaffold protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Uvssa (UV stimulated scaffold protein A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Uvssa (UV stimulated scaffold protein A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	UVSSA (UV stimulated scaffold protein A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	uvssa (UV-stimulated scaffold protein A)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	uvs-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	uvs-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	uvssa	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	81,535,179 - 81,576,444 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	81,539,607 - 81,576,427 (-)	Ensembl				GRCr8
mRatBN7.2	14	77,309,188 - 77,351,922 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	77,314,056 - 77,351,903 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	81,767,777 - 81,803,602 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	83,008,324 - 83,044,153 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	79,453,658 - 79,489,481 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	82,621,028 - 82,658,912 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	82,623,050 - 82,658,891 (-)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	14	80,605,796 - 80,625,363 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	83,306,349 - 83,344,222 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	83,163,555 - 83,199,401 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	76,235,354 - 76,271,195 (-)	NCBI		Celera
RGSC_v3.1	14	83,172,596 - 83,201,792 (+)	NCBI
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

UV-sensitive syndrome (ISO)

UV-Sensitive Syndrome 3 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-palmitoylglycerol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

FR900359 (ISO)

methapyrilene (ISO)

methimazole (EXP)

methotrexate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

propiconazole (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

DNA damage response (IEA)

DNA repair (IEA)

protein ubiquitination (ISO,ISS)

response to UV (IBA,IEA,ISO,ISS)

transcription-coupled nucleotide-excision repair (IBA,ISO,ISS)

Cellular Component

chromosome (IBA,IEA,ISO,ISS)

nucleoplasm (ISO)

nucleus (ISO,ISS)

site of DNA damage (ISO,ISS)

Molecular Function

chromatin-protein adaptor activity (ISO,ISS)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II complex binding (IBA,ISO,ISS)

RNA polymerase inhibitor activity (ISO,ISS)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22466610	PMID:22466611	PMID:22466612

Genomics

Comparative Map Data

Uvssa
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	81,535,179 - 81,576,444 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	81,539,607 - 81,576,427 (-)	Ensembl				GRCr8
mRatBN7.2	14	77,309,188 - 77,351,922 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	77,314,056 - 77,351,903 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	81,767,777 - 81,803,602 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	83,008,324 - 83,044,153 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	79,453,658 - 79,489,481 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	82,621,028 - 82,658,912 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	82,623,050 - 82,658,891 (-)	Ensembl			rn6	Rnor6.0
Rnor_6.0 Ensembl	14	80,605,796 - 80,625,363 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	83,306,349 - 83,344,222 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	83,163,555 - 83,199,401 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	76,235,354 - 76,271,195 (-)	NCBI		Celera
RGSC_v3.1	14	83,172,596 - 83,201,792 (+)	NCBI
Cytogenetic Map	14	q21	NCBI

UVSSA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	1,342,011 - 1,395,989 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	1,345,691 - 1,395,989 (+)	Ensembl			hg38	GRCh38
GRCh37	4	1,340,996 - 1,381,837 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	1,331,104 - 1,371,732 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Cytogenetic Map	4	p16.3	NCBI
HuRef	4	1,308,628 - 1,349,495 (+)	NCBI		HuRef
CHM1_1	4	1,340,917 - 1,381,652 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	1,340,627 - 1,394,173 (+)	NCBI		T2T-CHM13v2.0

Uvssa
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	33,535,868 - 33,578,243 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	33,535,893 - 33,577,098 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	33,378,523 - 33,420,899 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	33,378,549 - 33,419,754 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	33,721,345 - 33,762,403 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	33,695,553 - 33,739,362 (+)	NCBI		MGSCv36	mm8
Celera	5	30,857,971 - 30,898,922 (+)	NCBI		Celera
Cytogenetic Map	5	B1	NCBI
cM Map	5	17.6	NCBI

Uvssa
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	728,522 - 756,348 (+)	Ensembl
ChiLan1.0	NW_004955514	725,257 - 754,274 (+)	NCBI	ChiLan1.0	ChiLan1.0

UVSSA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	1,675,775 - 1,730,773 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	1,647,029 - 1,697,904 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	1,492,716 - 1,532,114 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	1,373,342 - 1,414,370 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	1,373,562 - 1,413,982 (+)	Ensembl			panPan2	panpan1.1

UVSSA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	62,647,992 - 62,674,830 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	62,649,207 - 62,674,884 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	65,164,269 - 65,191,104 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	63,123,038 - 63,149,871 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	63,122,139 - 63,149,785 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	62,615,036 - 62,641,849 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	62,818,473 - 62,845,272 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	63,177,842 - 63,204,679 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Uvssa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	68,216,400 - 68,250,638 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	21,918,062 - 21,950,904 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	21,918,091 - 21,950,895 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UVSSA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	573,426 - 601,944 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	573,299 - 602,617 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

UVSSA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	47,378,310 - 47,418,861 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	47,378,770 - 47,417,559 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666051	3,676,911 - 3,758,293 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Uvssa
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	25,903,377 - 25,930,043 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624755	25,904,273 - 25,930,564 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Uvssa
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	71,434,639 - 71,471,295 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Uvssa
383 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	118
Count of miRNA genes:	105
Interacting mature miRNAs:	108
Transcripts:	ENSRNOT00000006841
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	38023710	83023710	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	59848686	104848686	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	77640071	96755654	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	77914838	104348525	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39009444	84009444	Rat
70153	Bp59	Blood pressure QTL 59	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	14	72970210	87582095	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30674469	85041098	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	33424686	102238540	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	74255551	109089856	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	77640071	96755654	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	38023710	83023710	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	62398852	107398852	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	77640071	100078267	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	60854936	105854936	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	74255551	109089856	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	100078267	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	77640071	96755654	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	59848686	104848686	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	77640071	96755654	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	38023710	83023710	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42616258	99224555	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	65920283	99224555	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39411170	87582095	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	38023710	83023710	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273305	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006841 ⟹ ENSRNOP00000006841

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	81,539,607 - 81,575,816 (-)	Ensembl
mRatBN7.2 Ensembl	14	77,314,056 - 77,351,903 (-)	Ensembl
Rnor_6.0 Ensembl	14	82,623,050 - 82,658,891 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	14	80,605,796 - 80,625,363 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000151963 ⟹ ENSRNOP00000099106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	81,540,162 - 81,576,427 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161304 ⟹ ENSRNOP00000112232

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	81,539,607 - 81,575,530 (-)	Ensembl

RefSeq Acc Id:

NM_001134558 ⟹ NP_001128030

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,540,586 - 81,576,427 (-)	NCBI
mRatBN7.2	14	77,316,060 - 77,351,903 (-)	NCBI
Rnor_6.0	14	82,623,050 - 82,658,891 (-)	NCBI
Rnor_5.0	14	83,306,349 - 83,344,222 (-)	NCBI
RGSC_v3.4	14	83,163,555 - 83,199,401 (+)	RGD
Celera	14	76,235,354 - 76,271,195 (-)	RGD

Sequence:

show sequence

CGTGGAGCCACCCGGGCAAATGCGGGAGACTGGTGGTGGCCTAATCTGAAAGGACCAGAGCGGG
CGCGCCGCGGTAACTTCCGCTCCTGCGCCGCGGGTCTTCTGGAGTTTGTGCCCGCCGCTCCCTG
GGGCCTGTAACAGAGCGCTGCCTACACCGGAAGGGGTGGGTGAGACAAGAGGCTGCATCCGGTG
GTCCGTGTCACCGGAACAGCGGAACGCTGGTACTGTCTCCTGAAGCGGAGGGTCAGGCAGCGAT
TGCGGCGGACTGAAGGGTCGTGGCCGGTCAGATTCTCGGCCCGCAGGGTCGGATCGGTCGCCCC
CGCAGTTATCTAGAGACTGTCGCTTGCAGAGAGAGAGTATCCTGTGCGACCAGTTGGAGTAAAA
TTTAGTGACATTTCCCCTTAACCGCGGCAGCGTCACCCACACAGCTGACCTAAGACTGCTGGAA
TATGGATCAGAAACTTTCACAGTTGATAGAGGAGCTCACAACTTCAGGAGAATCCCAACTGAAT
GCTCAGAAAATGAAGGAACTGAAGAAAATTTGCAAGTCTTCAGAGGAGCAGCTGAGCCATGCCT
ACCGCCTGCTAATGACACAGCTGACCCAGGACCACGCTGAGATCCGCCTCTCAGCCTTCCAGAT
CGTGGATGAGCTCTTCACCCGGTCCCATCAGTTCAGAGTGCTGCTTGTTTCTGACTTCCAGGAA
TTCCTGGAGCTCACACTGGGCACAGACAATGACCATCCCTTGCCACCCCCTCGGGAGGCAGCTC
AGAGGCTAAGGCAGGCAGCCATGCAAGCTGTGGAAGGTTGGAATGAGAAGTTTGGGGAAGCCTA
TAAGAAGCTAGCCTTGGGCTACCACTTCCTAAAACACACCAAAAAGGTGGATTTTCGGGATATA
AATGTTAGGACTCTGGCAGAAAGGAAGCGAGAAGAGGAGAAGCAGAAGCACTTGGATAAGATCC
ACAGAGAAAGTGCTGACCGGGCTAAGAGGGAGATGGAAGAAATGTCTGATGAAATTGGATGCTG
CCTGACAGAAGTGGAGAACTGCTTTAGGCTGCTGGTGCCCTTGGATTTGGGCCCGTACCGAGAG
GATAAGTTCTTTGGTGAGGCATCTGGCATAGCAGAGGACCATGCTCCTTGCGCCTGGAGCCCAG
ACCTGGCAACTCCCCGAGGGTCTGGTCTCTCTGGACCCCAGGATGAAGAGCAGCCATGCTGTAG
CAAGGACCTGGTTGCCTCTGCACACCATGCAGGATCTGCAGTTGGTCTGAAGGCACCAGCCCCA
GCAGCCACGGAAGACCCCTGCAGGGATGAAGACAGACACAGCGAACACAGCGACCCAGAGGATT
TCCTGCGGAGCCATGGGCTGGGCTCCCACAAGTACACGCTGGACGTGGAACTCCCCTCAGACGG
TCTGAAGGTACAGGAGAATGAAGACAACCTGGCCGTGCTCCACGCTGCTCGAGACTCGCTCAAA
CTCATCCAGAACAAGTTTCTGCCAGCGGTGTGCTCCTGGGTCCAGCGGTTTACCCGTGCAGGGA
TCTACAGTGGACATTTAAAGCAGGCCATTGACCTGAAAATGGAACTGGAACTTGCTCTGAAGAA
ATATGAAGAACTGAACATTGAGCCTGGGAGAGGACAAAGGAGCAGGACAGAAGCACTGGAGGAC
AGTGAGGAGGAGGACCAGGACTTCGTGGAGGTTCCAGAGAAAGAGGGTTACGAGCCTCGAATCC
CCGACCATCTACGAGCTGAATATGGGCTGGAGCCAAAGGCCCCACTGAAGACTCTGGAGAAACA
TACAGCTGTATGTAGCGTACAGGAGAGGACCAGGAGGAGAAGGGAAGAGGAGGCCTCAGACCCC
ACCTCTGCAGCTGCCCAGATGTTGCGGCTCCAGGACTGCTTGTCATCTCCCTCCTCCTCCTCTA
CCAGGGGACCTCTGGGACCAGAAGAAGCCCAGAAGCAAGCGGAGCGAGCCCGAGCACCCATGGT
GCCCTTCGGAGTGGACCTGTGCTACTGGGGCCAGGAGCAGCTAACAGCTGGGAAGATTCTTAAA
TCCGACTCTCAACACCGCTTCTGGAAACCCCACGAGGTAGAGGAAGAGGTGGACAGTGCCCATG
TTTCTGAGATGCTCCACAGCCGACACATTACCTTTTCTGGGAAATTCGAGCCTGTGCAGCACAA
GTGCCGGGCCCTCAGGCCTAATGGCAGGCTCTGCGAGCGCCAGGATCGGCTGAAGTGCCCGTTC
CATGGGAAGATCATCCCCAGAGATGACAAGGGGCAGCCTCTCAACCCTGAAGACAGAGCCCGTG
AACAGAGGCAGCAGCTTCAGCAGCAACGGGCACATCCAGATTGGCAGGACCCTGAGTTTATGAA
GGACGTGGAGGCAGCCACAGGGGTGGACCTCGGTTCCTCCAAGTATAGCAAGAAGGGCAAAGGG
AAAAAGAAGAAGCACCCCAACCTCACTGACCTTCGAGAACGTGCCAACACTGCCCGAGCCCGCC
TTGAGAAGAAGGTCTTTGCCAAGAGCTGTGCAGAGAGTAGTTGCTGCCATGAACCAGATGGACC
AGAAGAAGCACGAGAAGTTTGCAAATCAATTTAATTATGCACTGAAGTAAAAGGGTGTGGGTGT
GGCGAATG

hide sequence

RefSeq Acc Id:

XM_006251321 ⟹ XP_006251383

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,535,179 - 81,576,444 (-)	NCBI
mRatBN7.2	14	77,309,188 - 77,351,922 (-)	NCBI
Rnor_6.0	14	82,621,028 - 82,658,912 (-)	NCBI
Rnor_5.0	14	83,306,349 - 83,344,222 (-)	NCBI

Sequence:

show sequence

GCCGCGTCCTCGCGCCTGCGCCGTGGAGCCACCCGGGCAAATGCGGGAGACTGGTGGTGGCCTA
ATCTGAAAGGACCAGAGCGGGCGCGCCGCGGTAACTTCCGCTCCTGCGCCGCGGGTCTTCTGGA
GTTTGTGCCCGCCGCTCCCTGGGGCCTGTAACAGAGCGCTGCCTACACCGGAAGGGGTGGGTGA
GACAAGAGGCTGCATCCGGTGGTCCGTGTCACCGGAACAGCGGAACGCTGGTACTGTCTCCTGA
AGCGGAGGGTCAGGCAGCGATTGCGGCGGACTGAAGGGTCGTGGCCGGTCAGATTCTCGGCCCG
CAGGGTCGGATCGGTCGCCCCCGCAGTTATCTAGAGACTGTCGCTTGCAGAGAGAGAGTATCCT
GTGCGACCAGTTGGAGTAAAATTTAGTGACATTTCCCCTTAACCGCGGCAGCGTCACCCACACA
GCTGACCTAAGACTGCTGGAATATGGATCAGAAACTTTCACAGTTGATAGAGGAGCTCACAACT
TCAGGAGAATCCCAACTGAATGCTCAGAAAATGAAGGAACTGAAGAAAATTTGCAAGTCTTCAG
AGGAGCAGCTGAGCCATGCCTACCGCCTGCTAATGACACAGCTGACCCAGGACCACGCTGAGAT
CCGCCTCTCAGCCTTCCAGATCGTGGATGAGCTCTTCACCCGGTCCCATCAGTTCAGAGTGCTG
CTTGTTTCTGACTTCCAGGAATTCCTGGAGCTCACACTGGGCACAGACAATGACCATCCCTTGC
CACCCCCTCGGGAGGCAGCTCAGAGGCTAAGGCAGGCAGCCATGCAAGCTGTGGAAGGTTGGAA
TGAGAAGTTTGGGGAAGCCTATAAGAAGCTAGCCTTGGGCTACCACTTCCTAAAACACACCAAA
AAGGTGGATTTTCGGGATATAAATGTTAGGACTCTGGCAGAAAGGAAGCGAGAAGAGGAGAAGC
AGAAGCACTTGGATAAGATCCACAGAGAAAGTGCTGACCGGGCTAAGAGGGAGATGGAAGAAAT
GTCTGATGAAATTGGATGCTGCCTGACAGAAGTGGAGAACTGCTTTAGGCTGCTGGTGCCCTTG
GATTTGGGCCCGTACCGAGAGGATAAGTTCTTTGGTGAGGCATCTGGCATAGCAGAGGACCATG
CTCCTTGCGCCTGGAGCCCAGACCTGGCAACTCCCCGAGGGTCTGGTCTCTCTGGACCCCAGGA
TGAAGAGCAGCCATGCTGTAGCAAGGACCTGGTTGCCTCTGCACACCATGCAGGATCTGCAGTT
GGTCTGAAGGCACCAGCCCCAGCAGCCACGGAAGACCCCTGCAGGGATGAAGACAGACACAGCG
AACACAGCGACCCAGAGGATTTCCTGCGGAGCCATGGGCTGGGCTCCCACAAGTACACGCTGGA
CGTGGAACTCCCCTCAGACGGTCTGAAGGTACAGGAGAATGAAGACAACCTGGCCGTGCTCCAC
GCTGCTCGAGACTCGCTCAAACTCATCCAGAACAAGTTTCTGCCAGCGGTGTGCTCCTGGGTCC
AGCGGTTTACCCGTGCAGGGATCTACAGTGGACATTTAAAGCAGGCCATTGACCTGAAAATGGA
ACTGGAACTTGCTCTGAAGAAATATGAAGAACTGAACATTGAGCCTGGGAGAGGACAAAGGAGC
AGGACAGAAGCACTGGAGGACAGTGAGGAGGAGGACCAGGACTTCGTGGAGGTTCCAGAGAAAG
AGGGTTACGAGCCTCGAATCCCCGACCATCTACGAGCTGAATATGGGCTGGAGCCAAAGGCCCC
ACTGAAGACTCTGGAGAAACATACAGCTGTATGTAGCGTACAGGAGAGGACCAGGAGGAGAAGG
GAAGAGGAGGCCTCAGACCCCACCTCTGCAGCTGCCCAGATGTTGCGGCTCCAGGACTGCTTGT
CATCTCCCTCCTCCTCCTCTACCAGGGGACCTCTGGGACCAGAAGAAGCCCAGAAGCAAGCGGA
GCGAGCCCGAGCACCCATGGTGCCCTTCGGAGTGGACCTGTGCTACTGGGGCCAGGAGCAGCTA
ACAGCTGGGAAGATTCTTAAATCCGACTCTCAACACCGCTTCTGGAAACCCCACGAGGTAGAGG
AAGAGGTGGACAGTGCCCATGTTTCTGAGATGCTCCACAGCCGACACATTACCTTTTCTGGGAA
ATTCGAGCCTGTGCAGCACAAGTGCCGGGCCCTCAGGCCTAATGGCAGGCTCTGCGAGCGCCAG
GATCGGCTGAAGTGCCCGTTCCATGGGAAGATCATCCCCAGAGATGACAAGGGGCAGCCTCTCA
ACCCTGAAGACAGAGCCCGTGAACAGAGGCAGCAGCTTCAGCAGCAACGGGCACATCCAGATTG
GCAGGACCCTGAGTTTATGAAGGACGTGGAGGCAGCCACAGGGGTGGACCTCGGTTCCTCCAAG
TATAGCAAGAAGGGCAAAGGGAAAAAGAAGAAGCACCCCAACCTCACTGACCTTCGAGAACGTG
CCAACACTGCCCGAGCCCGCCTTGAGAAGAAGGTCTTTGCCAAAGGAGCTGTGCAGAGAGTAGT
TGCTGCCATGAACCAGATGGACCAGAAGAAGCACGAGAAGTTTGCAAATCAATTTAATTATGCA
CTGAAGTAAAAGGGTGTGGGTGTGGCGAATGCGCATGGTCCCCTCTGGCCATCAGCTCCTTCCT
TCCCTTTCAGAGCTCACTGGGATAGGAAGAAGGGCAGGCTTAAGTCTGAGTAGAATTAGAGCTT
TTTTATCTGTGTGTAACAAGGGAAGGATGCACTAAGTACTCTCCAGGAGGCCAGGGGAGGCCAG
GGTTTGAGCCCAACTGTTTTAACCACACGTGTGGTACCACACCTGTAATTGCAACACTTGGAAG
ACATAAACAGGACCGAGGCCAGTATGAAGTACAGAGCAAGACTGCTTGACAAACGAGAACAAAA
AGCCAGATGAGGAGATGCACACCTGTAATCCTCACTCAGGAGGCAGCGCAGGGAGAGCAGCACG
AGCTGAAAGCTAACCTAGTTGCCAGGCATGGCGGTGCGCTTCTTAATGCCAGCACTCAGAAGGC
AAGGCAGGTGGGTCTCTGTGAGTTTGAGACCAGCCTGGTCTACAGAGTGAGTTTCAAGACAGAG
AAACCCTGTCTTGAAAACAAACAAACAAACAAACAAACAGCTAACCTAGTCCAAGTTGTAAGTT
CTTGCTGAGGGTGGGAGGAATCCCTTCGGGATGGTGTACCCGCATTGGAGTCAGATTGGGGCAG
CCACTCATCTGGTCGCAGGTCAGTGCTTGAGCAGTGCATGTGTCCCTGGTGGTGCTATGTACTT
TGTAATGCCTTCAGGAATCTGCTCTTTCGTGATATGCTGTTTAATACAAATGTCCACCTCCTGA
TAAAACTCTGTGGACTGGCTCTGTTGGACCCTAACTCACATGTTATGCAGTCCCCCTACTTTAT
GCACAGAGCTTGACCAATGACACCATCTGCTTCCAGAACTTTATTATCCTCAGACAAACTGCCC
AGCCACCTCTAAGTCCACTTTCTATCTCCATGTTTGTGTTTTTTAGAATAATTGGGTCTGTGGT
TTTTGTTTTTGTTTTGTTTTGTTGAGATGTGGCAATGCCAGCTGGTCTCCAACGCACAGAGATC
CTCCTGCCTCTGCCTCTTCAGTACTGAGATTAAGGGCATGTGCCACCACTCCTGGCTGAATGTG
GCCTTTTGTTGCTGGCTTCTTTGCCTCTGTTTTTTTTGTTTGTTTGTTTGTTTTTTTGTTTTTC
GGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAAT
CCCCAACCCCTTGCCTCTGTTTTAAGATTCTTCCGTATTGTAATACCAATGCTTCATTCCTGTG
TATTGCACATAAAAATCACAGCAGAGGACGAGGGGAACCGCTCCGCAGATAAAGCACTAGCCAT
GCAGTTATGAGGACTGATTGGACTCCACACCACCCATAAAAACCAAGTGGTTGTGCACAGGTTG
CCTCTGCCTCCCGAGTCCTGGGACTAAAGGCGCCACCAAGGCCTGTGTCCATGGGTCCATTATT
GATGTTTGGTCTGTTCCTACCTTAGGGCTGCTGTGAATATCTGTGCTTGAGTTTTTGTGCAGAT
AACTGGTTTTGCTAATCACTGATGCATATAGTAACTTCTCTCTATGAACTAAACTGTCGAATGG
TGGCACCATTTACACTCACCAGTGGTTCCTGAGGGCTCTGTGCCGTCACTGGCTGTCTTCGTTT
CTTTTGCTTTTTTGAGACGTCTGCATGAGAGTACTGTGTTCACATCATTTCCACCCCCCCTGCC
CTCTCCAGAGGTCTCTTCCTCATCATCATATGAAGATAGCTGTTGTCATCTTCAGCAGTAAGGT
CTTACCTTCAGGTTCTGTTAGGCAGCTAAGGGCAGCAGCATTAGCCTGTATTATTTTGGTGGTC
TCTTAACGCCCTGGCCTCAACCTGGGAGGTTTCTGTTCATGCACATGAAGTTTTGTTAGTGTCT
ACTTAAAGACAAAAAAAAATCACATGATTATCTCAATAGATGCAGAAAACACCTTTGACAAAAT
CCAATATGGCTTCATAATAAAACTCTTAGGGAGACTAGGAGTGGAAGGAACATGTAAAGGAAAA
AAAAA

hide sequence

RefSeq Acc Id:

XM_006251323 ⟹ XP_006251385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,535,179 - 81,576,444 (-)	NCBI
mRatBN7.2	14	77,309,188 - 77,351,922 (-)	NCBI
Rnor_6.0	14	82,621,028 - 82,658,912 (-)	NCBI
Rnor_5.0	14	83,306,349 - 83,344,222 (-)	NCBI

Sequence:

show sequence

GCCGCGTCCTCGCGCCTGCGCCGTGGAGCCACCCGGGCAAATGCGGGAGACTGGTGGTGGCCTA
ATCTGAAAGGACCAGAGCGGGCGCGCCGCGGTAACTTCCGCTCCTGCGCCGCGGGTCTTCTGGA
GTTTGTGCCCGCCGCTCCCTGGGGCCTGTAACAGAGCGCTGCCTACACCGGAAGGGATATGGAT
CAGAAACTTTCACAGTTGATAGAGGAGCTCACAACTTCAGGAGAATCCCAACTGAATGCTCAGA
AAATGAAGGAACTGAAGAAAATTTGCAAGTCTTCAGAGGAGCAGCTGAGCCATGCCTACCGCCT
GCTAATGACACAGCTGACCCAGGACCACGCTGAGATCCGCCTCTCAGCCTTCCAGATCGTGGAT
GAGCTCTTCACCCGGTCCCATCAGTTCAGAGTGCTGCTTGTTTCTGACTTCCAGGAATTCCTGG
AGCTCACACTGGGCACAGACAATGACCATCCCTTGCCACCCCCTCGGGAGGCAGCTCAGAGGCT
AAGGCAGGCAGCCATGCAAGCTGTGGAAGGTTGGAATGAGAAGTTTGGGGAAGCCTATAAGAAG
CTAGCCTTGGGCTACCACTTCCTAAAACACACCAAAAAGGTGGATTTTCGGGATATAAATGTTA
GGACTCTGGCAGAAAGGAAGCGAGAAGAGGAGAAGCAGAAGCACTTGGATAAGATCCACAGAGA
AAGTGCTGACCGGGCTAAGAGGGAGATGGAAGAAATGTCTGATGAAATTGGATGCTGCCTGACA
GAAGTGGAGAACTGCTTTAGGCTGCTGGTGCCCTTGGATTTGGGCCCGTACCGAGAGGATAAGT
TCTTTGGTGAGGCATCTGGCATAGCAGAGGACCATGCTCCTTGCGCCTGGAGCCCAGACCTGGC
AACTCCCCGAGGGTCTGGTCTCTCTGGACCCCAGGATGAAGAGCAGCCATGCTGTAGCAAGGAC
CTGGTTGCCTCTGCACACCATGCAGGATCTGCAGTTGGTCTGAAGGCACCAGCCCCAGCAGCCA
CGGAAGACCCCTGCAGGGATGAAGACAGACACAGCGAACACAGCGACCCAGAGGATTTCCTGCG
GAGCCATGGGCTGGGCTCCCACAAGTACACGCTGGACGTGGAACTCCCCTCAGACGGTCTGAAG
GTACAGGAGAATGAAGACAACCTGGCCGTGCTCCACGCTGCTCGAGACTCGCTCAAACTCATCC
AGAACAAGTTTCTGCCAGCGGTGTGCTCCTGGGTCCAGCGGTTTACCCGTGCAGGGATCTACAG
TGGACATTTAAAGCAGGCCATTGACCTGAAAATGGAACTGGAACTTGCTCTGAAGAAATATGAA
GAACTGAACATTGAGCCTGGGAGAGGACAAAGGAGCAGGACAGAAGCACTGGAGGACAGTGAGG
AGGAGGACCAGGACTTCGTGGAGGTTCCAGAGAAAGAGGGTTACGAGCCTCGAATCCCCGACCA
TCTACGAGCTGAATATGGGCTGGAGCCAAAGGCCCCACTGAAGACTCTGGAGAAACATACAGCT
GTATGTAGCGTACAGGAGAGGACCAGGAGGAGAAGGGAAGAGGAGGCCTCAGACCCCACCTCTG
CAGCTGCCCAGATGTTGCGGCTCCAGGACTGCTTGTCATCTCCCTCCTCCTCCTCTACCAGGGG
ACCTCTGGGACCAGAAGAAGCCCAGAAGCAAGCGGAGCGAGCCCGAGCACCCATGGTGCCCTTC
GGAGTGGACCTGTGCTACTGGGGCCAGGAGCAGCTAACAGCTGGGAAGATTCTTAAATCCGACT
CTCAACACCGCTTCTGGAAACCCCACGAGGTAGAGGAAGAGGTGGACAGTGCCCATGTTTCTGA
GATGCTCCACAGCCGACACATTACCTTTTCTGGGAAATTCGAGCCTGTGCAGCACAAGTGCCGG
GCCCTCAGGCCTAATGGCAGGCTCTGCGAGCGCCAGGATCGGCTGAAGTGCCCGTTCCATGGGA
AGATCATCCCCAGAGATGACAAGGGGCAGCCTCTCAACCCTGAAGACAGAGCCCGTGAACAGAG
GCAGCAGCTTCAGCAGCAACGGGCACATCCAGATTGGCAGGACCCTGAGTTTATGAAGGACGTG
GAGGCAGCCACAGGGGTGGACCTCGGTTCCTCCAAGTATAGCAAGAAGGGCAAAGGGAAAAAGA
AGAAGCACCCCAACCTCACTGACCTTCGAGAACGTGCCAACACTGCCCGAGCCCGCCTTGAGAA
GAAGGTCTTTGCCAAAGGAGCTGTGCAGAGAGTAGTTGCTGCCATGAACCAGATGGACCAGAAG
AAGCACGAGAAGTTTGCAAATCAATTTAATTATGCACTGAAGTAAAAGGGTGTGGGTGTGGCGA
ATGCGCATGGTCCCCTCTGGCCATCAGCTCCTTCCTTCCCTTTCAGAGCTCACTGGGATAGGAA
GAAGGGCAGGCTTAAGTCTGAGTAGAATTAGAGCTTTTTTATCTGTGTGTAACAAGGGAAGGAT
GCACTAAGTACTCTCCAGGAGGCCAGGGGAGGCCAGGGTTTGAGCCCAACTGTTTTAACCACAC
GTGTGGTACCACACCTGTAATTGCAACACTTGGAAGACATAAACAGGACCGAGGCCAGTATGAA
GTACAGAGCAAGACTGCTTGACAAACGAGAACAAAAAGCCAGATGAGGAGATGCACACCTGTAA
TCCTCACTCAGGAGGCAGCGCAGGGAGAGCAGCACGAGCTGAAAGCTAACCTAGTTGCCAGGCA
TGGCGGTGCGCTTCTTAATGCCAGCACTCAGAAGGCAAGGCAGGTGGGTCTCTGTGAGTTTGAG
ACCAGCCTGGTCTACAGAGTGAGTTTCAAGACAGAGAAACCCTGTCTTGAAAACAAACAAACAA
ACAAACAAACAGCTAACCTAGTCCAAGTTGTAAGTTCTTGCTGAGGGTGGGAGGAATCCCTTCG
GGATGGTGTACCCGCATTGGAGTCAGATTGGGGCAGCCACTCATCTGGTCGCAGGTCAGTGCTT
GAGCAGTGCATGTGTCCCTGGTGGTGCTATGTACTTTGTAATGCCTTCAGGAATCTGCTCTTTC
GTGATATGCTGTTTAATACAAATGTCCACCTCCTGATAAAACTCTGTGGACTGGCTCTGTTGGA
CCCTAACTCACATGTTATGCAGTCCCCCTACTTTATGCACAGAGCTTGACCAATGACACCATCT
GCTTCCAGAACTTTATTATCCTCAGACAAACTGCCCAGCCACCTCTAAGTCCACTTTCTATCTC
CATGTTTGTGTTTTTTAGAATAATTGGGTCTGTGGTTTTTGTTTTTGTTTTGTTTTGTTGAGAT
GTGGCAATGCCAGCTGGTCTCCAACGCACAGAGATCCTCCTGCCTCTGCCTCTTCAGTACTGAG
ATTAAGGGCATGTGCCACCACTCCTGGCTGAATGTGGCCTTTTGTTGCTGGCTTCTTTGCCTCT
GTTTTTTTTGTTTGTTTGTTTGTTTTTTTGTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTG
CGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTGCCTCTGTTTTAAGAT
TCTTCCGTATTGTAATACCAATGCTTCATTCCTGTGTATTGCACATAAAAATCACAGCAGAGGA
CGAGGGGAACCGCTCCGCAGATAAAGCACTAGCCATGCAGTTATGAGGACTGATTGGACTCCAC
ACCACCCATAAAAACCAAGTGGTTGTGCACAGGTTGCCTCTGCCTCCCGAGTCCTGGGACTAAA
GGCGCCACCAAGGCCTGTGTCCATGGGTCCATTATTGATGTTTGGTCTGTTCCTACCTTAGGGC
TGCTGTGAATATCTGTGCTTGAGTTTTTGTGCAGATAACTGGTTTTGCTAATCACTGATGCATA
TAGTAACTTCTCTCTATGAACTAAACTGTCGAATGGTGGCACCATTTACACTCACCAGTGGTTC
CTGAGGGCTCTGTGCCGTCACTGGCTGTCTTCGTTTCTTTTGCTTTTTTGAGACGTCTGCATGA
GAGTACTGTGTTCACATCATTTCCACCCCCCCTGCCCTCTCCAGAGGTCTCTTCCTCATCATCA
TATGAAGATAGCTGTTGTCATCTTCAGCAGTAAGGTCTTACCTTCAGGTTCTGTTAGGCAGCTA
AGGGCAGCAGCATTAGCCTGTATTATTTTGGTGGTCTCTTAACGCCCTGGCCTCAACCTGGGAG
GTTTCTGTTCATGCACATGAAGTTTTGTTAGTGTCTACTTAAAGACAAAAAAAAATCACATGAT
TATCTCAATAGATGCAGAAAACACCTTTGACAAAATCCAATATGGCTTCATAATAAAACTCTTA
GGGAGACTAGGAGTGGAAGGAACATGTAAAGGAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006251324 ⟹ XP_006251386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,535,179 - 81,576,244 (-)	NCBI
mRatBN7.2	14	77,309,188 - 77,351,724 (-)	NCBI
Rnor_6.0	14	82,621,028 - 82,658,722 (-)	NCBI
Rnor_5.0	14	83,306,349 - 83,344,222 (-)	NCBI

Sequence:

show sequence

GAGACAAGAGGCTGCATCCGGTGGTCCGTGTCACCGGAACAGCGGAACGCTGGTACTGTCTCCT
GAAGCGGAGGGTCAGGCAGCGATTGCGGCGGACTGAAGGGTCGTGGCCGATATGGATCAGAAAC
TTTCACAGTTGATAGAGGAGCTCACAACTTCAGGAGAATCCCAACTGAATGCTCAGAAAATGAA
GGAACTGAAGAAAATTTGCAAGTCTTCAGAGGAGCAGCTGAGCCATGCCTACCGCCTGCTAATG
ACACAGCTGACCCAGGACCACGCTGAGATCCGCCTCTCAGCCTTCCAGATCGTGGATGAGCTCT
TCACCCGGTCCCATCAGTTCAGAGTGCTGCTTGTTTCTGACTTCCAGGAATTCCTGGAGCTCAC
ACTGGGCACAGACAATGACCATCCCTTGCCACCCCCTCGGGAGGCAGCTCAGAGGCTAAGGCAG
GCAGCCATGCAAGCTGTGGAAGGTTGGAATGAGAAGTTTGGGGAAGCCTATAAGAAGCTAGCCT
TGGGCTACCACTTCCTAAAACACACCAAAAAGGTGGATTTTCGGGATATAAATGTTAGGACTCT
GGCAGAAAGGAAGCGAGAAGAGGAGAAGCAGAAGCACTTGGATAAGATCCACAGAGAAAGTGCT
GACCGGGCTAAGAGGGAGATGGAAGAAATGTCTGATGAAATTGGATGCTGCCTGACAGAAGTGG
AGAACTGCTTTAGGCTGCTGGTGCCCTTGGATTTGGGCCCGTACCGAGAGGATAAGTTCTTTGG
TGAGGCATCTGGCATAGCAGAGGACCATGCTCCTTGCGCCTGGAGCCCAGACCTGGCAACTCCC
CGAGGGTCTGGTCTCTCTGGACCCCAGGATGAAGAGCAGCCATGCTGTAGCAAGGACCTGGTTG
CCTCTGCACACCATGCAGGATCTGCAGTTGGTCTGAAGGCACCAGCCCCAGCAGCCACGGAAGA
CCCCTGCAGGGATGAAGACAGACACAGCGAACACAGCGACCCAGAGGATTTCCTGCGGAGCCAT
GGGCTGGGCTCCCACAAGTACACGCTGGACGTGGAACTCCCCTCAGACGGTCTGAAGGTACAGG
AGAATGAAGACAACCTGGCCGTGCTCCACGCTGCTCGAGACTCGCTCAAACTCATCCAGAACAA
GTTTCTGCCAGCGGTGTGCTCCTGGGTCCAGCGGTTTACCCGTGCAGGGATCTACAGTGGACAT
TTAAAGCAGGCCATTGACCTGAAAATGGAACTGGAACTTGCTCTGAAGAAATATGAAGAACTGA
ACATTGAGCCTGGGAGAGGACAAAGGAGCAGGACAGAAGCACTGGAGGACAGTGAGGAGGAGGA
CCAGGACTTCGTGGAGGTTCCAGAGAAAGAGGGTTACGAGCCTCGAATCCCCGACCATCTACGA
GCTGAATATGGGCTGGAGCCAAAGGCCCCACTGAAGACTCTGGAGAAACATACAGCTGTATGTA
GCGTACAGGAGAGGACCAGGAGGAGAAGGGAAGAGGAGGCCTCAGACCCCACCTCTGCAGCTGC
CCAGATGTTGCGGCTCCAGGACTGCTTGTCATCTCCCTCCTCCTCCTCTACCAGGGGACCTCTG
GGACCAGAAGAAGCCCAGAAGCAAGCGGAGCGAGCCCGAGCACCCATGGTGCCCTTCGGAGTGG
ACCTGTGCTACTGGGGCCAGGAGCAGCTAACAGCTGGGAAGATTCTTAAATCCGACTCTCAACA
CCGCTTCTGGAAACCCCACGAGGTAGAGGAAGAGGTGGACAGTGCCCATGTTTCTGAGATGCTC
CACAGCCGACACATTACCTTTTCTGGGAAATTCGAGCCTGTGCAGCACAAGTGCCGGGCCCTCA
GGCCTAATGGCAGGCTCTGCGAGCGCCAGGATCGGCTGAAGTGCCCGTTCCATGGGAAGATCAT
CCCCAGAGATGACAAGGGGCAGCCTCTCAACCCTGAAGACAGAGCCCGTGAACAGAGGCAGCAG
CTTCAGCAGCAACGGGCACATCCAGATTGGCAGGACCCTGAGTTTATGAAGGACGTGGAGGCAG
CCACAGGGGTGGACCTCGGTTCCTCCAAGTATAGCAAGAAGGGCAAAGGGAAAAAGAAGAAGCA
CCCCAACCTCACTGACCTTCGAGAACGTGCCAACACTGCCCGAGCCCGCCTTGAGAAGAAGGTC
TTTGCCAAAGGAGCTGTGCAGAGAGTAGTTGCTGCCATGAACCAGATGGACCAGAAGAAGCACG
AGAAGTTTGCAAATCAATTTAATTATGCACTGAAGTAAAAGGGTGTGGGTGTGGCGAATGCGCA
TGGTCCCCTCTGGCCATCAGCTCCTTCCTTCCCTTTCAGAGCTCACTGGGATAGGAAGAAGGGC
AGGCTTAAGTCTGAGTAGAATTAGAGCTTTTTTATCTGTGTGTAACAAGGGAAGGATGCACTAA
GTACTCTCCAGGAGGCCAGGGGAGGCCAGGGTTTGAGCCCAACTGTTTTAACCACACGTGTGGT
ACCACACCTGTAATTGCAACACTTGGAAGACATAAACAGGACCGAGGCCAGTATGAAGTACAGA
GCAAGACTGCTTGACAAACGAGAACAAAAAGCCAGATGAGGAGATGCACACCTGTAATCCTCAC
TCAGGAGGCAGCGCAGGGAGAGCAGCACGAGCTGAAAGCTAACCTAGTTGCCAGGCATGGCGGT
GCGCTTCTTAATGCCAGCACTCAGAAGGCAAGGCAGGTGGGTCTCTGTGAGTTTGAGACCAGCC
TGGTCTACAGAGTGAGTTTCAAGACAGAGAAACCCTGTCTTGAAAACAAACAAACAAACAAACA
AACAGCTAACCTAGTCCAAGTTGTAAGTTCTTGCTGAGGGTGGGAGGAATCCCTTCGGGATGGT
GTACCCGCATTGGAGTCAGATTGGGGCAGCCACTCATCTGGTCGCAGGTCAGTGCTTGAGCAGT
GCATGTGTCCCTGGTGGTGCTATGTACTTTGTAATGCCTTCAGGAATCTGCTCTTTCGTGATAT
GCTGTTTAATACAAATGTCCACCTCCTGATAAAACTCTGTGGACTGGCTCTGTTGGACCCTAAC
TCACATGTTATGCAGTCCCCCTACTTTATGCACAGAGCTTGACCAATGACACCATCTGCTTCCA
GAACTTTATTATCCTCAGACAAACTGCCCAGCCACCTCTAAGTCCACTTTCTATCTCCATGTTT
GTGTTTTTTAGAATAATTGGGTCTGTGGTTTTTGTTTTTGTTTTGTTTTGTTGAGATGTGGCAA
TGCCAGCTGGTCTCCAACGCACAGAGATCCTCCTGCCTCTGCCTCTTCAGTACTGAGATTAAGG
GCATGTGCCACCACTCCTGGCTGAATGTGGCCTTTTGTTGCTGGCTTCTTTGCCTCTGTTTTTT
TTGTTTGTTTGTTTGTTTTTTTGTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGC
TAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTGCCTCTGTTTTAAGATTCTTCCG
TATTGTAATACCAATGCTTCATTCCTGTGTATTGCACATAAAAATCACAGCAGAGGACGAGGGG
AACCGCTCCGCAGATAAAGCACTAGCCATGCAGTTATGAGGACTGATTGGACTCCACACCACCC
ATAAAAACCAAGTGGTTGTGCACAGGTTGCCTCTGCCTCCCGAGTCCTGGGACTAAAGGCGCCA
CCAAGGCCTGTGTCCATGGGTCCATTATTGATGTTTGGTCTGTTCCTACCTTAGGGCTGCTGTG
AATATCTGTGCTTGAGTTTTTGTGCAGATAACTGGTTTTGCTAATCACTGATGCATATAGTAAC
TTCTCTCTATGAACTAAACTGTCGAATGGTGGCACCATTTACACTCACCAGTGGTTCCTGAGGG
CTCTGTGCCGTCACTGGCTGTCTTCGTTTCTTTTGCTTTTTTGAGACGTCTGCATGAGAGTACT
GTGTTCACATCATTTCCACCCCCCCTGCCCTCTCCAGAGGTCTCTTCCTCATCATCATATGAAG
ATAGCTGTTGTCATCTTCAGCAGTAAGGTCTTACCTTCAGGTTCTGTTAGGCAGCTAAGGGCAG
CAGCATTAGCCTGTATTATTTTGGTGGTCTCTTAACGCCCTGGCCTCAACCTGGGAGGTTTCTG
TTCATGCACATGAAGTTTTGTTAGTGTCTACTTAAAGACAAAAAAAAATCACATGATTATCTCA
ATAGATGCAGAAAACACCTTTGACAAAATCCAATATGGCTTCATAATAAAACTCTTAGGGAGAC
TAGGAGTGGAAGGAACATGTAAAGGAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006251325 ⟹ XP_006251387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,535,179 - 81,576,444 (-)	NCBI
mRatBN7.2	14	77,309,188 - 77,351,922 (-)	NCBI
Rnor_6.0	14	82,621,028 - 82,658,912 (-)	NCBI
Rnor_5.0	14	83,306,349 - 83,344,222 (-)	NCBI

Sequence:

show sequence

GCCGCGTCCTCGCGCCTGCGCCGTGGAGCCACCCGGGCAAATGCGGGAGACTGGTGGTGGCCTA
ATCTGAAAGGACCAGAGCGGGCGCGCCGCGGTAACTTCCGCTCCTGCGCCGCGGGTCTTCTGGA
GTTTGTGCCCGCCGCTCCCTGGGGCCTGTAACAGAGCGCTGCCTACACCGGAAGGGGTGGGTGA
GACAAGAGGCTGCATCCGGTGGTCCGTGTCACCGGAACAGCGGAACGCTGATATGGATCAGAAA
CTTTCACAGTTGATAGAGGAGCTCACAACTTCAGGAGAATCCCAACTGAATGCTCAGAAAATGA
AGGAACTGAAGAAAATTTGCAAGTCTTCAGAGGAGCAGCTGAGCCATGCCTACCGCCTGCTAAT
GACACAGCTGACCCAGGACCACGCTGAGATCCGCCTCTCAGCCTTCCAGATCGTGGATGAGCTC
TTCACCCGGTCCCATCAGTTCAGAGTGCTGCTTGTTTCTGACTTCCAGGAATTCCTGGAGCTCA
CACTGGGCACAGACAATGACCATCCCTTGCCACCCCCTCGGGAGGCAGCTCAGAGGCTAAGGCA
GGCAGCCATGCAAGCTGTGGAAGGTTGGAATGAGAAGTTTGGGGAAGCCTATAAGAAGCTAGCC
TTGGGCTACCACTTCCTAAAACACACCAAAAAGGTGGATTTTCGGGATATAAATGTTAGGACTC
TGGCAGAAAGGAAGCGAGAAGAGGAGAAGCAGAAGCACTTGGATAAGATCCACAGAGAAAGTGC
TGACCGGGCTAAGAGGGAGATGGAAGAAATGTCTGATGAAATTGGATGCTGCCTGACAGAAGTG
GAGAACTGCTTTAGGCTGCTGGTGCCCTTGGATTTGGGCCCGTACCGAGAGGATAAGTTCTTTG
GTGAGGCATCTGGCATAGCAGAGGACCATGCTCCTTGCGCCTGGAGCCCAGACCTGGCAACTCC
CCGAGGGTCTGGTCTCTCTGGACCCCAGGATGAAGAGCAGCCATGCTGTAGCAAGGACCTGGTT
GCCTCTGCACACCATGCAGGATCTGCAGTTGGTCTGAAGGCACCAGCCCCAGCAGCCACGGAAG
ACCCCTGCAGGGATGAAGACAGACACAGCGAACACAGCGACCCAGAGGATTTCCTGCGGAGCCA
TGGGCTGGGCTCCCACAAGTACACGCTGGACGTGGAACTCCCCTCAGACGGTCTGAAGGTACAG
GAGAATGAAGACAACCTGGCCGTGCTCCACGCTGCTCGAGACTCGCTCAAACTCATCCAGAACA
AGTTTCTGCCAGCGGTGTGCTCCTGGGTCCAGCGGTTTACCCGTGCAGGGATCTACAGTGGACA
TTTAAAGCAGGCCATTGACCTGAAAATGGAACTGGAACTTGCTCTGAAGAAATATGAAGAACTG
AACATTGAGCCTGGGAGAGGACAAAGGAGCAGGACAGAAGCACTGGAGGACAGTGAGGAGGAGG
ACCAGGACTTCGTGGAGGTTCCAGAGAAAGAGGGTTACGAGCCTCGAATCCCCGACCATCTACG
AGCTGAATATGGGCTGGAGCCAAAGGCCCCACTGAAGACTCTGGAGAAACATACAGCTGTATGT
AGCGTACAGGAGAGGACCAGGAGGAGAAGGGAAGAGGAGGCCTCAGACCCCACCTCTGCAGCTG
CCCAGATGTTGCGGCTCCAGGACTGCTTGTCATCTCCCTCCTCCTCCTCTACCAGGGGACCTCT
GGGACCAGAAGAAGCCCAGAAGCAAGCGGAGCGAGCCCGAGCACCCATGGTGCCCTTCGGAGTG
GACCTGTGCTACTGGGGCCAGGAGCAGCTAACAGCTGGGAAGATTCTTAAATCCGACTCTCAAC
ACCGCTTCTGGAAACCCCACGAGGTAGAGGAAGAGGTGGACAGTGCCCATGTTTCTGAGATGCT
CCACAGCCGACACATTACCTTTTCTGGGAAATTCGAGCCTGTGCAGCACAAGTGCCGGGCCCTC
AGGCCTAATGGCAGGCTCTGCGAGCGCCAGGATCGGCTGAAGTGCCCGTTCCATGGGAAGATCA
TCCCCAGAGATGACAAGGGGCAGCCTCTCAACCCTGAAGACAGAGCCCGTGAACAGAGGCAGCA
GCTTCAGCAGCAACGGGCACATCCAGATTGGCAGGACCCTGAGTTTATGAAGGACGTGGAGGCA
GCCACAGGGGTGGACCTCGGTTCCTCCAAGTATAGCAAGAAGGGCAAAGGGAAAAAGAAGAAGC
ACCCCAACCTCACTGACCTTCGAGAACGTGCCAACACTGCCCGAGCCCGCCTTGAGAAGAAGGT
CTTTGCCAAAGGAGCTGTGCAGAGAGTAGTTGCTGCCATGAACCAGATGGACCAGAAGAAGCAC
GAGAAGTTTGCAAATCAATTTAATTATGCACTGAAGTAAAAGGGTGTGGGTGTGGCGAATGCGC
ATGGTCCCCTCTGGCCATCAGCTCCTTCCTTCCCTTTCAGAGCTCACTGGGATAGGAAGAAGGG
CAGGCTTAAGTCTGAGTAGAATTAGAGCTTTTTTATCTGTGTGTAACAAGGGAAGGATGCACTA
AGTACTCTCCAGGAGGCCAGGGGAGGCCAGGGTTTGAGCCCAACTGTTTTAACCACACGTGTGG
TACCACACCTGTAATTGCAACACTTGGAAGACATAAACAGGACCGAGGCCAGTATGAAGTACAG
AGCAAGACTGCTTGACAAACGAGAACAAAAAGCCAGATGAGGAGATGCACACCTGTAATCCTCA
CTCAGGAGGCAGCGCAGGGAGAGCAGCACGAGCTGAAAGCTAACCTAGTTGCCAGGCATGGCGG
TGCGCTTCTTAATGCCAGCACTCAGAAGGCAAGGCAGGTGGGTCTCTGTGAGTTTGAGACCAGC
CTGGTCTACAGAGTGAGTTTCAAGACAGAGAAACCCTGTCTTGAAAACAAACAAACAAACAAAC
AAACAGCTAACCTAGTCCAAGTTGTAAGTTCTTGCTGAGGGTGGGAGGAATCCCTTCGGGATGG
TGTACCCGCATTGGAGTCAGATTGGGGCAGCCACTCATCTGGTCGCAGGTCAGTGCTTGAGCAG
TGCATGTGTCCCTGGTGGTGCTATGTACTTTGTAATGCCTTCAGGAATCTGCTCTTTCGTGATA
TGCTGTTTAATACAAATGTCCACCTCCTGATAAAACTCTGTGGACTGGCTCTGTTGGACCCTAA
CTCACATGTTATGCAGTCCCCCTACTTTATGCACAGAGCTTGACCAATGACACCATCTGCTTCC
AGAACTTTATTATCCTCAGACAAACTGCCCAGCCACCTCTAAGTCCACTTTCTATCTCCATGTT
TGTGTTTTTTAGAATAATTGGGTCTGTGGTTTTTGTTTTTGTTTTGTTTTGTTGAGATGTGGCA
ATGCCAGCTGGTCTCCAACGCACAGAGATCCTCCTGCCTCTGCCTCTTCAGTACTGAGATTAAG
GGCATGTGCCACCACTCCTGGCTGAATGTGGCCTTTTGTTGCTGGCTTCTTTGCCTCTGTTTTT
TTTGTTTGTTTGTTTGTTTTTTTGTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTG
CTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTGCCTCTGTTTTAAGATTCTTCC
GTATTGTAATACCAATGCTTCATTCCTGTGTATTGCACATAAAAATCACAGCAGAGGACGAGGG
GAACCGCTCCGCAGATAAAGCACTAGCCATGCAGTTATGAGGACTGATTGGACTCCACACCACC
CATAAAAACCAAGTGGTTGTGCACAGGTTGCCTCTGCCTCCCGAGTCCTGGGACTAAAGGCGCC
ACCAAGGCCTGTGTCCATGGGTCCATTATTGATGTTTGGTCTGTTCCTACCTTAGGGCTGCTGT
GAATATCTGTGCTTGAGTTTTTGTGCAGATAACTGGTTTTGCTAATCACTGATGCATATAGTAA
CTTCTCTCTATGAACTAAACTGTCGAATGGTGGCACCATTTACACTCACCAGTGGTTCCTGAGG
GCTCTGTGCCGTCACTGGCTGTCTTCGTTTCTTTTGCTTTTTTGAGACGTCTGCATGAGAGTAC
TGTGTTCACATCATTTCCACCCCCCCTGCCCTCTCCAGAGGTCTCTTCCTCATCATCATATGAA
GATAGCTGTTGTCATCTTCAGCAGTAAGGTCTTACCTTCAGGTTCTGTTAGGCAGCTAAGGGCA
GCAGCATTAGCCTGTATTATTTTGGTGGTCTCTTAACGCCCTGGCCTCAACCTGGGAGGTTTCT
GTTCATGCACATGAAGTTTTGTTAGTGTCTACTTAAAGACAAAAAAAAATCACATGATTATCTC
AATAGATGCAGAAAACACCTTTGACAAAATCCAATATGGCTTCATAATAAAACTCTTAGGGAGA
CTAGGAGTGGAAGGAACATGTAAAGGAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039092133 ⟹ XP_038948061

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,535,179 - 81,576,258 (-)	NCBI
mRatBN7.2	14	77,309,188 - 77,351,734 (-)	NCBI

RefSeq Acc Id:

XM_039092137 ⟹ XP_038948065

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,535,179 - 81,576,443 (-)	NCBI
mRatBN7.2	14	77,309,188 - 77,351,921 (-)	NCBI

RefSeq Acc Id:

XM_039092138 ⟹ XP_038948066

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,544,642 - 81,576,258 (-)	NCBI
mRatBN7.2	14	77,320,114 - 77,351,734 (-)	NCBI

RefSeq Acc Id:

XM_039092140 ⟹ XP_038948068

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,544,583 - 81,576,258 (-)	NCBI
mRatBN7.2	14	77,320,058 - 77,351,734 (-)	NCBI

RefSeq Acc Id:

XM_063273304 ⟹ XP_063129374

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,535,179 - 81,576,258 (-)	NCBI

RefSeq Acc Id:

XM_063273305 ⟹ XP_063129375

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,535,179 - 81,575,768 (-)	NCBI

RefSeq Acc Id:

XM_063273306 ⟹ XP_063129376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,535,179 - 81,576,444 (-)	NCBI

RefSeq Acc Id:

XM_063273308 ⟹ XP_063129378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	81,535,179 - 81,576,236 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128030	(Get FASTA)	NCBI Sequence Viewer
	NP_001423889	(Get FASTA)	NCBI Sequence Viewer
	XP_006251383	(Get FASTA)	NCBI Sequence Viewer
	XP_006251385	(Get FASTA)	NCBI Sequence Viewer
	XP_006251386	(Get FASTA)	NCBI Sequence Viewer
	XP_006251387	(Get FASTA)	NCBI Sequence Viewer
	XP_038948061	(Get FASTA)	NCBI Sequence Viewer
	XP_038948065	(Get FASTA)	NCBI Sequence Viewer
	XP_038948066	(Get FASTA)	NCBI Sequence Viewer
	XP_038948068	(Get FASTA)	NCBI Sequence Viewer
	XP_063129374	(Get FASTA)	NCBI Sequence Viewer
	XP_063129375	(Get FASTA)	NCBI Sequence Viewer
	XP_063129376	(Get FASTA)	NCBI Sequence Viewer
	XP_063129378	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D3ZND0	(Get FASTA)	NCBI Sequence Viewer
	EDM00129	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006841
	ENSRNOP00000006841.6
	ENSRNOP00000099106
	ENSRNOP00000112232

RefSeq Acc Id:

NP_001128030 ⟸ NM_001134558

- Sequence:

show sequence

MDQKLSQLIEELTTSGESQLNAQKMKELKKICKSSEEQLSHAYRLLMTQLTQDHAEIRLSAFQI
VDELFTRSHQFRVLLVSDFQEFLELTLGTDNDHPLPPPREAAQRLRQAAMQAVEGWNEKFGEAY
KKLALGYHFLKHTKKVDFRDINVRTLAERKREEEKQKHLDKIHRESADRAKREMEEMSDEIGCC
LTEVENCFRLLVPLDLGPYREDKFFGEASGIAEDHAPCAWSPDLATPRGSGLSGPQDEEQPCCS
KDLVASAHHAGSAVGLKAPAPAATEDPCRDEDRHSEHSDPEDFLRSHGLGSHKYTLDVELPSDG
LKVQENEDNLAVLHAARDSLKLIQNKFLPAVCSWVQRFTRAGIYSGHLKQAIDLKMELELALKK
YEELNIEPGRGQRSRTEALEDSEEEDQDFVEVPEKEGYEPRIPDHLRAEYGLEPKAPLKTLEKH
TAVCSVQERTRRRREEEASDPTSAAAQMLRLQDCLSSPSSSSTRGPLGPEEAQKQAERARAPMV
PFGVDLCYWGQEQLTAGKILKSDSQHRFWKPHEVEEEVDSAHVSEMLHSRHITFSGKFEPVQHK
CRALRPNGRLCERQDRLKCPFHGKIIPRDDKGQPLNPEDRAREQRQQLQQQRAHPDWQDPEFMK
DVEAATGVDLGSSKYSKKGKGKKKKHPNLTDLRERANTARARLEKKVFAKSCAESSCCHEPDGP
EEAREVCKSI

hide sequence

RefSeq Acc Id:	XP_006251383 ⟸ XM_006251321
- Peptide Label:	isoform X1
- UniProtKB:	D3ZND0 (UniProtKB/Swiss-Prot), A0A096P6L4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDQKLSQLIEELTTSGESQLNAQKMKELKKICKSSEEQLSHAYRLLMTQLTQDHAEIRLSAFQI VDELFTRSHQFRVLLVSDFQEFLELTLGTDNDHPLPPPREAAQRLRQAAMQAVEGWNEKFGEAY KKLALGYHFLKHTKKVDFRDINVRTLAERKREEEKQKHLDKIHRESADRAKREMEEMSDEIGCC LTEVENCFRLLVPLDLGPYREDKFFGEASGIAEDHAPCAWSPDLATPRGSGLSGPQDEEQPCCS KDLVASAHHAGSAVGLKAPAPAATEDPCRDEDRHSEHSDPEDFLRSHGLGSHKYTLDVELPSDG LKVQENEDNLAVLHAARDSLKLIQNKFLPAVCSWVQRFTRAGIYSGHLKQAIDLKMELELALKK YEELNIEPGRGQRSRTEALEDSEEEDQDFVEVPEKEGYEPRIPDHLRAEYGLEPKAPLKTLEKH TAVCSVQERTRRRREEEASDPTSAAAQMLRLQDCLSSPSSSSTRGPLGPEEAQKQAERARAPMV PFGVDLCYWGQEQLTAGKILKSDSQHRFWKPHEVEEEVDSAHVSEMLHSRHITFSGKFEPVQHK CRALRPNGRLCERQDRLKCPFHGKIIPRDDKGQPLNPEDRAREQRQQLQQQRAHPDWQDPEFMK DVEAATGVDLGSSKYSKKGKGKKKKHPNLTDLRERANTARARLEKKVFAKGAVQRVVAAMNQMD QKKHEKFANQFNYALK hide sequence

RefSeq Acc Id:

XP_006251385 ⟸ XM_006251323

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDQKLSQLIEELTTSGESQLNAQKMKELKKICKSSEEQLSHAYRLLMTQLTQDHAEIRLSAFQI
VDELFTRSHQFRVLLVSDFQEFLELTLGTDNDHPLPPPREAAQRLRQAAMQAVEGWNEKFGEAY
KKLALGYHFLKHTKKVDFRDINVRTLAERKREEEKQKHLDKIHRESADRAKREMEEMSDEIGCC
LTEVENCFRLLVPLDLGPYREDKFFGEASGIAEDHAPCAWSPDLATPRGSGLSGPQDEEQPCCS
KDLVASAHHAGSAVGLKAPAPAATEDPCRDEDRHSEHSDPEDFLRSHGLGSHKYTLDVELPSDG
LKVQENEDNLAVLHAARDSLKLIQNKFLPAVCSWVQRFTRAGIYSGHLKQAIDLKMELELALKK
YEELNIEPGRGQRSRTEALEDSEEEDQDFVEVPEKEGYEPRIPDHLRAEYGLEPKAPLKTLEKH
TAVCSVQERTRRRREEEASDPTSAAAQMLRLQDCLSSPSSSSTRGPLGPEEAQKQAERARAPMV
PFGVDLCYWGQEQLTAGKILKSDSQHRFWKPHEVEEEVDSAHVSEMLHSRHITFSGKFEPVQHK
CRALRPNGRLCERQDRLKCPFHGKIIPRDDKGQPLNPEDRAREQRQQLQQQRAHPDWQDPEFMK
DVEAATGVDLGSSKYSKKGKGKKKKHPNLTDLRERANTARARLEKKVFAKGAVQRVVAAMNQMD
QKKHEKFANQFNYALK

hide sequence

RefSeq Acc Id:	XP_006251386 ⟸ XM_006251324
- Peptide Label:	isoform X1
- UniProtKB:	D3ZND0 (UniProtKB/Swiss-Prot), A0A096P6L4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDQKLSQLIEELTTSGESQLNAQKMKELKKICKSSEEQLSHAYRLLMTQLTQDHAEIRLSAFQI VDELFTRSHQFRVLLVSDFQEFLELTLGTDNDHPLPPPREAAQRLRQAAMQAVEGWNEKFGEAY KKLALGYHFLKHTKKVDFRDINVRTLAERKREEEKQKHLDKIHRESADRAKREMEEMSDEIGCC LTEVENCFRLLVPLDLGPYREDKFFGEASGIAEDHAPCAWSPDLATPRGSGLSGPQDEEQPCCS KDLVASAHHAGSAVGLKAPAPAATEDPCRDEDRHSEHSDPEDFLRSHGLGSHKYTLDVELPSDG LKVQENEDNLAVLHAARDSLKLIQNKFLPAVCSWVQRFTRAGIYSGHLKQAIDLKMELELALKK YEELNIEPGRGQRSRTEALEDSEEEDQDFVEVPEKEGYEPRIPDHLRAEYGLEPKAPLKTLEKH TAVCSVQERTRRRREEEASDPTSAAAQMLRLQDCLSSPSSSSTRGPLGPEEAQKQAERARAPMV PFGVDLCYWGQEQLTAGKILKSDSQHRFWKPHEVEEEVDSAHVSEMLHSRHITFSGKFEPVQHK CRALRPNGRLCERQDRLKCPFHGKIIPRDDKGQPLNPEDRAREQRQQLQQQRAHPDWQDPEFMK DVEAATGVDLGSSKYSKKGKGKKKKHPNLTDLRERANTARARLEKKVFAKGAVQRVVAAMNQMD QKKHEKFANQFNYALK hide sequence

RefSeq Acc Id:	XP_006251387 ⟸ XM_006251325
- Peptide Label:	isoform X1
- UniProtKB:	D3ZND0 (UniProtKB/Swiss-Prot), A0A096P6L4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDQKLSQLIEELTTSGESQLNAQKMKELKKICKSSEEQLSHAYRLLMTQLTQDHAEIRLSAFQI VDELFTRSHQFRVLLVSDFQEFLELTLGTDNDHPLPPPREAAQRLRQAAMQAVEGWNEKFGEAY KKLALGYHFLKHTKKVDFRDINVRTLAERKREEEKQKHLDKIHRESADRAKREMEEMSDEIGCC LTEVENCFRLLVPLDLGPYREDKFFGEASGIAEDHAPCAWSPDLATPRGSGLSGPQDEEQPCCS KDLVASAHHAGSAVGLKAPAPAATEDPCRDEDRHSEHSDPEDFLRSHGLGSHKYTLDVELPSDG LKVQENEDNLAVLHAARDSLKLIQNKFLPAVCSWVQRFTRAGIYSGHLKQAIDLKMELELALKK YEELNIEPGRGQRSRTEALEDSEEEDQDFVEVPEKEGYEPRIPDHLRAEYGLEPKAPLKTLEKH TAVCSVQERTRRRREEEASDPTSAAAQMLRLQDCLSSPSSSSTRGPLGPEEAQKQAERARAPMV PFGVDLCYWGQEQLTAGKILKSDSQHRFWKPHEVEEEVDSAHVSEMLHSRHITFSGKFEPVQHK CRALRPNGRLCERQDRLKCPFHGKIIPRDDKGQPLNPEDRAREQRQQLQQQRAHPDWQDPEFMK DVEAATGVDLGSSKYSKKGKGKKKKHPNLTDLRERANTARARLEKKVFAKGAVQRVVAAMNQMD QKKHEKFANQFNYALK hide sequence

Ensembl Acc Id:

ENSRNOP00000006841 ⟸ ENSRNOT00000006841

RefSeq Acc Id:	XP_038948065 ⟸ XM_039092137
- Peptide Label:	isoform X3
- UniProtKB:	A0A096P6L4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948061 ⟸ XM_039092133
- Peptide Label:	isoform X1
- UniProtKB:	D3ZND0 (UniProtKB/Swiss-Prot), A0A096P6L4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948068 ⟸ XM_039092140
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038948066 ⟸ XM_039092138
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063129376 ⟸ XM_063273306
- Peptide Label:	isoform X2
- UniProtKB:	A0A096P6L4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129374 ⟸ XM_063273304
- Peptide Label:	isoform X2
- UniProtKB:	A0A096P6L4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129378 ⟸ XM_063273308
- Peptide Label:	isoform X2
- UniProtKB:	A0A096P6L4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129375 ⟸ XM_063273305
- Peptide Label:	isoform X2
- UniProtKB:	A0A096P6L4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099106 ⟸ ENSRNOT00000151963

Ensembl Acc Id:

ENSRNOP00000112232 ⟸ ENSRNOT00000161304

Protein Domains

UV-stimulated scaffold protein A C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZND0-F1-model_v2	AlphaFold	D3ZND0	1-720	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306371	AgrOrtholog
BioCyc Gene	G2FUF-15256	BioCyc
Ensembl Genes	ENSRNOG00000005122	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00000060138	Ensembl
Ensembl Transcript	ENSRNOT00000006841	ENTREZGENE
	ENSRNOT00000006841.6	UniProtKB/Swiss-Prot
	ENSRNOT00000151963	ENTREZGENE
	ENSRNOT00000161304	ENTREZGENE
Gene3D-CATH	1.25.40.90	UniProtKB/Swiss-Prot
InterPro	ENTH_VHS	UniProtKB/Swiss-Prot
	UVSSA	UniProtKB/Swiss-Prot
	UVSSA_C	UniProtKB/Swiss-Prot
	UVSSA_N_a-solenoid_rpt	UniProtKB/Swiss-Prot
KEGG Report	rno:314061	UniProtKB/Swiss-Prot
NCBI Gene	314061	ENTREZGENE
PANTHER	PTHR28670	UniProtKB/Swiss-Prot
	UV-STIMULATED SCAFFOLD PROTEIN A	UniProtKB/Swiss-Prot
Pfam	DUF2043	UniProtKB/Swiss-Prot
	UVSSA_N	UniProtKB/Swiss-Prot
PhenoGen	Uvssa	PhenoGen
PROSITE	ZF_UVSSA	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000005122	RatGTEx
	ENSRNOG00000060138	RatGTEx
Superfamily-SCOP	SSF48464	UniProtKB/Swiss-Prot
UniProt	A0A096P6L4	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0M093_RAT	UniProtKB/TrEMBL
	D3ZND0	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Uvssa	UV-stimulated scaffold protein A	LOC100912062	uncharacterized LOC100912062	Data merged from RGD:6488932	737654	PROVISIONAL
2012-10-10	Uvssa	UV-stimulated scaffold protein A	RGD1306371	similar to putative nuclear protein, with 2 coiled coil-4 domains, of eukaryotic origin (5I282)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	LOC100912062	uncharacterized LOC100912062			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	RGD1306371	similar to putative nuclear protein, with 2 coiled coil-4 domains, of eukaryotic origin (5I282)	RGD1306371_predicted	similar to putative nuclear protein, with 2 coiled coil-4 domains, of eukaryotic origin (5I282) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1306371_predicted	similar to putative nuclear protein, with 2 coiled coil-4 domains, of eukaryotic origin (5I282) (predicted)	LOC314061_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC314061_predicted	similar to putative nuclear protein, with 2 coiled coil-4 domains, of eukaryotic origin (5I282) (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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