Nav3 (neuron navigator 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: Nav3 (neuron navigator 3) Rattus norvegicus
Analyze
Symbol: Nav3
Name: neuron navigator 3
RGD ID: 1306259
Description: Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including negative regulation of cell migration; negative regulation of interleukin-2 production; and regulation of microtubule polymerization or depolymerization. Predicted to be located in microtubule and nuclear envelope. Predicted to colocalize with microtubule end. Human ortholog(s) of this gene implicated in opiate dependence. Orthologous to human NAV3 (neuron navigator 3); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC314814; pore membrane and/or filament interacting like protein 1; RGD1306259; similar to neuron navigator 3; steerin 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8746,938,577 - 47,726,839 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl746,940,670 - 47,504,893 (-)EnsemblGRCr8
mRatBN7.2745,052,206 - 45,840,471 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl745,054,296 - 45,840,698 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx746,971,991 - 47,300,504 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0749,175,089 - 49,503,591 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0748,952,850 - 49,281,357 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd748,975,883 - 49,301,575 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive749,854,690 - 50,180,373 (-)NCBILyon_Normotensive
Lyon_Hypertensive750,005,820 - 50,331,496 (-)NCBILyon_Hypertensive
F344_StmMcwi748,598,033 - 48,926,542 (-)NCBIF344_StmMcwi
Rnor_6.0752,164,805 - 52,508,145 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl752,165,233 - 52,404,774 (-)Ensemblrn6Rnor6.0
Rnor_5.0752,174,059 - 52,510,816 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4748,505,502 - 48,862,109 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera741,897,661 - 42,222,850 (-)NCBICelera
RGSC_v3.1748,681,551 - 48,882,272 (-)NCBI
Cytogenetic Map7q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gallic acid  (ISO)
genistein  (ISO)
ketamine  (EXP)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
nickel sulfate  (ISO)
okadaic acid  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
PD 0325901  (ISO)
pentanal  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thimerosal  (ISO)
thiram  (ISO)
trametinib  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Substance dependence low-density whole genome association study in two distinct American populations. Yu Y, etal., Hum Genet. 2008 Jun;123(5):495-506. doi: 10.1007/s00439-008-0501-0. Epub 2008 Apr 26.
Additional References at PubMed
PMID:12062803   PMID:16166283   PMID:25678558  


Genomics

Comparative Map Data
Nav3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8746,938,577 - 47,726,839 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl746,940,670 - 47,504,893 (-)EnsemblGRCr8
mRatBN7.2745,052,206 - 45,840,471 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl745,054,296 - 45,840,698 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx746,971,991 - 47,300,504 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0749,175,089 - 49,503,591 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0748,952,850 - 49,281,357 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd748,975,883 - 49,301,575 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive749,854,690 - 50,180,373 (-)NCBILyon_Normotensive
Lyon_Hypertensive750,005,820 - 50,331,496 (-)NCBILyon_Hypertensive
F344_StmMcwi748,598,033 - 48,926,542 (-)NCBIF344_StmMcwi
Rnor_6.0752,164,805 - 52,508,145 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl752,165,233 - 52,404,774 (-)Ensemblrn6Rnor6.0
Rnor_5.0752,174,059 - 52,510,816 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4748,505,502 - 48,862,109 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera741,897,661 - 42,222,850 (-)NCBICelera
RGSC_v3.1748,681,551 - 48,882,272 (-)NCBI
Cytogenetic Map7q21NCBI
NAV3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381277,571,862 - 78,213,010 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1277,324,641 - 78,213,010 (+)Ensemblhg38GRCh38
GRCh371278,224,674 - 78,606,790 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361276,749,200 - 77,130,921 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341276,727,664 - 77,108,408NCBI
Celera1277,890,812 - 78,272,363 (+)NCBICelera
Cytogenetic Map12q21.2NCBI
HuRef1275,278,625 - 75,660,456 (+)NCBIHuRef
CHM1_11278,191,333 - 78,573,061 (+)NCBICHM1_1
T2T-CHM13v2.01277,549,793 - 78,191,344 (+)NCBIT2T-CHM13v2.0
Nav3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910109,517,121 - 110,292,148 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10109,517,120 - 110,292,065 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3810109,681,260 - 110,455,722 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10109,681,259 - 110,456,204 (-)Ensemblmm10GRCm38
MGSCv3710109,120,495 - 109,437,275 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610109,120,495 - 109,437,275 (-)NCBIMGSCv36mm8
Celera10111,625,829 - 111,937,317 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1057.18NCBI
Nav3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540516,869,441 - 17,213,325 (+)Ensembl
ChiLan1.0NW_00495540516,428,643 - 17,213,253 (+)NCBIChiLan1.0ChiLan1.0
NAV3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21085,351,778 - 86,244,699 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11285,348,180 - 86,241,091 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01274,835,566 - 75,724,859 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11277,934,165 - 78,576,240 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1278,192,076 - 78,573,746 (+)EnsemblpanPan2panpan1.1
NAV3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11519,931,037 - 20,937,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1520,581,709 - 20,935,007 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1520,600,910 - 21,419,035 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01520,456,514 - 21,275,505 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1520,919,569 - 21,274,597 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11520,518,315 - 20,874,199 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01520,113,721 - 20,933,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01520,983,885 - 21,173,307 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nav3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494539,453,343 - 40,242,390 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365685,920,421 - 6,275,133 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365685,694,326 - 6,275,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAV3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5103,013,806 - 103,368,021 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.15103,013,798 - 103,863,222 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25108,177,031 - 108,232,183 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NAV3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11172,891,767 - 73,780,924 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037171,659,909 - 172,574,616 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nav3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475019,964,847 - 20,313,424 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475019,963,321 - 20,792,249 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Nav3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11187,871,442 - 188,400,352 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nav3
4927 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74299622658678836Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72862457565788017Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat

Markers in Region
D7Got33  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2745,308,441 - 45,308,655 (+)MAPPERmRatBN7.2
Rnor_6.0752,424,836 - 52,425,049NCBIRnor6.0
Rnor_5.0752,428,441 - 52,428,654UniSTSRnor5.0
RGSC_v3.4748,762,267 - 48,762,481RGDRGSC3.4
RGSC_v3.4748,762,268 - 48,762,481UniSTSRGSC3.4
Celera742,151,372 - 42,151,585UniSTS
RGSC_v3.1748,782,539 - 48,782,752RGD
RH 3.4 Map7380.91UniSTS
RH 3.4 Map7380.91RGD
RH 2.0 Map7353.6RGD
Cytogenetic Map7q21UniSTS
D12S1376E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2745,139,455 - 45,139,546 (+)MAPPERmRatBN7.2
Rnor_6.0752,258,643 - 52,258,733NCBIRnor6.0
Rnor_5.0752,262,833 - 52,262,923UniSTSRnor5.0
RGSC_v3.4748,591,401 - 48,591,491UniSTSRGSC3.4
Celera741,982,145 - 41,982,235UniSTS
Cytogenetic Map7q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 40 59 6 295 140 11 144 72 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001439506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000082100   ⟹   ENSRNOP00000070987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl746,940,670 - 47,278,625 (-)Ensembl
mRatBN7.2 Ensembl745,054,296 - 45,392,259 (-)Ensembl
Rnor_6.0 Ensembl752,165,233 - 52,404,774 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097268   ⟹   ENSRNOP00000079901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl746,940,670 - 47,504,893 (-)Ensembl
mRatBN7.2 Ensembl745,054,296 - 45,840,698 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108591   ⟹   ENSRNOP00000078833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl746,940,670 - 47,278,625 (-)Ensembl
mRatBN7.2 Ensembl745,054,296 - 45,840,698 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113032   ⟹   ENSRNOP00000091110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl746,940,670 - 47,427,832 (-)Ensembl
mRatBN7.2 Ensembl745,054,296 - 45,840,698 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114741   ⟹   ENSRNOP00000084644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl746,940,670 - 47,094,774 (-)Ensembl
mRatBN7.2 Ensembl745,054,296 - 45,208,664 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119133   ⟹   ENSRNOP00000096716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl746,940,670 - 47,278,625 (-)Ensembl
mRatBN7.2 Ensembl745,054,296 - 45,392,259 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119636   ⟹   ENSRNOP00000095548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl746,940,670 - 47,278,625 (-)Ensembl
mRatBN7.2 Ensembl745,054,296 - 45,392,259 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000171265   ⟹   ENSRNOP00000107059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl746,940,670 - 47,278,625 (-)Ensembl
RefSeq Acc Id: NM_001191782   ⟹   NP_001178711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,940,670 - 47,278,625 (-)NCBI
mRatBN7.2745,054,296 - 45,392,259 (-)NCBI
Dahl_SR_JrHsd748,975,883 - 49,301,575 (-)NCBI
Lyon_Normotensive749,854,690 - 50,180,373 (-)NCBI
Lyon_Hypertensive750,005,820 - 50,331,496 (-)NCBI
F344_StmMcwi748,598,033 - 48,926,542 (-)NCBI
Rnor_6.0752,164,805 - 52,508,145 (-)NCBI
Rnor_5.0752,174,059 - 52,510,816 (-)NCBI
Celera741,897,661 - 42,222,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079109   ⟹   XP_038935037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,281,090 (-)NCBI
mRatBN7.2745,052,206 - 45,394,696 (-)NCBI
RefSeq Acc Id: XM_039079110   ⟹   XP_038935038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,281,090 (-)NCBI
mRatBN7.2745,052,206 - 45,394,696 (-)NCBI
RefSeq Acc Id: XM_039079111   ⟹   XP_038935039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,280,088 (-)NCBI
mRatBN7.2745,052,206 - 45,394,694 (-)NCBI
RefSeq Acc Id: XM_039079112   ⟹   XP_038935040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,281,090 (-)NCBI
mRatBN7.2745,052,206 - 45,394,696 (-)NCBI
RefSeq Acc Id: XM_039079113   ⟹   XP_038935041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,281,089 (-)NCBI
mRatBN7.2745,052,206 - 45,394,696 (-)NCBI
RefSeq Acc Id: XM_039079114   ⟹   XP_038935042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,726,839 (-)NCBI
mRatBN7.2745,052,206 - 45,840,471 (-)NCBI
RefSeq Acc Id: XM_039079115   ⟹   XP_038935043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,726,839 (-)NCBI
mRatBN7.2745,052,206 - 45,840,471 (-)NCBI
RefSeq Acc Id: XM_039079116   ⟹   XP_038935044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,222,236 (-)NCBI
mRatBN7.2745,052,206 - 45,335,873 (-)NCBI
RefSeq Acc Id: XM_039079117   ⟹   XP_038935045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,205,438 (-)NCBI
mRatBN7.2745,052,206 - 45,319,051 (-)NCBI
RefSeq Acc Id: XM_039079118   ⟹   XP_038935046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,278,360 (-)NCBI
mRatBN7.2745,052,206 - 45,391,982 (-)NCBI
RefSeq Acc Id: XM_039079119   ⟹   XP_038935047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,104,195 (-)NCBI
mRatBN7.2745,052,206 - 45,214,897 (-)NCBI
RefSeq Acc Id: XM_063263475   ⟹   XP_063119545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,726,839 (-)NCBI
RefSeq Acc Id: XM_063263477   ⟹   XP_063119547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,726,839 (-)NCBI
RefSeq Acc Id: XM_063263478   ⟹   XP_063119548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,104,195 (-)NCBI
RefSeq Acc Id: XM_063263479   ⟹   XP_063119549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8746,938,577 - 47,104,194 (-)NCBI
RefSeq Acc Id: NP_001178711   ⟸   NM_001191782
- Sequence:
Ensembl Acc Id: ENSRNOP00000070987   ⟸   ENSRNOT00000082100
RefSeq Acc Id: XP_038935043   ⟸   XM_039079115
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AFJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935042   ⟸   XM_039079114
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AFJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935038   ⟸   XM_039079110
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ANV3 (UniProtKB/TrEMBL),   A0A8I6AR69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935037   ⟸   XM_039079109
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ANV3 (UniProtKB/TrEMBL),   A0A8I6AR69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935041   ⟸   XM_039079113
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JZB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935040   ⟸   XM_039079112
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AR69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935039   ⟸   XM_039079111
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038935046   ⟸   XM_039079118
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZNK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935044   ⟸   XM_039079116
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZNK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935045   ⟸   XM_039079117
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZNK3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935047   ⟸   XM_039079119
- Peptide Label: isoform X10
- UniProtKB: A6IGE3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000078833   ⟸   ENSRNOT00000108591
Ensembl Acc Id: ENSRNOP00000091110   ⟸   ENSRNOT00000113032
Ensembl Acc Id: ENSRNOP00000084644   ⟸   ENSRNOT00000114741
Ensembl Acc Id: ENSRNOP00000096716   ⟸   ENSRNOT00000119133
Ensembl Acc Id: ENSRNOP00000095548   ⟸   ENSRNOT00000119636
Ensembl Acc Id: ENSRNOP00000079901   ⟸   ENSRNOT00000097268
RefSeq Acc Id: XP_063119545   ⟸   XM_063263475
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AFJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119547   ⟸   XM_063263477
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZLL1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119548   ⟸   XM_063263478
- Peptide Label: isoform X11
- UniProtKB: A6IGE3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119549   ⟸   XM_063263479
- Peptide Label: isoform X12
- UniProtKB: A0A8I6A0K3 (UniProtKB/TrEMBL),   A6IGE3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000107059   ⟸   ENSRNOT00000171265
Protein Domains
AAA+ ATPase   Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZB7-F1-model_v2 AlphaFold A0A0G2JZB7 1-2254 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695184
Promoter ID:EPDNEW_R5709
Type:multiple initiation site
Name:Nav3_1
Description:neuron navigator 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0752,404,797 - 52,404,857EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306259 AgrOrtholog
BioCyc Gene G2FUF-34147 BioCyc
Ensembl Genes ENSRNOG00000052157 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082100.3 UniProtKB/TrEMBL
  ENSRNOT00000097268 ENTREZGENE
  ENSRNOT00000097268.2 UniProtKB/TrEMBL
  ENSRNOT00000108591.2 UniProtKB/TrEMBL
  ENSRNOT00000113032.2 UniProtKB/TrEMBL
  ENSRNOT00000114741 ENTREZGENE
  ENSRNOT00000114741.2 UniProtKB/TrEMBL
  ENSRNOT00000119133.2 UniProtKB/TrEMBL
  ENSRNOT00000119636 ENTREZGENE
  ENSRNOT00000119636.2 UniProtKB/TrEMBL
  ENSRNOT00000171265 ENTREZGENE
  ENSRNOT00000171265.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  Calponin-like_dom_sf UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CortBP2_NAV1-like_AAA_lid UniProtKB/TrEMBL
  Nav/unc-53 UniProtKB/TrEMBL
  NAV1-like_ubiquitin-like UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:314814 UniProtKB/TrEMBL
NCBI Gene 314814 ENTREZGENE
PANTHER NEURON NAVIGATOR 3 UniProtKB/TrEMBL
  PTHR12784 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  AAA_lid_NAV1 UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
  Ubiquitin_6 UniProtKB/TrEMBL
PhenoGen Nav3 PhenoGen
PROSITE PS50021 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000052157 RatGTEx
SMART AAA UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2JZB7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZLL1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNK3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0K3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ANV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AR69 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L9H1_RAT UniProtKB/TrEMBL
  A6IGE3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Nav3  neuron navigator 3  RGD1306259_predicted  similar to neuron navigator 3; pore membrane and/or filament interacting like protein 1; steerin 3 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1306259_predicted  similar to neuron navigator 3; pore membrane and/or filament interacting like protein 1; steerin 3 (predicted)  LOC314814_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC314814_predicted  similar to neuron navigator 3; pore membrane and/or filament interacting like protein 1; steerin 3 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL