NAV3 (neuron navigator 3) - Rat Genome Database

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Gene: NAV3 (neuron navigator 3) Pan paniscus
Analyze
Symbol: NAV3
Name: neuron navigator 3
RGD ID: 11817397
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); microtubule binding (inferred); INVOLVED IN negative regulation of cell migration (inferred); negative regulation of interleukin-2 production (inferred); negative regulation of microtubule depolymerization (inferred); ASSOCIATED WITH autistic disorder (ortholog); Cardiac Arrhythmias (ortholog); genetic disease (ortholog); FOUND IN nuclear envelope (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21085,351,778 - 86,244,699 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11285,348,180 - 86,241,091 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01274,835,566 - 75,724,859 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11277,934,165 - 78,576,240 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1278,192,076 - 78,573,746 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NAV3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21085,351,778 - 86,244,699 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11285,348,180 - 86,241,091 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01274,835,566 - 75,724,859 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11277,934,165 - 78,576,240 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1278,192,076 - 78,573,746 (+)Ensemblpanpan1.1panPan2
NAV3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381277,571,862 - 78,213,010 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1277,324,641 - 78,213,010 (+)EnsemblGRCh38hg38GRCh38
GRCh371278,224,674 - 78,606,790 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361276,749,200 - 77,130,921 (+)NCBINCBI36Build 36hg18NCBI36
Build 341276,727,664 - 77,108,408NCBI
Celera1277,890,812 - 78,272,363 (+)NCBICelera
Cytogenetic Map12q21.2NCBI
HuRef1275,278,625 - 75,660,456 (+)NCBIHuRef
CHM1_11278,191,333 - 78,573,061 (+)NCBICHM1_1
T2T-CHM13v2.01277,549,793 - 78,191,344 (+)NCBIT2T-CHM13v2.0
Nav3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910109,517,121 - 110,292,148 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10109,517,120 - 110,292,065 (-)EnsemblGRCm39 Ensembl
GRCm3810109,681,260 - 110,455,722 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10109,681,259 - 110,456,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710109,120,495 - 109,437,275 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610109,120,495 - 109,437,275 (-)NCBIMGSCv36mm8
Celera10111,625,829 - 111,937,317 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1057.18NCBI
Nav3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8746,938,577 - 47,726,839 (-)NCBIGRCr8
mRatBN7.2745,052,206 - 45,840,471 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl745,054,296 - 45,840,698 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx746,971,991 - 47,300,504 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0749,175,089 - 49,503,591 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0748,952,850 - 49,281,357 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0752,164,805 - 52,508,145 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl752,165,233 - 52,404,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0752,174,059 - 52,510,816 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4748,505,502 - 48,862,109 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1748,681,551 - 48,882,272 (-)NCBI
Celera741,897,661 - 42,222,850 (-)NCBICelera
Cytogenetic Map7q21NCBI
Nav3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540516,869,441 - 17,213,325 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540516,428,643 - 17,213,253 (+)NCBIChiLan1.0ChiLan1.0
NAV3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11519,931,037 - 20,937,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1520,581,709 - 20,935,007 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1520,600,910 - 21,419,035 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01520,456,514 - 21,275,505 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1520,919,569 - 21,274,597 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11520,518,315 - 20,874,199 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01520,113,721 - 20,933,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01520,983,885 - 21,173,307 (+)NCBIUU_Cfam_GSD_1.0
Nav3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494539,453,343 - 40,242,390 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365685,920,421 - 6,275,133 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365685,694,326 - 6,275,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAV3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5103,013,806 - 103,368,021 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15103,013,798 - 103,863,222 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25108,177,031 - 108,232,183 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NAV3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11172,891,767 - 73,780,924 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037171,659,909 - 172,574,616 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nav3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475019,964,847 - 20,313,424 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475019,963,321 - 20,792,249 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008958338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034936264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034936265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034936266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034936267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034936268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055095926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055095927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055095928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055095929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055095930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055095931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063593552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063593553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063593554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063593555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000048875   ⟹   ENSPPAP00000026043
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1278,192,076 - 78,573,746 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000048876   ⟹   ENSPPAP00000026044
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1278,192,076 - 78,573,746 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000048877   ⟹   ENSPPAP00000026045
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1278,301,085 - 78,573,746 (+)Ensembl
RefSeq Acc Id: XM_008958338   ⟹   XP_008956586
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,351,778 - 86,244,699 (+)NCBI
NHGRI_mPanPan11285,348,180 - 86,241,091 (+)NCBI
Mhudiblu_PPA_v01274,835,566 - 75,724,859 (+)NCBI
PanPan1.11277,934,165 - 78,576,240 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034936264   ⟹   XP_034792155
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,833,975 - 86,244,699 (+)NCBI
NHGRI_mPanPan11285,856,151 - 86,241,091 (+)NCBI
Mhudiblu_PPA_v01275,339,999 - 75,724,859 (+)NCBI
RefSeq Acc Id: XM_034936265   ⟹   XP_034792156
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,833,975 - 86,244,699 (+)NCBI
NHGRI_mPanPan11285,856,152 - 86,241,091 (+)NCBI
Mhudiblu_PPA_v01275,340,000 - 75,724,859 (+)NCBI
RefSeq Acc Id: XM_034936266   ⟹   XP_034792157
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,833,975 - 86,244,699 (+)NCBI
NHGRI_mPanPan11285,856,151 - 86,241,091 (+)NCBI
Mhudiblu_PPA_v01275,340,000 - 75,724,859 (+)NCBI
RefSeq Acc Id: XM_034936268   ⟹   XP_034792159
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21086,052,155 - 86,244,699 (+)NCBI
NHGRI_mPanPan11286,060,023 - 86,241,091 (+)NCBI
Mhudiblu_PPA_v01275,545,779 - 75,724,859 (+)NCBI
RefSeq Acc Id: XM_055095926   ⟹   XP_054951901
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,833,975 - 86,244,699 (+)NCBI
NHGRI_mPanPan11285,856,151 - 86,241,091 (+)NCBI
RefSeq Acc Id: XM_055095927   ⟹   XP_054951902
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,833,975 - 86,244,699 (+)NCBI
NHGRI_mPanPan11285,856,152 - 86,241,091 (+)NCBI
RefSeq Acc Id: XM_055095928   ⟹   XP_054951903
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,833,975 - 86,244,699 (+)NCBI
NHGRI_mPanPan11285,856,151 - 86,241,091 (+)NCBI
RefSeq Acc Id: XM_055095929   ⟹   XP_054951904
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,833,975 - 86,244,699 (+)NCBI
NHGRI_mPanPan11285,856,152 - 86,241,091 (+)NCBI
RefSeq Acc Id: XM_055095930   ⟹   XP_054951905
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,833,975 - 86,244,699 (+)NCBI
NHGRI_mPanPan11285,856,152 - 86,241,091 (+)NCBI
RefSeq Acc Id: XM_055095931   ⟹   XP_054951906
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,969,408 - 86,244,699 (+)NCBI
NHGRI_mPanPan11285,965,800 - 86,241,091 (+)NCBI
RefSeq Acc Id: XM_063593552   ⟹   XP_063449622
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,351,779 - 86,244,699 (+)NCBI
RefSeq Acc Id: XM_063593553   ⟹   XP_063449623
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,351,778 - 86,244,699 (+)NCBI
RefSeq Acc Id: XM_063593554   ⟹   XP_063449624
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,351,779 - 86,244,699 (+)NCBI
RefSeq Acc Id: XM_063593555   ⟹   XP_063449625
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21085,833,975 - 86,244,699 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008956586   ⟸   XM_008958338
- Peptide Label: isoform X7
- UniProtKB: A0A2R9BGB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034792155   ⟸   XM_034936264
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B8W6 (UniProtKB/TrEMBL),   A0A2R9B8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034792156   ⟸   XM_034936265
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034792157   ⟸   XM_034936266
- Peptide Label: isoform X11
- UniProtKB: A0A2R9B8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034792159   ⟸   XM_034936268
- Peptide Label: isoform X15
RefSeq Acc Id: ENSPPAP00000026043   ⟸   ENSPPAT00000048875
RefSeq Acc Id: ENSPPAP00000026044   ⟸   ENSPPAT00000048876
RefSeq Acc Id: ENSPPAP00000026045   ⟸   ENSPPAT00000048877
RefSeq Acc Id: XP_054951901   ⟸   XM_055095926
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054951903   ⟸   XM_055095928
- Peptide Label: isoform X5
- UniProtKB: A0A2R9B8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054951902   ⟸   XM_055095927
- Peptide Label: isoform X4
- UniProtKB: A0A2R9B8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054951905   ⟸   XM_055095930
- Peptide Label: isoform X12
- UniProtKB: A0A2R9B8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054951904   ⟸   XM_055095929
- Peptide Label: isoform X6
- UniProtKB: A0A2R9B8W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054951906   ⟸   XM_055095931
- Peptide Label: isoform X14
- UniProtKB: A0A2R9BGB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063449623   ⟸   XM_063593553
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063449622   ⟸   XM_063593552
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063449624   ⟸   XM_063593554
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063449625   ⟸   XM_063593555
- Peptide Label: isoform X13
Protein Domains
Calponin-homology (CH)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036134 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048875.1 UniProtKB/TrEMBL
  ENSPPAT00000048876.1 UniProtKB/TrEMBL
  ENSPPAT00000048877.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/TrEMBL
  Nav/unc-53 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene NAV3 ENTREZGENE
PANTHER NEURON NAVIGATOR 3 UniProtKB/TrEMBL
  PTHR12784 UniProtKB/TrEMBL
Pfam AAA UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PROSITE PS50021 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A2R9B8W2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B8W6 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BGB4 ENTREZGENE, UniProtKB/TrEMBL