Nav3 (neuron navigator 3) - Rat Genome Database

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Gene: Nav3 (neuron navigator 3) Mus musculus
Analyze
Symbol: Nav3
Name: neuron navigator 3
RGD ID: 1621252
MGI Page MGI
Description: Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including negative regulation of cell migration; negative regulation of interleukin-2 production; and regulation of microtubule polymerization or depolymerization. Located in nuclear envelope. Is expressed in central nervous system; liver; lung; notochord; and retina layer. Human ortholog(s) of this gene implicated in opiate dependence. Orthologous to human NAV3 (neuron navigator 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4732483H20Rik; 9630020C08Rik; mKIAA0938; POM; POMFIL1; Pomfil1p; pore membrane and/or filament-interacting-like protein 1; steerin 3; unc53H; unc53H3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910109,517,121 - 110,292,148 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10109,517,120 - 110,292,065 (-)EnsemblGRCm39 Ensembl
GRCm3810109,681,260 - 110,455,722 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10109,681,259 - 110,456,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710109,120,495 - 109,437,275 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610109,120,495 - 109,437,275 (-)NCBIMGSCv36mm8
Celera10111,625,829 - 111,937,317 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1057.18NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,1-dichloroethene  (EXP)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gallic acid  (ISO)
genistein  (EXP)
ketamine  (ISO)
lipopolysaccharide  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
nickel sulfate  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
PD 0325901  (ISO)
pentanal  (ISO)
potassium dichromate  (EXP)
progesterone  (ISO)
propanal  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sotorasib  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thimerosal  (ISO)
trametinib  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Substance dependence low-density whole genome association study in two distinct American populations. Yu Y, etal., Hum Genet. 2008 Jun;123(5):495-506. doi: 10.1007/s00439-008-0501-0. Epub 2008 Apr 26.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12062803   PMID:12466851   PMID:12477932   PMID:12693553   PMID:15158073   PMID:15226823  
PMID:15618518   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18287559   PMID:21565611   PMID:21677750   PMID:21873635   PMID:22008794   PMID:31040226   PMID:32325033  
PMID:32554809   PMID:36417873   PMID:38187761  


Genomics

Comparative Map Data
Nav3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910109,517,121 - 110,292,148 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10109,517,120 - 110,292,065 (-)EnsemblGRCm39 Ensembl
GRCm3810109,681,260 - 110,455,722 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10109,681,259 - 110,456,204 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710109,120,495 - 109,437,275 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610109,120,495 - 109,437,275 (-)NCBIMGSCv36mm8
Celera10111,625,829 - 111,937,317 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1057.18NCBI
NAV3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381277,571,862 - 78,213,010 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1277,324,641 - 78,213,010 (+)EnsemblGRCh38hg38GRCh38
GRCh371278,224,674 - 78,606,790 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361276,749,200 - 77,130,921 (+)NCBINCBI36Build 36hg18NCBI36
Build 341276,727,664 - 77,108,408NCBI
Celera1277,890,812 - 78,272,363 (+)NCBICelera
Cytogenetic Map12q21.2NCBI
HuRef1275,278,625 - 75,660,456 (+)NCBIHuRef
CHM1_11278,191,333 - 78,573,061 (+)NCBICHM1_1
T2T-CHM13v2.01277,549,793 - 78,191,344 (+)NCBIT2T-CHM13v2.0
Nav3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8746,938,577 - 47,726,839 (-)NCBIGRCr8
mRatBN7.2745,052,206 - 45,840,471 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl745,054,296 - 45,840,698 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx746,971,991 - 47,300,504 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0749,175,089 - 49,503,591 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0748,952,850 - 49,281,357 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0752,164,805 - 52,508,145 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl752,165,233 - 52,404,774 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0752,174,059 - 52,510,816 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4748,505,502 - 48,862,109 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1748,681,551 - 48,882,272 (-)NCBI
Celera741,897,661 - 42,222,850 (-)NCBICelera
Cytogenetic Map7q21NCBI
Nav3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540516,869,441 - 17,213,325 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540516,428,643 - 17,213,253 (+)NCBIChiLan1.0ChiLan1.0
NAV3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21085,351,778 - 86,244,699 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11285,348,180 - 86,241,091 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01274,835,566 - 75,724,859 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11277,934,165 - 78,576,240 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1278,192,076 - 78,573,746 (+)Ensemblpanpan1.1panPan2
NAV3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11519,931,037 - 20,937,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1520,581,709 - 20,935,007 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1520,600,910 - 21,419,035 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01520,456,514 - 21,275,505 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1520,919,569 - 21,274,597 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11520,518,315 - 20,874,199 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01520,113,721 - 20,933,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01520,983,885 - 21,173,307 (+)NCBIUU_Cfam_GSD_1.0
Nav3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494539,453,343 - 40,242,390 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365685,920,421 - 6,275,133 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365685,694,326 - 6,275,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAV3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5103,013,806 - 103,368,021 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15103,013,798 - 103,863,222 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25108,177,031 - 108,232,183 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NAV3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11172,891,767 - 73,780,924 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037171,659,909 - 172,574,616 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nav3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475019,964,847 - 20,313,424 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475019,963,321 - 20,792,249 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nav3
27976 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1619
Count of miRNA genes:651
Interacting mature miRNAs:801
Transcripts:ENSMUST00000032719, ENSMUST00000160159, ENSMUST00000161223, ENSMUST00000161582, ENSMUST00000161798, ENSMUST00000163071
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
13208554Lgth11_mbody length 11 (mouse)1090835862120835905Mouse
4142074Tmevp2_mTheiler's murine encephalomyelitis virus persistence 2 (mouse)Not determined92729941111568319Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097217101130530862Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097217101130530862Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397217101130530862Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097217101130530862Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097535905130530862Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97758644130530862Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099220635130530862Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099220635130530862Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099220635130530862Mouse
11059552Lmr32c_mleishmaniasis resistance 32c (mouse)1099309418116220862Mouse
11059544Lmr32_mleishmaniasis resistance 32 (mouse)1099309418116220862Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10100986516130530862Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10100986516130530862Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101497164130530862Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101497164130530862Mouse
26884388Skwq7_mskull length QTL 7, 10 week (mouse)10101735861113735905Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102506908130530862Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102735861123235905Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10102847852130530862Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10102902508130530862Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103243727130530862Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104110021130530862Mouse
14746996Manh69_mmandible shape 69 (mouse)10104763638130530862Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105041304130530862Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105041304130530862Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105041304130530862Mouse
4141269Ipng2_mimprinted postnatal growth 2 (mouse)Not determined105088254118497353Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105179713130530862Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105179713130530862Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105179713130530862Mouse
4142089Obrq9_mobesity resistance QTL 9 (mouse)Not determined108515907130530862Mouse
4141153Ltgq2_mliver triglyceride QTL 2 (mouse)Not determined108515907130530862Mouse
11041664Lmr25_mleishmaniasis resistance 25 (mouse)10108575094130530862Mouse
11039496Ltpr5b_mLeishmania tropica response 5b (mouse)10108575094130530862Mouse
11049570Lmr25b_mleishmaniasis resistance 25b (mouse)10108575094130530862Mouse
11049563Lmr25a_mleishmaniasis resistance 25a (mouse)10108575094130530862Mouse
27226722Tibw7_mtibia width 7, proximal, 16 week (mouse)10108635861125435869Mouse
27095902Scvln11_msacral vertebrae length 2, 10 week (mouse)10110035861125435869Mouse

Markers in Region
UniSTS:236455  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810109,681,429 - 109,681,643UniSTSGRCm38
MGSCv3710109,118,485 - 109,118,699UniSTSGRCm37
Celera10111,623,819 - 111,624,033UniSTS
Cytogenetic Map10D1UniSTS
D12S1376E  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810109,764,697 - 109,764,787UniSTSGRCm38
MGSCv3710109,201,753 - 109,201,843UniSTSGRCm37
Celera10111,706,949 - 111,707,039UniSTS
Cytogenetic Map10D1UniSTS
D19S653E  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810109,681,658 - 109,681,737UniSTSGRCm38
MGSCv3710109,118,714 - 109,118,793UniSTSGRCm37
Celera10111,624,048 - 111,624,127UniSTS
Cytogenetic Map10D1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001081035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001368815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC100120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC122011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC123812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC129336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC147240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC147615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX034567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000032719   ⟹   ENSMUSP00000032719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10109,517,120 - 109,836,080 (-)Ensembl
GRCm38.p6 Ensembl10109,681,259 - 110,000,219 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160159
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10109,734,964 - 110,292,065 (-)Ensembl
GRCm38.p6 Ensembl10109,899,103 - 110,456,204 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161223
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10109,550,163 - 109,559,662 (-)Ensembl
GRCm38.p6 Ensembl10109,714,302 - 109,723,801 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161582
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10109,518,521 - 109,659,446 (-)Ensembl
GRCm38.p6 Ensembl10109,682,660 - 109,823,585 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161798
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10109,716,494 - 109,739,884 (-)Ensembl
GRCm38.p6 Ensembl10109,880,633 - 109,904,023 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10109,590,993 - 109,600,701 (-)Ensembl
GRCm38.p6 Ensembl10109,755,132 - 109,764,840 (-)Ensembl
RefSeq Acc Id: ENSMUST00000238286   ⟹   ENSMUSP00000158790
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10109,519,006 - 109,669,082 (-)Ensembl
GRCm38.p6 Ensembl10109,683,145 - 109,833,221 (-)Ensembl
RefSeq Acc Id: ENSMUST00000239301   ⟹   ENSMUSP00000159239
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10109,517,120 - 110,292,065 (-)Ensembl
GRCm38.p6 Ensembl10109,681,259 - 110,456,204 (-)Ensembl
RefSeq Acc Id: NM_001081035   ⟹   NP_001074504
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,121 - 109,836,251 (-)NCBI
GRCm3810109,681,260 - 110,000,390 (-)NCBI
MGSCv3710109,120,495 - 109,437,275 (-)RGD
Celera10111,625,829 - 111,937,317 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001368815   ⟹   NP_001355744
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,121 - 109,836,251 (-)NCBI
GRCm3810109,681,260 - 110,000,390 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513676   ⟹   XP_006513739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,144 - 109,836,281 (-)NCBI
GRCm3810109,681,573 - 110,000,420 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513677   ⟹   XP_006513740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,144 - 109,836,246 (-)NCBI
GRCm3810109,681,573 - 110,000,389 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513679   ⟹   XP_006513742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,144 - 109,836,281 (-)NCBI
GRCm3810109,681,573 - 110,000,420 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513680   ⟹   XP_006513743
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,144 - 109,836,281 (-)NCBI
GRCm3810109,681,573 - 110,000,420 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513681   ⟹   XP_006513744
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,144 - 109,669,801 (-)NCBI
GRCm3810109,681,573 - 109,833,531 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313945   ⟹   XP_017169434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,434 - 109,836,281 (-)NCBI
GRCm3810109,681,573 - 110,000,420 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313946   ⟹   XP_017169435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,434 - 110,292,148 (-)NCBI
GRCm3810109,681,573 - 110,455,722 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017313948   ⟹   XP_017169437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,144 - 109,669,801 (-)NCBI
GRCm3810109,681,573 - 109,833,531 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155787   ⟹   XP_036011680
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,144 - 110,240,425 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155788   ⟹   XP_036011681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,434 - 110,292,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155789   ⟹   XP_036011682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910109,517,434 - 109,826,156 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001074504   ⟸   NM_001081035
- Peptide Label: isoform 1
- UniProtKB: E9QMF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513740   ⟸   XM_006513677
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006513743   ⟸   XM_006513680
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006513742   ⟸   XM_006513679
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006513739   ⟸   XM_006513676
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006513744   ⟸   XM_006513681
- Peptide Label: isoform X9
- UniProtKB: A0A571BDN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169435   ⟸   XM_017313946
- Peptide Label: isoform X4
- UniProtKB: A0A668KM70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017169434   ⟸   XM_017313945
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017169437   ⟸   XM_017313948
- Peptide Label: isoform X10
- UniProtKB: A0A571BDN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001355744   ⟸   NM_001368815
- Peptide Label: isoform 2
- UniProtKB: Q80TN7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000032719   ⟸   ENSMUST00000032719
RefSeq Acc Id: ENSMUSP00000159239   ⟸   ENSMUST00000239301
RefSeq Acc Id: ENSMUSP00000158790   ⟸   ENSMUST00000238286
RefSeq Acc Id: XP_036011680   ⟸   XM_036155787
- Peptide Label: isoform X4
- UniProtKB: A0A668KM70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036011681   ⟸   XM_036155788
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036011682   ⟸   XM_036155789
- Peptide Label: isoform X6
Protein Domains
AAA+ ATPase   Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80TN7-F1-model_v2 AlphaFold Q80TN7 1-2359 view protein structure

Promoters
RGD ID:6846750
Promoter ID:MM_ACW:5961
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3
Transcripts:NAV3.FSEP07-UNSPLICED,   NAV3.HSEP07,   NAV3.MSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3610109,340,766 - 109,341,266 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2183703 AgrOrtholog
Ensembl Genes ENSMUSG00000020181 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032719 ENTREZGENE
  ENSMUST00000032719.15 UniProtKB/TrEMBL
  ENSMUST00000238286 ENTREZGENE
  ENSMUST00000238286.2 UniProtKB/TrEMBL
  ENSMUST00000239301 ENTREZGENE
  ENSMUST00000239301.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nav/unc-53 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:260315 UniProtKB/TrEMBL
MGD MGI:2183703 ENTREZGENE
NCBI Gene 260315 ENTREZGENE
PANTHER NEURON NAVIGATOR 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nav3 PhenoGen
PROSITE PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A571BDN3 ENTREZGENE, UniProtKB/TrEMBL
  A0A668KM70 ENTREZGENE, UniProtKB/TrEMBL
  E9QMF5 ENTREZGENE, UniProtKB/TrEMBL
  NAV3_MOUSE UniProtKB/Swiss-Prot
  Q3URM8_MOUSE UniProtKB/TrEMBL
  Q80TN7 ENTREZGENE