Psmd2 (proteasome 26S subunit ubiquitin receptor, non-ATPase 2) - Rat Genome Database

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Gene: Psmd2 (proteasome 26S subunit ubiquitin receptor, non-ATPase 2) Rattus norvegicus
Analyze
Symbol: Psmd2
Name: proteasome 26S subunit ubiquitin receptor, non-ATPase 2
RGD ID: 1305752
Description: Predicted to enable enzyme regulator activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in nucleus and proteasome storage granule. Orthologous to human PSMD2 (proteasome 26S subunit ubiquitin receptor, non-ATPase 2); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 26S proteasome non-ATPase regulatory subunit 2; LOC287984; MGC116280; proteasome (prosome, macropain) 26S subunit, non-ATPase, 2; proteasome 26S subunit, non-ATPase 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,752,761 - 93,763,388 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1193,752,763 - 93,763,388 (-)EnsemblGRCr8
mRatBN7.21180,248,364 - 80,258,991 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,248,364 - 80,259,043 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1188,971,063 - 88,981,690 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,624,481 - 81,635,108 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,685,546 - 80,696,173 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,934,098 - 83,944,725 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,934,087 - 83,944,763 (-)Ensemblrn6Rnor6.0
Rnor_5.01187,006,146 - 87,016,773 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41182,478,177 - 82,488,804 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1179,088,072 - 79,098,699 (-)NCBICelera
RGSC_v3.11182,535,765 - 82,546,399 (-)NCBI
Cytogenetic Map11q23NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
1H-pyrazole  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
allethrin  (EXP)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
azoxystrobin  (ISO)
Benoxacor  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP)
bisphenol AF  (ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cyhalothrin  (EXP)
cypermethrin  (EXP)
dexamethasone  (ISO)
diclofenac  (ISO)
elesclomol  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
finasteride  (EXP)
flutamide  (EXP)
FR900359  (ISO)
furfural  (ISO)
glyphosate  (ISO)
indometacin  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
lead(0)  (ISO)
leflunomide  (EXP)
methimazole  (EXP)
morphine  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
ochratoxin A  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
patulin  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
picoxystrobin  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
Propiverine  (EXP)
pyrethrins  (EXP)
quercetin  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium dichromate  (ISO)
sulfadimethoxine  (EXP)
Tanshinone I  (ISO)
thiram  (ISO)
trichloroethene  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
valdecoxib  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses. Sun C, etal., Science. 2023 May 26;380(6647):eadf2018. doi: 10.1126/science.adf2018. Epub 2023 May 26.
Additional References at PubMed
PMID:12477932   PMID:16857966   PMID:16973439   PMID:17323924   PMID:19946888   PMID:20458337   PMID:20498273   PMID:22120110   PMID:23106098   PMID:24625528   PMID:26316108   PMID:29476059  
PMID:30053369   PMID:31904090   PMID:32357304   PMID:33450132  


Genomics

Comparative Map Data
Psmd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,752,761 - 93,763,388 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1193,752,763 - 93,763,388 (-)EnsemblGRCr8
mRatBN7.21180,248,364 - 80,258,991 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,248,364 - 80,259,043 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1188,971,063 - 88,981,690 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,624,481 - 81,635,108 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,685,546 - 80,696,173 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,934,098 - 83,944,725 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,934,087 - 83,944,763 (-)Ensemblrn6Rnor6.0
Rnor_5.01187,006,146 - 87,016,773 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41182,478,177 - 82,488,804 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1179,088,072 - 79,098,699 (-)NCBICelera
RGSC_v3.11182,535,765 - 82,546,399 (-)NCBI
Cytogenetic Map11q23NCBI
PSMD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,299,241 - 184,309,050 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3184,299,157 - 184,309,054 (+)Ensemblhg38GRCh38
GRCh373184,017,029 - 184,026,838 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363185,499,716 - 185,509,534 (+)NCBIBuild 36Build 36hg18NCBI36
Build 343185,499,723 - 185,509,542NCBI
Celera3182,457,704 - 182,467,523 (+)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3181,423,849 - 181,433,806 (+)NCBIHuRef
CHM1_13183,981,343 - 183,991,300 (+)NCBICHM1_1
T2T-CHM13v2.03187,108,522 - 187,118,326 (+)NCBIT2T-CHM13v2.0
Psmd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,469,872 - 20,482,164 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1620,470,402 - 20,482,164 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381620,651,122 - 20,663,414 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,651,652 - 20,663,414 (+)Ensemblmm10GRCm38
MGSCv371620,651,725 - 20,663,487 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361620,565,238 - 20,576,957 (+)NCBIMGSCv36mm8
Celera1621,216,674 - 21,228,436 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.49NCBI
Psmd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542023,184,751 - 23,194,809 (-)Ensembl
ChiLan1.0NW_00495542023,184,914 - 23,194,809 (-)NCBIChiLan1.0ChiLan1.0
PSMD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22182,172,462 - 182,182,374 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13182,177,192 - 182,187,091 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03181,336,634 - 181,346,471 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13189,818,655 - 189,828,596 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3189,818,655 - 189,828,596 (+)EnsemblpanPan2panpan1.1
PSMD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13417,180,119 - 17,189,298 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3417,180,098 - 17,189,303 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3421,266,238 - 21,275,472 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03417,087,733 - 17,097,170 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3417,087,723 - 17,097,159 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13417,124,866 - 17,134,298 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03417,120,951 - 17,130,382 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03417,350,119 - 17,359,348 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Psmd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,479,115 - 119,488,470 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365785,570,817 - 5,580,617 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365785,570,969 - 5,580,334 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13122,187,466 - 122,199,400 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113122,187,500 - 122,199,397 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213131,627,272 - 131,639,168 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,111,127 - 5,121,159 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl155,110,989 - 5,121,099 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606313,888,809 - 13,899,029 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473072,286,324 - 72,297,465 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473072,286,625 - 72,297,415 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Psmd2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v145,476,680 - 5,487,449 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:216
Count of miRNA genes:156
Interacting mature miRNAs:171
Transcripts:ENSRNOT00000002358
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)119046178196556255Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)118295102896351019Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat

Markers in Region
T03659  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81193,752,985 - 93,753,347 (+)Marker Load Pipeline
mRatBN7.21180,248,588 - 80,248,950 (+)MAPPERmRatBN7.2
Rnor_6.01183,934,323 - 83,934,684NCBIRnor6.0
Rnor_5.01187,006,371 - 87,006,732UniSTSRnor5.0
RGSC_v3.41182,478,402 - 82,478,763UniSTSRGSC3.4
Celera1179,088,297 - 79,088,658UniSTS
Cytogenetic Map11q23UniSTS
BI277248  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,248,500 - 80,248,666 (+)MAPPERmRatBN7.2
Rnor_6.01183,934,235 - 83,934,400NCBIRnor6.0
Rnor_5.01187,006,283 - 87,006,448UniSTSRnor5.0
RGSC_v3.41182,478,314 - 82,478,479UniSTSRGSC3.4
Celera1179,088,209 - 79,088,374UniSTS
RH 3.4 Map11655.1UniSTS
Cytogenetic Map11q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000002358   ⟹   ENSRNOP00000002358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1193,752,763 - 93,763,388 (-)Ensembl
mRatBN7.2 Ensembl1180,248,364 - 80,259,043 (-)Ensembl
Rnor_6.0 Ensembl1183,934,087 - 83,944,763 (-)Ensembl
RefSeq Acc Id: NM_001031639   ⟹   NP_001026809
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,752,761 - 93,763,388 (-)NCBI
mRatBN7.21180,248,364 - 80,258,991 (-)NCBI
Rnor_6.01183,934,098 - 83,944,725 (-)NCBI
Rnor_5.01187,006,146 - 87,016,773 (-)NCBI
RGSC_v3.41182,478,177 - 82,488,804 (-)RGD
Celera1179,088,072 - 79,098,699 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001026809 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH99135 (Get FASTA)   NCBI Sequence Viewer  
  EDL78010 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000002358
  ENSRNOP00000002358.4
GenBank Protein Q4FZT9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001026809   ⟸   NM_001031639
- UniProtKB: Q4FZT9 (UniProtKB/Swiss-Prot),   A6JS97 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000002358   ⟸   ENSRNOT00000002358
Protein Domains
26S proteasome non-ATPase regulatory subunit RPN1 C-   RPN1 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4FZT9-F1-model_v2 AlphaFold Q4FZT9 1-908 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698272
Promoter ID:EPDNEW_R8797
Type:multiple initiation site
Name:Psmd2_1
Description:proteasome 26S subunit, non-ATPase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01183,944,746 - 83,944,806EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305752 AgrOrtholog
BioCyc Gene G2FUF-20749 BioCyc
Ensembl Genes ENSRNOG00000001719 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000002358 ENTREZGENE
  ENSRNOT00000002358.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7455692 IMAGE-MGC_LOAD
InterPro 26S_Psome_Rpn1 UniProtKB/Swiss-Prot
  ARM-like UniProtKB/Swiss-Prot
  ARM-type_fold UniProtKB/Swiss-Prot
  Proteasome/cyclosome_rpt UniProtKB/Swiss-Prot
  RPN1_C UniProtKB/Swiss-Prot
  RPN1_RPN2_N UniProtKB/Swiss-Prot
KEGG Report rno:287984 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116280 IMAGE-MGC_LOAD
NCBI Gene 287984 ENTREZGENE
PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT UniProtKB/Swiss-Prot
  26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 UniProtKB/Swiss-Prot
Pfam PC_rep UniProtKB/Swiss-Prot
  RPN1_C UniProtKB/Swiss-Prot
  RPN1_RPN2_N UniProtKB/Swiss-Prot
PhenoGen Psmd2 PhenoGen
PIRSF 26S_Psome_Rpn1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001719 RatGTEx
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
UniProt A6JS97 ENTREZGENE, UniProtKB/TrEMBL
  PSMD2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Psmd2  proteasome 26S subunit ubiquitin receptor, non-ATPase 2  Psmd2  proteasome 26S subunit, non-ATPase 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-08-19 Psmd2  proteasome 26S subunit, non-ATPase 2  Psmd2  proteasome (prosome, macropain) 26S subunit, non-ATPase, 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Psmd2  proteasome (prosome, macropain) 26S subunit, non-ATPase, 2  Psmd2_predicted  proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Psmd2_predicted  proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED