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Gene: Sh3glb1 (SH3 domain -containing GRB2-like endophilin B1) Rattus norvegicus

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Symbol:

Sh3glb1

Name:

SH3 domain -containing GRB2-like endophilin B1

RGD ID:

1304859

Description:

Predicted to enable several functions, including lysophosphatidic acid acyltransferase activity; phosphatidylinositol 3-kinase activator activity; and protein homodimerization activity. Involved in positive regulation of neurotrophin TRK receptor signaling pathway; regulation of cell morphogenesis; and regulation of early endosome to late endosome transport. Located in early endosome; neuronal cell body; and synaptic vesicle. Orthologous to human SH3GLB1 (SH3 domain containing GRB2 like, endophilin B1); PARTICIPATES IN mitochondria fission pathway; endocytosis pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

endophilin-B1; LOC292156; SH3 domain-containing GRB2-like protein B1; SH3-domain GRB2-like B1 (endophilin); SH3-domain GRB2-like endophilin B1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	236,411,194 - 236,445,225 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	236,410,436 - 236,445,140 (-)	Ensembl				GRCr8
mRatBN7.2	2	233,750,838 - 233,784,817 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	233,750,838 - 233,784,784 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	241,542,137 - 241,570,014 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	239,436,138 - 239,464,031 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	234,299,748 - 234,327,625 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	250,709,812 - 250,744,216 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	250,709,439 - 250,744,196 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	269,236,633 - 269,271,033 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	242,874,678 - 242,903,467 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	225,746,540 - 225,774,430 (-)	NCBI		Celera
RGSC_v3.1	2	242,861,417 - 242,890,207 (-)	NCBI
Cytogenetic Map	2	q44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

atazanavir sulfate (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbamazepine (ISO)

chenodeoxycholic acid (ISO)

cisplatin (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

deguelin (ISO)

deoxycholic acid (ISO)

diazinon (EXP)

dibutyl phthalate (EXP)

diclofenac (ISO)

dioxygen (ISO)

doxorubicin (ISO)

enniatin (EXP)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

flutamide (EXP)

folic acid (ISO)

glycochenodeoxycholic acid (ISO)

glycocholic acid (ISO)

glycodeoxycholic acid (ISO)

ivermectin (ISO)

leflunomide (ISO)

Mesaconitine (EXP)

methyl methanesulfonate (ISO)

nefazodone (ISO)

oxybenzone (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

piroxicam (ISO)

rac-lactic acid (ISO)

resveratrol (EXP)

rotenone (EXP)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

streptozocin (EXP)

succimer (ISO)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

thiram (ISO)

trichloroethene (EXP)

triclosan (ISO)

triphenyl phosphate (EXP,ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

'de novo' post-translational protein folding (ISO)

apoptotic process (IEA)

autophagic cell death (IEA,ISO)

cellular response to amino acid starvation (IEA,ISO)

cellular response to glucose starvation (IEA,ISO)

endocytosis (IBA)

membrane fission (IEA,ISO)

membrane organization (IBA)

mitochondrion organization (ISO)

negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator (ISO)

obsolete positive regulation of protein targeting to mitochondrion (ISO)

phosphatidic acid biosynthetic process (ISO)

phospholipid biosynthetic process (ISO)

positive regulation of autophagosome assembly (IEA,ISO)

positive regulation of autophagy (IEA,ISO)

positive regulation of dendrite extension (IMP)

positive regulation of dendrite morphogenesis (IMP)

positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator (ISO)

positive regulation of membrane tubulation (IEA,ISO)

positive regulation of neurotrophin TRK receptor signaling pathway (IMP)

positive regulation of protein localization to mitochondrion (ISO)

positive regulation of protein-containing complex assembly (IEA,ISO)

protein localization to vacuolar membrane (IEA,ISO)

receptor catabolic process (IEA,ISO)

regulation of cytokinesis (IEA,ISO)

regulation of early endosome to late endosome transport (IMP)

regulation of protein stability (ISO)

Cellular Component

autophagosome membrane (IEA,ISO)

cytoplasm (IEA,ISO)

cytoplasmic vesicle (IEA)

cytosol (IEA,ISO)

early endosome (IDA)

Golgi membrane (IEA)

membrane (IBA,IEA,ISO)

midbody (IEA,ISO)

mitochondrial outer membrane (IEA)

neuronal cell body (IDA)

protein-containing complex (IEA,ISO)

synaptic vesicle (IDA)

Molecular Function

fatty acid binding (IEA,ISO)

lipid binding (IEA)

lysophosphatidic acid acyltransferase activity (IEA,ISO)

phosphatidylinositol 3-kinase activator activity (IEA,ISO)

protein binding (IPI,ISO)

protein homodimerization activity (IEA,ISO)

protein-macromolecule adaptor activity (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

endocytosis pathway (IEA)

mitochondria fission pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Mitochondria dynamism: of shape, transport and cell migration.	da Silva AF, etal., Cell Mol Life Sci. 2014 Jun;71(12):2313-24. doi: 10.1007/s00018-014-1557-8. Epub 2014 Jan 18.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	The regulation of mitochondrial morphology: intricate mechanisms and dynamic machinery.	Palmer CS, etal., Cell Signal. 2011 Oct;23(10):1534-45. doi: 10.1016/j.cellsig.2011.05.021. Epub 2011 Jun 13.
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation
9.	Endophilin B1 as a novel regulator of nerve growth factor/ TrkA trafficking and neurite outgrowth.	Wan J, etal., J Neurosci. 2008 Sep 3;28(36):9002-12. doi: 10.1523/JNEUROSCI.0767-08.2008.
10.	Endophilins interact with Moloney murine leukemia virus Gag and modulate virion production.	Wang MQ, etal., J Biol. 2003;3(1):4. Epub 2003 Dec 4.

Additional References at PubMed

PMID:11161816	PMID:12456676	PMID:12477932	PMID:16227588	PMID:16606361	PMID:16763559	PMID:17437541	PMID:17891140	PMID:19074440	PMID:19805544	PMID:20562859	PMID:20643123
PMID:21068542	PMID:23376485	PMID:23414517	PMID:24270810	PMID:24523556	PMID:25002582	PMID:25416956	PMID:25468996	PMID:26253702	PMID:28131823

Genomics

Comparative Map Data

Sh3glb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	236,411,194 - 236,445,225 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	236,410,436 - 236,445,140 (-)	Ensembl				GRCr8
mRatBN7.2	2	233,750,838 - 233,784,817 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	233,750,838 - 233,784,784 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	241,542,137 - 241,570,014 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	239,436,138 - 239,464,031 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	234,299,748 - 234,327,625 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	250,709,812 - 250,744,216 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	250,709,439 - 250,744,196 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	269,236,633 - 269,271,033 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	242,874,678 - 242,903,467 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	225,746,540 - 225,774,430 (-)	NCBI		Celera
RGSC_v3.1	2	242,861,417 - 242,890,207 (-)	NCBI
Cytogenetic Map	2	q44	NCBI

SH3GLB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	86,704,576 - 86,748,184 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	86,704,520 - 86,748,184 (+)	Ensembl			hg38	GRCh38
GRCh37	1	87,170,259 - 87,213,867 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	86,942,845 - 86,986,455 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	86,882,524 - 86,921,290	NCBI
Celera	1	85,413,638 - 85,457,246 (+)	NCBI		Celera
Cytogenetic Map	1	p22.3	NCBI
HuRef	1	85,280,855 - 85,324,463 (+)	NCBI		HuRef
CHM1_1	1	87,285,087 - 87,328,713 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	86,544,605 - 86,588,211 (+)	NCBI		T2T-CHM13v2.0

Sh3glb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	144,389,426 - 144,426,186 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	144,389,439 - 144,426,096 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	144,683,665 - 144,720,408 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	144,683,678 - 144,720,335 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	144,351,808 - 144,383,287 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	144,626,230 - 144,657,709 (-)	NCBI		MGSCv36	mm8
Celera	3	151,130,849 - 151,162,252 (-)	NCBI		Celera
Cytogenetic Map	3	H2	NCBI
cM Map	3	69.0	NCBI

Sh3glb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	7,393,186 - 7,423,903 (-)	Ensembl
ChiLan1.0	NW_004955423	7,393,186 - 7,414,199 (-)	NCBI	ChiLan1.0	ChiLan1.0

SH3GLB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	140,227,422 - 140,266,517 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	139,378,255 - 139,421,980 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	119,224,304 - 119,267,986 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	88,077,401 - 88,121,056 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	88,077,420 - 88,121,056 (+)	Ensembl			panPan2	panpan1.1

SH3GLB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	61,439,414 - 61,471,414 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	61,439,415 - 61,462,087 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	64,153,405 - 64,186,410 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	61,979,099 - 62,012,117 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	61,974,692 - 62,011,837 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	61,512,632 - 61,545,627 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	61,475,720 - 61,508,706 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	61,974,409 - 62,007,415 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sh3glb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	97,341,464 - 97,372,308 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936732	2,067,204 - 2,097,631 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936732	2,066,848 - 2,097,947 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SH3GLB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	129,357,552 - 129,395,583 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	129,361,596 - 129,395,790 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	141,809,640 - 141,843,706 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SH3GLB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	46,707,556 - 46,746,785 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	46,707,910 - 46,746,735 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	71,094,700 - 71,138,519 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sh3glb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624742	10,845,333 - 10,883,705 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sh3glb1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	16,006,364 - 16,040,244 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sh3glb1
335 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	33
Count of miRNA genes:	31
Interacting mature miRNAs:	33
Transcripts:	ENSRNOT00000017770
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170656145	239614549	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	205135267	250135267	Rat
1598813	Memor9	Memory QTL 9	2.7		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	202029709	236904960	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	210956252	251712708	Rat
8693697	Alc36	Alcohol consumption QTL 36	2	0.592	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	2	219814164	239320906	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
1298075	Scl17	Serum cholesterol level QTL 17	3.4		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	214404877	251712708	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	204795005	249795005	Rat
7207484	Bss108	Bone structure and strength QTL 108	5.3		femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	2	214404877	251712708	Rat
2313073	Bmd75	Bone mineral density QTL 75	4.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	2	218051934	251712708	Rat
61398	Bp50	Blood pressure QTL 50	4.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	192287802	237287802	Rat
7207482	Bss107	Bone structure and strength QTL 107	7		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	2	214404877	251712708	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	196140964	251540988	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	205135267	250135267	Rat
1549836	Bss2	Bone structure and strength QTL 2	7.5		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	2	214404877	251712708	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	205135267	250135267	Rat
1331767	Hrtrt12	Heart rate QTL 12	3.373		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	221088977	243501206	Rat
2293833	Kiddil8	Kidney dilation QTL 8	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	220274283	249795005	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	203664411	248664411	Rat
7207490	Bss111	Bone structure and strength QTL 111	6.4		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	2	214404877	251712708	Rat
8693622	Alc26	Alcohol consumption QTL 26	2.4	0.667	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	2	223810546	243965570	Rat
61366	Iddm3	Insulin dependent diabetes mellitus QTL 3	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	192287802	237287802	Rat
2293844	Kiddil7	Kidney dilation QTL 7	3.5		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	220274283	249795005	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat

Markers in Region

RH128900

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	233,756,927 - 233,757,139 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	250,715,902 - 250,716,113	NCBI	Rnor6.0
Rnor_5.0	2	269,242,723 - 269,242,934	UniSTS	Rnor5.0
RGSC_v3.4	2	242,874,712 - 242,874,923	UniSTS	RGSC3.4
Celera	2	225,746,574 - 225,746,785	UniSTS
RH 3.4 Map	7	476.91	UniSTS
Cytogenetic Map	2	q44	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039101876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017770 ⟹ ENSRNOP00000017771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	236,410,436 - 236,445,140 (-)	Ensembl
mRatBN7.2 Ensembl	2	233,756,896 - 233,784,784 (-)	Ensembl
Rnor_6.0 Ensembl	2	250,715,868 - 250,744,196 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084337 ⟹ ENSRNOP00000074019

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	233,750,841 - 233,784,544 (-)	Ensembl
Rnor_6.0 Ensembl	2	250,709,439 - 250,743,960 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098552 ⟹ ENSRNOP00000092051

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	236,417,252 - 236,445,140 (-)	Ensembl
mRatBN7.2 Ensembl	2	233,756,896 - 233,784,784 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104475 ⟹ ENSRNOP00000093719

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	236,417,252 - 236,445,140 (-)	Ensembl
mRatBN7.2 Ensembl	2	233,756,896 - 233,784,784 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109147 ⟹ ENSRNOP00000078654

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	236,411,195 - 236,444,863 (-)	Ensembl
mRatBN7.2 Ensembl	2	233,750,838 - 233,784,536 (-)	Ensembl

RefSeq Acc Id:

NM_001011929 ⟹ NP_001011929

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	236,417,250 - 236,445,140 (-)	NCBI
mRatBN7.2	2	233,756,894 - 233,784,784 (-)	NCBI
Rnor_6.0	2	250,715,868 - 250,744,196 (-)	NCBI
Rnor_5.0	2	269,236,633 - 269,271,033 (-)	NCBI
RGSC_v3.4	2	242,874,678 - 242,903,467 (-)	RGD
Celera	2	225,746,540 - 225,774,430 (-)	RGD

Sequence:

show sequence

CCGCGGTCGCGCTGTCGCGGGGCGGCGGGGTGGGTTCCTTCGGATGCGACCTCCGTCCCGGTGG
CTCGCAGCTGCTCTGCGACGCGACAGGCCCGGCGCGTGAGCGGCGAGGCGCGCGCCGGCGCCGG
CCGCCTTCCCTCCCCCTCGCCACCTCCTCCGCCTCCCCCTCAGGAAACGACAGCTGCGCGGGGC
TGGCGCCGCCTCCCGCCACCTACCACGTCCGCCCGGCCGTCGCCCGGCGCCCCAGCCCGGCCGC
GGCGCTCCCCGCCTCTCCGCTAGCCCAGCCGGCGGCTCTGCCCGGTTGCCGCCCAGCATGAACA
TCATGGATTTCAACGTGAAGAAGCTGGCGGCCGACGCGGGCACTTTCCTCAGCCGGGCCGTGCA
GTTCACAGAGGAAAAGCTTGGCCAAGCAGAGAAGACAGAACTGGATGCTCACCTGGAAAATCTC
CTCAGCAAGGCGGAGTGCACCAAAGTGTGGACAGAGAAGATAATGAAGCAGACTGAGGTGCTGT
TGCAGCCAAATCCAAATGCCAGGATAGAAGAATTTGTTTATGAGAAACTGGACAGAAAAGCGCC
AAGTCGTATAAACAACCCAGAACTTTTGGGACAGTATATGATTGATGCAGGCACTGAGTTTGGC
CCAGGGACAGCTTATGGTAATGCCCTTATTAAATGTGGAGAAACACAGAAGCGAATTGGAACAG
CTGACAGAGAGCTGATTCAAACATCAGCCTTAAATTTCCTCACTCCTTTAAGAAACTTTATAGA
AGGGGATTACAAGACAATCGCAAAAGAAAGGAAGCTATTACAGAATAAGAGACTGGATTTGGAT
GCTGCAAAAACAAGACTAAAAAAGGCAAAAGCTGCAGAAACTAAAAGTTCATCTGAACAGGAAT
TAAGAATAACTCAAAGTGAATTTGATCGTCAGGCAGAGATTACCCGTCTTCTGCTGGAAGGAAT
CAGCAGTACACACGCCCATCATCTCCGCTGTCTGAATGACTTTGTAGAAGCCCAGATGACTTAC
TATGCACAATGTTACCAGTACATGTTAGACCTACAAAAACAACTGGGAAGTTTTCCATCCAATT
ATGTTTCTAACAACAATCAGACTTCTGGGACACCTGTGCCGTATACTTTGTCAAATACCATTGG
TCCTTCTGCTGTGGCTTCAACAGGTAGCCTGGTAATCACCTGTCCTCCTAACCTCAGTGACCTT
AAAGACTCCAGCAGCACCAGGAAGGCCAGGGTGCTGTACGATTATGACGCTGCCAACAGTACGG
AGCTGTCACTCCTGGCAGACGAGGTAATCACTGTGTTCAGTGTCGTTGGAATGGACTCCGACTG
GCTAATGGGGGAGAGAGGAAATCAGAAGGGCAAGGTGCCAATTACCTACTTAGAGCTTCTCAAT
TAATTCAGGGAGACCATGAGAGGTTGCCCATCATGACACCATATTTATATAAATAACTCTAAAG
CAGGTTTAAATACTTTCAATGTTAAAGTCACAAGAGACTGAAAAAGAAAAATTACAAGCCATCA
GAAACTGGCTGTTTGCCAATAAACCTGCATGGTTAATCCTTCATTACAGAATTTATGTTAGCGA
TTTCATGACAAGAATGTTTTCTTAAACAATTCTCTTTCTACTGAGGTTTCACTAACAAACAAGT
TCTACTTTTGAGTCCCAACTTAAAAACAAAAGGATTCTTTTCTACTGAATTTTTCATTAACGGC
GAGCTTTTTCTTTTATGCAAAATAAATTTATTGTGCATGATAAAAAAAAAAAAAAAAAAAAAAA
AAA

hide sequence

RefSeq Acc Id:

XM_006233431 ⟹ XP_006233493

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	236,413,201 - 236,445,176 (-)	NCBI
mRatBN7.2	2	233,752,845 - 233,784,815 (-)	NCBI
Rnor_6.0	2	250,711,819 - 250,744,215 (-)	NCBI
Rnor_5.0	2	269,236,633 - 269,271,033 (-)	NCBI

Sequence:

show sequence

TTCGGCCGGCTGTTTTCCACCGCGGTCGCGCTGTCGCGGGGCGGCGGGGTGGGTTCCTTCGGAT
GCGACCTCCGTCCCGGTGGCTCGCAGCTGCTCTGCGACGCGACAGGCCCGGCGCGTGAGCGGCG
AGGCGCGCGCCGGCGCCGGCCGCCTTCCCTCCCCCTCGCCACCTCCTCCGCCTCCCCCTCAGGA
AACGACAGCTGCGCGGGGCTGGCGCCGCCTCCCGCCACCTACCACGTCCGCCCGGCCGTCGCCC
GGCGCCCCAGCCCGGCCGCGGCGCTCCCCGCCTCTCCGCTAGCCCAGCCGGCGGCTCTGCCCGG
TTGCCGCCCAGCATGAACATCATGGATTTCAACGTGAAGAAGCTGGCGGCCGACGCGGGCACTT
TCCTCAGCCGGGCCGTGCAGTTCACAGAGGAAAAGCTTGGCCAAGCAGAGAAGACAGAACTGGA
TGCTCACCTGGAAAATCTCCTCAGCAAGGCGGAGTGCACCAAAGTGTGGACAGAGAAGATAATG
AAGCAGACTGAGGTGCTGTTGCAGCCAAATCCAAATGCCAGGATAGAAGAATTTGTTTATGAGA
AACTGGACAGAAAAGCGCCAAGTCGTATAAACAACCCAGAACTTTTGGGACAGTATATGATTGA
TGCAGGCACTGAGTTTGGCCCAGGGACAGCTTATGGTAATGCCCTTATTAAATGTGGAGAAACA
CAGAAGCGAATTGGAACAGCTGACAGAGAGCTGATTCAAACATCAGCCTTAAATTTCCTCACTC
CTTTAAGAAACTTTATAGAAGGGGATTACAAGACAATCGCAAAAGAAAGGAAGCTATTACAGAA
TAAGAGACTGGATTTGGATGCTGCAAAAACAAGACTAAAAAAGGCAAAAGCTGCAGAAACTAAA
AGTTCACAACTAAACTCGGCCCGCCCTGAAGGAGATAACATTATGGTAAATTTCTCTTACATGC
TCAACTTCCTGCATGTAAAATGGCTGAAGATTTGGGCAGAGGAAGTGACAAAATCTGAACAGGA
ATTAAGAATAACTCAAAGTGAATTTGATCGTCAGGCAGAGATTACCCGTCTTCTGCTGGAAGGA
ATCAGCAGTACACACGCCCATCATCTCCGCTGTCTGAATGACTTTGTAGAAGCCCAGATGACTT
ACTATGCACAATGTTACCAGTACATGTTAGACCTACAAAAACAACTGGGAAGTTTTCCATCCAA
TTATGTTTCTAACAACAATCAGACTTCTGGGACACCTGTGCCGTATACTTTGTCAAATACCATT
GGTCCTTCTGCTGTGGCTTCAACAGGTAGCCTGGTAATCACCTGTCCTCCTAACCTCAGTGACC
TTAAAGACTCCAGCAGCACCAGGAAGGCCAGGGTGCTGTACGATTATGACGCTGCCAACAGTAC
GGAGCTGTCACTCCTGGCAGACGAGGTAATCACTGTGTTCAGTGTCGTTGGAATGGACTCCGAC
TGGCTAATGGGGGAGAGAGGAAATCAGAAGGGCAAGGTGCCAATTACCTACTTAGAGCTTCTCA
ATTAATTCAGGGAGACCATGAGAGGTTGCCCATCATGACACCATATTTATATAAATAACTCTAA
AGCAGGTTTAAATACTTTCAATGTTAAAGTCACAAGAGACTGAAAAAGAAAAATTACAAGCCAT
CAGAAACTGGCTGTTTGCCAATAAACCTGCATGGTTAATCCTTCATTACAGAATTTATGTTAGC
GATTTCATGACAAGAATGTTTTCTTAAACAATTCTCTTTCTACTGAGGTTTCACTAACAAACAA
GTTCTACTTTTGAGTCCCAACTTAAAAACAAAAGGATTCTTTTCTACTGAATTTTTCATTAACG
GCGAGCTTTTTCTTTTATGCAAAATAAATTTATTGTGCATGATGCCAGTGACTCATTTATTAGG
TACAATAGCCAAAGAATAAAAACCCCTTTTCACCTTGCTGCCCAGTAGAAATCAGATGGCTTAA
GTGCTAGGCTTTAGTAGGGTCTCCTGGCTTTGGAGTTTGGGTTGGGTTGGGTTCAGTTTATTGA
TGTTTAATACACTACTGGATAGTTTCTTCTAAACCTGAGTCTTGAAAAGTATTACCTTATTTCA
TAATTTTGTTAAGGTTGTAGAACACCGGGGACAAATTCATTCACTAAGAATAATTTTAAGATTA
TTCAGTTGCTAAAATTGGCTGCTTAATCAGAACATTGAGAAGATACTACACTACAGTAACGGTT
TGTTGTTGAGCAAGAAGTGTGTAAAACACAGGGTAGTGCATCAGCATTCCTTACAGGCCAAGTA
GGCATGCAGTGGGTGAAGTCCGTCCTCATCAGGGTCTCCGGTTATACTGTCGCTCCCTGGAGAT
GACTAATGACACAGTTGGAACTGGAGAAGTGCTGTAAGGGCTGTGCTATCCATAGCACAAGTTG
CTATACATTGCCAGGTGAGGAATTCTTTGGTTAGGTCTTCAGGTCTCATTCATTCATCATCCAT
CCATCCATTCAAAGGACATTTATTGAGGACCAGGTACTTTGTTGATCAACTAAGTATACTTCTG
TGAACAAGATGTTCTTAAAGAAGACAAACATTAACCTCTAATAGGACTGATGTTGTGATGGAGG
AAATAGAAGCATTGTGTTAGGAATTACCTAGTTTGGATCTGAGAAGTCAGAAGTTGACCAGGTA
GAAGGAAAAGTTGTGTTGGGCCCAGAACCAAGAGAGCATCAATCCGTTCAGAGTAGCTTAACAA
TGAGGTACAAAAGTGCAGTGTGTTTACTCAGAGACTCTGGGATCGTAAACTCTTGAGCTCTGAA
GTAGTATTTAAATAGCACTTTAGAGCATCTATTTGTGTTAAGAGTGCCTAAGAGCTTGGTAAAC
ATGGAGAAATTTAGTTCTTGGTCCCAGCATTAACACCCCTTTATTTCTTTGCTGTCAGATCAAT
TCCTCTGCAGTTTCCTAGTTCTGTAAAGCTCTGACTCACACTTGTTACATACTTAAGGAACTCC
AAAAACAGCTTGGGATGCTAGTGTTCTAGAGAATCAAGTGAATGCAGTTTTGTTGGTGGTGTTT
TTCTCCCTCAGAAAGGAAGTCTCATAGCCTAAATGCCATCTGTTATATTTGTCCATATTTAGTT
TTTAAGGGACTGTAAAAGTGTGGGTGACTTAAAACAGCAGCTTGGTTCATCAAATTAAGTTTTA
GGGAATTAGAGCAGTACAGGGGAAAATATAAATATGGGCTGAATTGATTCTGTGTTTGTATCCT
CACATATTGGACTTCCTGGAATTCAACTCAGATTTAGAGCTGCCATTTTTTTATCAGTAAAATG
GGGATAAGTATGTCACCTGACAGGAGACTAGTCCACAGGTGTTACTTTGTGTTTTGTGCATTTA
GGCAAAGACCTGGCATATAGTAAACATTTTGTAAGCACAGATGCCCCTTTTCATTCCCTGACAC
CATGCAGTATTCTGTTTCCAGCAAGAGTGCTGCTACTAAAGATGGATGCCCTTAGATACAAGAG
GATTCACACTGTAATATTCACAGGAGCAAAGGCTACTTGTACCGTTGTCTATTGTTTAGGCATG
TTCTTTTGTTTAATATTTTTGTTTTAATGAGCTTTACTGTTTGGTTGGATGTTTTGTTTATTTG
GTTTTGACTTAAAGTTATGGGTTTAGTTTCCCCTCAGGTAAAGACCTAAGGAAATTGTTAAGCA
TAGAAGAAAACTCTTAGAAAGCCAATTAATTCATGGTGCAATTCACAGTTATTTAAATCAACCC
TCAGCCCCTGAGCATAATTCAATAGCACAGTAATGAGTGGAAGTTGCGTATATTTGTGAAATAA
TAAACAAGGAGATATTTATAGGCCCTCTACAAACTAAAAAAGAAGTAAAATTTAGCCACCTTTG
TCCTTAAAGTAATCTAACTTACAAGGTTATAGTTAAACATTTTTTCATGGTGCTAATCAAAAAA
ATTCACGTTGCAAGAGATGAGGTTCTTAAAATGAGAATGTACCTCACACTGACAGACAAGGAAA
ATAAGCCTAAGGCCAGCATCCCCAGATTGCTACAGCCCATCCTCCCAATCGGGTACCTTCCAAA
CAGGAGCAAAAGGAAGCCAGCATTAGTTAGGAAGGATGGTTCTGAGGTGAAGTAGCAGGGAGAA
GGTGAGAGGATCGGACAGACTTGCTTATGCAGAGAGGTCTCAAGACAGCTGTGCTTTGTCACAC
ACCATTCCAACACCTGAAACTTTGAAATGAATTGTCTAGCTGCACAAGCCAGAGTGCAGAGCTG
TGGAGGGGAGCATGGCTGACAGGCAGGTGTGCTCCAAGCTCTCTGCTTCCCTGTGCACTTGTTG
CACCATAAAACTCTGATGTTAAAAAAGTTCCACACCTGCCTTCCTCACTTTGTCCTAATTGGAA
TGTCGGCAAAGTACAAGACTTCAAACCAGCAGTCTCGGCACTGCTGGGAACTTGTTGAAAATGC
TAATTGATGCTTTCAAATATTCTACCTTATTTATACTTCTGTCTACACGGGCCTGTGGATTAGT
AGTATTAATCTCCCCTGTGGCAGCCTTTTAAATATTTTTTTTTCTATTTTTCGGAGCTGGGGAC
CGAACCTAGGGCCTTGCGCTTGCTAGGCAAGCGCTCCACCACTGAGCTAAATCCCCAACCCCCT
TTTTAATATTTTAAGACAAAAACTTAATTTTACTTTCGTTACTATGTCCTAACTATTAATTGTA
ATTATGTTATTTTTATAATTTATTTATTTAGCATGTAACTGTCACTTTGGAATGTAGCCTTTCT
AAGATAGAGACTATAATTCTGTTAATCATAAATTACTCTTAGCACTCAGCTCTTATATATGCTA
AATAAATACTTGTTGGGTAAAAGGGAAAAATGCTAATACCCGTGTCTTCCCCCACAAAACCTAC
TGAGCCAAATTCTGGAAGCAGGGCCCCTCAGTTGTACAGTAAGCCATTTGCATGGTCCTGCAGT
AGTCAGTTGTGAGAGGCACTGCAGAGCTGACAGAGGTGGACATTCACCCTCAGGCGCCTACAAT
TTGACAACACTTGAACATTTCCCCTTGCCTCTGTAAGCCTTACCACCACTGTAACTGGCTGAGG
TTCTTTCAGACCAGTCTAAGAAGTGGGTATGAAGGTAGAAGGATACATTTAGTGTCAGTAAGGA
AAGTATTGCTTAGAACAGCAGGACCTGGGTGACACAGGTCTCTGGGAATGTGGCCCCATCGTCT
AAAGCAGTGAGTGGTTCTCAACCCCTTTCTCGCCTGAAACCATCAGAAAACACATATTTACATT
ATGATTCATAACAGTAGCGAAATAAGTTATGAAGTAGCAATGAAAATAATTTTATGGTTGGGGT
CACCACAACATGAGGAACTGGATTAGAGGCCACAGCACCAGGAAGGCTAAGAACCGCAGCTTAA
ACAAAGATGAGCTCTAACCACCATACTTCCACACAGTGCCTTTGAATTGGGGTTTAGCCTCGAG
ACACCCTGAGAAGCCAGTGAGGCCATATTAGACTAATGTATGTACACCTCTGTACCTCAGTCCC
TAAGCTCACTTCTACGGCAGTAGACTTTTTAAGAATTATTAATACTTTTTTATTAATACAAGTC
ATAATAAACTGACAAAAAAATTTTAGAGGTAAAAATAAAAACATGGCGACAGTTCCATCGTCTA
AGAAGTGCTGTCTGAGGTGTGGCCTCCAGATTCTCTGTACACTTACAGATTTTTTTTAATGGGG
ATCAAATTATACATGCTGTTTTGTAACTTTTTCACTCAACAGTGCCATGCCTATCTTACTGTGT
CATATGTATTTCTACATCTTTTTTAATGGATGCATGATATTTCTTCATATGTGCCACATTTTGT
TAAACTACTGTTGAATTTTTAGGTTTCCAGTTTTTCACTAATAAACTGCTTTGAAGAACA

hide sequence

RefSeq Acc Id:

XM_006233433 ⟹ XP_006233495

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	236,413,201 - 236,445,176 (-)	NCBI
mRatBN7.2	2	233,752,845 - 233,784,814 (-)	NCBI
Rnor_6.0	2	250,711,819 - 250,744,214 (-)	NCBI
Rnor_5.0	2	269,236,633 - 269,271,033 (-)	NCBI

Sequence:

show sequence

TCGGCCGGCTGTTTTCCACCGCGGTCGCGCTGTCGCGGGGCGGCGGGGTGGGTTCCTTCGGATG
CGACCTCCGTCCCGGTGGCTCGCAGCTGCTCTGCGACGCGACAGGCCCGGCGCGTGAGCGGCGA
GGCGCGCGCCGGCGCCGGCCGCCTTCCCTCCCCCTCGCCACCTCCTCCGCCTCCCCCTCAGGAA
ACGACAGCTGCGCGGGGCTGGCGCCGCCTCCCGCCACCTACCACGTCCGCCCGGCCGTCGCCCG
GCGCCCCAGCCCGGCCGCGGCGCTCCCCGCCTCTCCGCTAGCCCAGCCGGCGGCTCTGCCCGGT
TGCCGCCCAGCATGAACATCATGGATTTCAACGTGAAGAAGCTGGCGGCCGACGCGGGCACTTT
CCTCAGCCGGGCCGTGCAGTTCACAGAGGAAAAGCTTGGCCAAGCAGAGAAGACAGAACTGGAT
GCTCACCTGGAAAATCTCCTCAGCAAGGCGGAGTGCACCAAAGTGTGGACAGAGAAGATAATGA
AGCAGACTGAGGTGCTGTTGCAGCCAAATCCAAATGCCAGGATAGAAGAATTTGTTTATGAGAA
ACTGGACAGAAAAGCGCCAAGTCGTATAAACAACCCAGAACTTTTGGGACAGTATATGATTGAT
GCAGGCACTGAGTTTGGCCCAGGGACAGCTTATGGTAATGCCCTTATTAAATGTGGAGAAACAC
AGAAGCGAATTGGAACAGCTGACAGAGAGCTGATTCAAACATCAGCCTTAAATTTCCTCACTCC
TTTAAGAAACTTTATAGAAGGGGATTACAAGACAATCGCAAAAGAAAGGAAGCTATTACAGAAT
AAGAGACTGGATTTGGATGCTGCAAAAACAAGACTAAAAAAGGCAAAAGCTGCAGAAACTAAAA
GTTCACAACTAAACTCGGCCCGCCCTGAAGGAGATAACATTATGATTTGGGCAGAGGAAGTGAC
AAAATCTGAACAGGAATTAAGAATAACTCAAAGTGAATTTGATCGTCAGGCAGAGATTACCCGT
CTTCTGCTGGAAGGAATCAGCAGTACACACGCCCATCATCTCCGCTGTCTGAATGACTTTGTAG
AAGCCCAGATGACTTACTATGCACAATGTTACCAGTACATGTTAGACCTACAAAAACAACTGGG
AAGTTTTCCATCCAATTATGTTTCTAACAACAATCAGACTTCTGGGACACCTGTGCCGTATACT
TTGTCAAATACCATTGGTCCTTCTGCTGTGGCTTCAACAGGTAGCCTGGTAATCACCTGTCCTC
CTAACCTCAGTGACCTTAAAGACTCCAGCAGCACCAGGAAGGCCAGGGTGCTGTACGATTATGA
CGCTGCCAACAGTACGGAGCTGTCACTCCTGGCAGACGAGGTAATCACTGTGTTCAGTGTCGTT
GGAATGGACTCCGACTGGCTAATGGGGGAGAGAGGAAATCAGAAGGGCAAGGTGCCAATTACCT
ACTTAGAGCTTCTCAATTAATTCAGGGAGACCATGAGAGGTTGCCCATCATGACACCATATTTA
TATAAATAACTCTAAAGCAGGTTTAAATACTTTCAATGTTAAAGTCACAAGAGACTGAAAAAGA
AAAATTACAAGCCATCAGAAACTGGCTGTTTGCCAATAAACCTGCATGGTTAATCCTTCATTAC
AGAATTTATGTTAGCGATTTCATGACAAGAATGTTTTCTTAAACAATTCTCTTTCTACTGAGGT
TTCACTAACAAACAAGTTCTACTTTTGAGTCCCAACTTAAAAACAAAAGGATTCTTTTCTACTG
AATTTTTCATTAACGGCGAGCTTTTTCTTTTATGCAAAATAAATTTATTGTGCATGATGCCAGT
GACTCATTTATTAGGTACAATAGCCAAAGAATAAAAACCCCTTTTCACCTTGCTGCCCAGTAGA
AATCAGATGGCTTAAGTGCTAGGCTTTAGTAGGGTCTCCTGGCTTTGGAGTTTGGGTTGGGTTG
GGTTCAGTTTATTGATGTTTAATACACTACTGGATAGTTTCTTCTAAACCTGAGTCTTGAAAAG
TATTACCTTATTTCATAATTTTGTTAAGGTTGTAGAACACCGGGGACAAATTCATTCACTAAGA
ATAATTTTAAGATTATTCAGTTGCTAAAATTGGCTGCTTAATCAGAACATTGAGAAGATACTAC
ACTACAGTAACGGTTTGTTGTTGAGCAAGAAGTGTGTAAAACACAGGGTAGTGCATCAGCATTC
CTTACAGGCCAAGTAGGCATGCAGTGGGTGAAGTCCGTCCTCATCAGGGTCTCCGGTTATACTG
TCGCTCCCTGGAGATGACTAATGACACAGTTGGAACTGGAGAAGTGCTGTAAGGGCTGTGCTAT
CCATAGCACAAGTTGCTATACATTGCCAGGTGAGGAATTCTTTGGTTAGGTCTTCAGGTCTCAT
TCATTCATCATCCATCCATCCATTCAAAGGACATTTATTGAGGACCAGGTACTTTGTTGATCAA
CTAAGTATACTTCTGTGAACAAGATGTTCTTAAAGAAGACAAACATTAACCTCTAATAGGACTG
ATGTTGTGATGGAGGAAATAGAAGCATTGTGTTAGGAATTACCTAGTTTGGATCTGAGAAGTCA
GAAGTTGACCAGGTAGAAGGAAAAGTTGTGTTGGGCCCAGAACCAAGAGAGCATCAATCCGTTC
AGAGTAGCTTAACAATGAGGTACAAAAGTGCAGTGTGTTTACTCAGAGACTCTGGGATCGTAAA
CTCTTGAGCTCTGAAGTAGTATTTAAATAGCACTTTAGAGCATCTATTTGTGTTAAGAGTGCCT
AAGAGCTTGGTAAACATGGAGAAATTTAGTTCTTGGTCCCAGCATTAACACCCCTTTATTTCTT
TGCTGTCAGATCAATTCCTCTGCAGTTTCCTAGTTCTGTAAAGCTCTGACTCACACTTGTTACA
TACTTAAGGAACTCCAAAAACAGCTTGGGATGCTAGTGTTCTAGAGAATCAAGTGAATGCAGTT
TTGTTGGTGGTGTTTTTCTCCCTCAGAAAGGAAGTCTCATAGCCTAAATGCCATCTGTTATATT
TGTCCATATTTAGTTTTTAAGGGACTGTAAAAGTGTGGGTGACTTAAAACAGCAGCTTGGTTCA
TCAAATTAAGTTTTAGGGAATTAGAGCAGTACAGGGGAAAATATAAATATGGGCTGAATTGATT
CTGTGTTTGTATCCTCACATATTGGACTTCCTGGAATTCAACTCAGATTTAGAGCTGCCATTTT
TTTATCAGTAAAATGGGGATAAGTATGTCACCTGACAGGAGACTAGTCCACAGGTGTTACTTTG
TGTTTTGTGCATTTAGGCAAAGACCTGGCATATAGTAAACATTTTGTAAGCACAGATGCCCCTT
TTCATTCCCTGACACCATGCAGTATTCTGTTTCCAGCAAGAGTGCTGCTACTAAAGATGGATGC
CCTTAGATACAAGAGGATTCACACTGTAATATTCACAGGAGCAAAGGCTACTTGTACCGTTGTC
TATTGTTTAGGCATGTTCTTTTGTTTAATATTTTTGTTTTAATGAGCTTTACTGTTTGGTTGGA
TGTTTTGTTTATTTGGTTTTGACTTAAAGTTATGGGTTTAGTTTCCCCTCAGGTAAAGACCTAA
GGAAATTGTTAAGCATAGAAGAAAACTCTTAGAAAGCCAATTAATTCATGGTGCAATTCACAGT
TATTTAAATCAACCCTCAGCCCCTGAGCATAATTCAATAGCACAGTAATGAGTGGAAGTTGCGT
ATATTTGTGAAATAATAAACAAGGAGATATTTATAGGCCCTCTACAAACTAAAAAAGAAGTAAA
ATTTAGCCACCTTTGTCCTTAAAGTAATCTAACTTACAAGGTTATAGTTAAACATTTTTTCATG
GTGCTAATCAAAAAAATTCACGTTGCAAGAGATGAGGTTCTTAAAATGAGAATGTACCTCACAC
TGACAGACAAGGAAAATAAGCCTAAGGCCAGCATCCCCAGATTGCTACAGCCCATCCTCCCAAT
CGGGTACCTTCCAAACAGGAGCAAAAGGAAGCCAGCATTAGTTAGGAAGGATGGTTCTGAGGTG
AAGTAGCAGGGAGAAGGTGAGAGGATCGGACAGACTTGCTTATGCAGAGAGGTCTCAAGACAGC
TGTGCTTTGTCACACACCATTCCAACACCTGAAACTTTGAAATGAATTGTCTAGCTGCACAAGC
CAGAGTGCAGAGCTGTGGAGGGGAGCATGGCTGACAGGCAGGTGTGCTCCAAGCTCTCTGCTTC
CCTGTGCACTTGTTGCACCATAAAACTCTGATGTTAAAAAAGTTCCACACCTGCCTTCCTCACT
TTGTCCTAATTGGAATGTCGGCAAAGTACAAGACTTCAAACCAGCAGTCTCGGCACTGCTGGGA
ACTTGTTGAAAATGCTAATTGATGCTTTCAAATATTCTACCTTATTTATACTTCTGTCTACACG
GGCCTGTGGATTAGTAGTATTAATCTCCCCTGTGGCAGCCTTTTAAATATTTTTTTTTCTATTT
TTCGGAGCTGGGGACCGAACCTAGGGCCTTGCGCTTGCTAGGCAAGCGCTCCACCACTGAGCTA
AATCCCCAACCCCCTTTTTAATATTTTAAGACAAAAACTTAATTTTACTTTCGTTACTATGTCC
TAACTATTAATTGTAATTATGTTATTTTTATAATTTATTTATTTAGCATGTAACTGTCACTTTG
GAATGTAGCCTTTCTAAGATAGAGACTATAATTCTGTTAATCATAAATTACTCTTAGCACTCAG
CTCTTATATATGCTAAATAAATACTTGTTGGGTAAAAGGGAAAAATGCTAATACCCGTGTCTTC
CCCCACAAAACCTACTGAGCCAAATTCTGGAAGCAGGGCCCCTCAGTTGTACAGTAAGCCATTT
GCATGGTCCTGCAGTAGTCAGTTGTGAGAGGCACTGCAGAGCTGACAGAGGTGGACATTCACCC
TCAGGCGCCTACAATTTGACAACACTTGAACATTTCCCCTTGCCTCTGTAAGCCTTACCACCAC
TGTAACTGGCTGAGGTTCTTTCAGACCAGTCTAAGAAGTGGGTATGAAGGTAGAAGGATACATT
TAGTGTCAGTAAGGAAAGTATTGCTTAGAACAGCAGGACCTGGGTGACACAGGTCTCTGGGAAT
GTGGCCCCATCGTCTAAAGCAGTGAGTGGTTCTCAACCCCTTTCTCGCCTGAAACCATCAGAAA
ACACATATTTACATTATGATTCATAACAGTAGCGAAATAAGTTATGAAGTAGCAATGAAAATAA
TTTTATGGTTGGGGTCACCACAACATGAGGAACTGGATTAGAGGCCACAGCACCAGGAAGGCTA
AGAACCGCAGCTTAAACAAAGATGAGCTCTAACCACCATACTTCCACACAGTGCCTTTGAATTG
GGGTTTAGCCTCGAGACACCCTGAGAAGCCAGTGAGGCCATATTAGACTAATGTATGTACACCT
CTGTACCTCAGTCCCTAAGCTCACTTCTACGGCAGTAGACTTTTTAAGAATTATTAATACTTTT
TTATTAATACAAGTCATAATAAACTGACAAAAAAATTTTAGAGGTAAAAATAAAAACATGGCGA
CAGTTCCATCGTCTAAGAAGTGCTGTCTGAGGTGTGGCCTCCAGATTCTCTGTACACTTACAGA
TTTTTTTTAATGGGGATCAAATTATACATGCTGTTTTGTAACTTTTTCACTCAACAGTGCCATG
CCTATCTTACTGTGTCATATGTATTTCTACATCTTTTTTAATGGATGCATGATATTTCTTCATA
TGTGCCACATTTTGTTAAACTACTGTTGAATTTTTAGGTTTCCAGTTTTTCACTAATAAACTGC
TTTGAAGAACA

hide sequence

RefSeq Acc Id:

XM_006233435 ⟹ XP_006233497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	236,411,194 - 236,445,176 (-)	NCBI
mRatBN7.2	2	233,750,838 - 233,784,813 (-)	NCBI
Rnor_6.0	2	250,709,812 - 250,744,213 (-)	NCBI
Rnor_5.0	2	269,236,633 - 269,271,033 (-)	NCBI

Sequence:

show sequence

CGGCCGGCTGTTTTCCACCGCGGTCGCGCTGTCGCGGGGCGGCGGGGTGGGTTCCTTCGGATGC
GACCTCCGTCCCGGTGGCTCGCAGCTGCTCTGCGACGCGACAGGCCCGGCGCGTGAGCGGCGAG
GCGCGCGCCGGCGCCGGCCGCCTTCCCTCCCCCTCGCCACCTCCTCCGCCTCCCCCTCAGGAAA
CGACAGCTGCGCGGGGCTGGCGCCGCCTCCCGCCACCTACCACGTCCGCCCGGCCGTCGCCCGG
CGCCCCAGCCCGGCCGCGGCGCTCCCCGCCTCTCCGCTAGCCCAGCCGGCGGCTCTGCCCGGTT
GCCGCCCAGCATGAACATCATGGATTTCAACGTGAAGAAGCTGGCGGCCGACGCGGGCACTTTC
CTCAGCCGGGCCGTGCAGTTCACAGAGGAAAAGCTTGGCCAAGCAGAGAAGACAGAACTGGATG
CTCACCTGGAAAATCTCCTCAGCAAGGCGGAGTGCACCAAAGTGTGGACAGAGAAGATAATGAA
GCAGACTGAGGTGCTGTTGCAGCCAAATCCAAATGCCAGGATAGAAGAATTTGTTTATGAGAAA
CTGGACAGAAAAGCGCCAAGTCGTATAAACAACCCAGAACTTTTGGGACAGTATATGATTGATG
CAGGCACTGAGTTTGGCCCAGGGACAGCTTATGGTAATGCCCTTATTAAATGTGGAGAAACACA
GAAGCGAATTGGAACAGCTGACAGAGAGCTGATTCAAACATCAGCCTTAAATTTCCTCACTCCT
TTAAGAAACTTTATAGAAGGGGATTACAAGACAATCGCAAAAGAAAGGAAGCTATTACAGAATA
AGAGACTGGATTTGGATGCTGCAAAAACAAGACTAAAAAAGGCAAAAGCTGCAGAAACTAAAAG
TTCATCTGAACAGGAATTAAGAATAACTCAAAGTGAATTTGATCGTCAGGCAGAGATTACCCGT
CTTCTGCTGGAAGGAATCAGCAGTACACACGCCCATCATCTCCGCTGTCTGAATGACTTTGTAG
AAGCCCAGATGACTTACTATGCACAATGTTACCAGTACATGTTAGACCTACAAAAACAACTGGG
AAGTTTTCCATCCAATTATGTTTCTAACAACAATCAGACTTCTGGGACACCTGTGCCGTATACT
TTGTCAAATACCATTGGTCCTTCTGCTGTGGCTTCAACAGGTAGCCTGGTAATCACCTGTCCTC
CTAACCTCAGTGACCTTAAAGACTCCAGCAGCACCAGGAAGGCCAGGGTGCTGTACGATTATGA
CGCTGCCAACAGTACGGAGCTGTCACTCCTGGCAGACGAGTAATACACAGGTTGACGTGTACCG
CCTCCCTGATGTGAAGCATGCAGTACTTCTGAAACAGCTCGCTGGCCAGCAGTGCACCACTTGA
GAATTTATAAGAAATGCAAACTCTCTGATCCCTGCTGAATAAGAAACTCCAGGGTGGAGTACAG
CAACGTGTGTTTTAACAAACCCTCAGGGAACATGATGCATGTAGAACCTGGTGAACCACAGTTG
TGCAAATTAAAAGAATTCATGCAACTCTCA

hide sequence

RefSeq Acc Id:

XM_017590681 ⟹ XP_017446170

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	236,411,194 - 236,445,176 (-)	NCBI
mRatBN7.2	2	233,750,838 - 233,784,815 (-)	NCBI
Rnor_6.0	2	250,709,812 - 250,744,215 (-)	NCBI

Sequence:

show sequence

TTCGGCCGGCTGTTTTCCACCGCGGTCGCGCTGTCGCGGGGCGGCGGGGTGGGTTCCTTCGGAT
GCGACCTCCGTCCCGGTGGCTCGCAGCTGCTCTGCGACGCGACAGGCCCGGCGCGTGAGCGGCG
AGGCGCGCGCCGGCGCCGGCCGCCTTCCCTCCCCCTCGCCACCTCCTCCGCCTCCCCCTCAGGA
AACGACAGCTGCGCGGGGCTGGCGCCGCCTCCCGCCACCTACCACGTCCGCCCGGCCGTCGCCC
GGCGCCCCAGCCCGGCCGCGGCGCTCCCCGCCTCTCCGCTAGCCCAGCCGGCGGCTCTGCCCGG
TTGCCGCCCAGCATGAACATCATGGATTTCAACGTGAAGAAGCTGGCGGCCGACGCGGGCACTT
TCCTCAGCCGGGCCGTGCAGTTCACAGAGGAAAAGCTTGGCCAAGCAGAGAAGACAGAACTGGA
TGCTCACCTGGAAAATCTCCTCAGCAAGGCGGAGTGCACCAAAGTGTGGACAGAGAAGATAATG
AAGCAGACTGAGGTGCTGTTGCAGCCAAATCCAAATGCCAGGATAGAAGAATTTGTTTATGAGA
AACTGGACAGAAAAGCGCCAAGTCGTATAAACAACCCAGAACTTTTGGGACAGTATATGATTGA
TGCAGGCACTGAGTTTGGCCCAGGGACAGCTTATGGTAATGCCCTTATTAAATGTGGAGAAACA
CAGAAGCGAATTGGAACAGCTGACAGAGAGCTGATTCAAACATCAGCCTTAAATTTCCTCACTC
CTTTAAGAAACTTTATAGAAGGGGATTACAAGACAATCGCAAAAGAAAGGAAGCTATTACAGAA
TAAGAGACTGGATTTGGATGCTGCAAAAACAAGACTAAAAAAGGCAAAAGCTGCAGAAACTAAA
AGTTCACAACTAAACTCGGCCCGCCCTGAAGGAGATAACATTATGGTAAATTTCTCTTACATGC
TCAACTTCCTGCATGTAAAATGGCTGAAGATTTGGGCAGAGGAAGTGACAAAATCTGAACAGGA
ATTAAGAATAACTCAAAGTGAATTTGATCGTCAGGCAGAGATTACCCGTCTTCTGCTGGAAGGA
ATCAGCAGTACACACGCCCATCATCTCCGCTGTCTGAATGACTTTGTAGAAGCCCAGATGACTT
ACTATGCACAATGTTACCAGTACATGTTAGACCTACAAAAACAACTGGGAAGTTTTCCATCCAA
TTATGTTTCTAACAACAATCAGACTTCTGGGACACCTGTGCCGTATACTTTGTCAAATACCATT
GGTCCTTCTGCTGTGGCTTCAACAGGTAGCCTGGTAATCACCTGTCCTCCTAACCTCAGTGACC
TTAAAGACTCCAGCAGCACCAGGAAGGCCAGGGTGCTGTACGATTATGACGCTGCCAACAGTAC
GGAGCTGTCACTCCTGGCAGACGAGGTAATCACTGTGTTCAGTGTCGTTGGAATGGACTCCGAC
TGGCTAATGGGGGAGAGAGGAAATCAGAAGGGCAAGTAATACACAGGTTGACGTGTACCGCCTC
CCTGATGTGAAGCATGCAGTACTTCTGAAACAGCTCGCTGGCCAGCAGTGCACCACTTGAGAAT
TTATAAGAAATGCAAACTCTCTGATCCCTGCTGAATAAGAAACTCCAGGGTGGAGTACAGCAAC
GTGTGTTTTAACAAACCCTCAGGGAACATGATGCATGTAGAACCTGGTGAACCACAGTTGTGCA
AATTAAAAGAATTCATGCAACTCTCA

hide sequence

RefSeq Acc Id:

XM_017590682 ⟹ XP_017446171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	236,411,194 - 236,445,176 (-)	NCBI
mRatBN7.2	2	233,750,838 - 233,784,816 (-)	NCBI
Rnor_6.0	2	250,709,812 - 250,744,216 (-)	NCBI

Sequence:

show sequence

CTTCGGCCGGCTGTTTTCCACCGCGGTCGCGCTGTCGCGGGGCGGCGGGGTGGGTTCCTTCGGA
TGCGACCTCCGTCCCGGTGGCTCGCAGCTGCTCTGCGACGCGACAGGCCCGGCGCGTGAGCGGC
GAGGCGCGCGCCGGCGCCGGCCGCCTTCCCTCCCCCTCGCCACCTCCTCCGCCTCCCCCTCAGG
AAACGACAGCTGCGCGGGGCTGGCGCCGCCTCCCGCCACCTACCACGTCCGCCCGGCCGTCGCC
CGGCGCCCCAGCCCGGCCGCGGCGCTCCCCGCCTCTCCGCTAGCCCAGCCGGCGGCTCTGCCCG
GTTGCCGCCCAGCATGAACATCATGGATTTCAACGTGAAGAAGCTGGCGGCCGACGCGGGCACT
TTCCTCAGCCGGGCCGTGCAGTTCACAGAGGAAAAGCTTGGCCAAGCAGAGAAGACAGAACTGG
ATGCTCACCTGGAAAATCTCCTCAGCAAGGCGGAGTGCACCAAAGTGTGGACAGAGAAGATAAT
GAAGCAGACTGAGGTGCTGTTGCAGCCAAATCCAAATGCCAGGATAGAAGAATTTGTTTATGAG
AAACTGGACAGAAAAGCGCCAAGTCGTATAAACAACCCAGAACTTTTGGGACAGTATATGATTG
ATGCAGGCACTGAGTTTGGCCCAGGGACAGCTTATGGTAATGCCCTTATTAAATGTGGAGAAAC
ACAGAAGCGAATTGGAACAGCTGACAGAGAGCTGATTCAAACATCAGCCTTAAATTTCCTCACT
CCTTTAAGAAACTTTATAGAAGGGGATTACAAGACAATCGCAAAAGAAAGGAAGCTATTACAGA
ATAAGAGACTGGATTTGGATGCTGCAAAAACAAGACTAAAAAAGGCAAAAGCTGCAGAAACTAA
AAGTTCACAACTAAACTCGGCCCGCCCTGAAGGAGATAACATTATGGTAAATTTCTCTTACATG
CTCAACTTCCTGCATGTAAAATGGCTGAAGATTTGGGCAGAGGAAGTGACAAAATCTGAACAGG
AATTAAGAATAACTCAAAGTGAATTTGATCGTCAGGCAGAGATTACCCGTCTTCTGCTGGAAGG
AATCAGCAGTACACACGCCCATCATCTCCGCTGTCTGAATGACTTTGTAGAAGCCCAGATGACT
TACTATGCACAATGTTACCAGTACATGTTAGACCTACAAAAACAACTGGGAAGTTTTCCATCCA
ATTATGTTTCTAACAACAATCAGACTTCTGGGACACCTGTGCCGTATACTTTGTCAAATACCAT
TGGTCCTTCTGCTGTGGCTTCAACAGGTAGCCTGGTAATCACCTGTCCTCCTAACCTCAGTGAC
CTTAAAGACTCCAGCAGCACCAGGAAGGCCAGGGTGCTGTACGATTATGACGCTGCCAACAGTA
CGGAGCTGTCACTCCTGGCAGACGAGTAATACACAGGTTGACGTGTACCGCCTCCCTGATGTGA
AGCATGCAGTACTTCTGAAACAGCTCGCTGGCCAGCAGTGCACCACTTGAGAATTTATAAGAAA
TGCAAACTCTCTGATCCCTGCTGAATAAGAAACTCCAGGGTGGAGTACAGCAACGTGTGTTTTA
ACAAACCCTCAGGGAACATGATGCATGTAGAACCTGGTGAACCACAGTTGTGCAAATTAAAAGA
ATTCATGCAACTCTCA

hide sequence

RefSeq Acc Id:

XM_039101876 ⟹ XP_038957804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	236,411,194 - 236,445,225 (-)	NCBI
mRatBN7.2	2	233,750,838 - 233,784,813 (-)	NCBI

RefSeq Acc Id:

XM_063281445 ⟹ XP_063137515

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	236,417,774 - 236,445,176 (-)	NCBI

RefSeq Acc Id:

XM_063281446 ⟹ XP_063137516

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	236,413,201 - 236,437,752 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011929	(Get FASTA)	NCBI Sequence Viewer
	NP_001426430	(Get FASTA)	NCBI Sequence Viewer
	NP_001426431	(Get FASTA)	NCBI Sequence Viewer
	NP_001426432	(Get FASTA)	NCBI Sequence Viewer
	NP_001426433	(Get FASTA)	NCBI Sequence Viewer
	XP_006233493	(Get FASTA)	NCBI Sequence Viewer
	XP_006233495	(Get FASTA)	NCBI Sequence Viewer
	XP_006233497	(Get FASTA)	NCBI Sequence Viewer
	XP_017446170	(Get FASTA)	NCBI Sequence Viewer
	XP_017446171	(Get FASTA)	NCBI Sequence Viewer
	XP_038957804	(Get FASTA)	NCBI Sequence Viewer
	XP_063137515	(Get FASTA)	NCBI Sequence Viewer
	XP_063137516	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79085	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017771
	ENSRNOP00000017771.4
	ENSRNOP00000078654
	ENSRNOP00000092051
	ENSRNOP00000093719
GenBank Protein	Q6AYE2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001011929 ⟸ NM_001011929

- UniProtKB:

Q6AYE2 (UniProtKB/Swiss-Prot), A0A8I6ADA0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNIMDFNVKKLAADAGTFLSRAVQFTEEKLGQAEKTELDAHLENLLSKAECTKVWTEKIMKQTE
VLLQPNPNARIEEFVYEKLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKRI
GTADRELIQTSALNFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETKSSSE
QELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQKQLGSFP
SNYVSNNNQTSGTPVPYTLSNTIGPSAVASTGSLVITCPPNLSDLKDSSSTRKARVLYDYDAAN
STELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLN

hide sequence

RefSeq Acc Id:

XP_006233497 ⟸ XM_006233435

- Peptide Label:

isoform X8

- Sequence:

show sequence

MNIMDFNVKKLAADAGTFLSRAVQFTEEKLGQAEKTELDAHLENLLSKAECTKVWTEKIMKQTE
VLLQPNPNARIEEFVYEKLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKRI
GTADRELIQTSALNFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETKSSSE
QELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQKQLGSFP
SNYVSNNNQTSGTPVPYTLSNTIGPSAVASTGSLVITCPPNLSDLKDSSSTRKARVLYDYDAAN
STELSLLADE

hide sequence

RefSeq Acc Id:

XP_006233493 ⟸ XM_006233431

- Peptide Label:

isoform X2

- Sequence:

show sequence

MNIMDFNVKKLAADAGTFLSRAVQFTEEKLGQAEKTELDAHLENLLSKAECTKVWTEKIMKQTE
VLLQPNPNARIEEFVYEKLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKRI
GTADRELIQTSALNFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETKSSQL
NSARPEGDNIMVNFSYMLNFLHVKWLKIWAEEVTKSEQELRITQSEFDRQAEITRLLLEGISST
HAHHLRCLNDFVEAQMTYYAQCYQYMLDLQKQLGSFPSNYVSNNNQTSGTPVPYTLSNTIGPSA
VASTGSLVITCPPNLSDLKDSSSTRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMG
ERGNQKGKVPITYLELLN

hide sequence

RefSeq Acc Id:

XP_006233495 ⟸ XM_006233433

- Peptide Label:

isoform X4

- Sequence:

show sequence

MNIMDFNVKKLAADAGTFLSRAVQFTEEKLGQAEKTELDAHLENLLSKAECTKVWTEKIMKQTE
VLLQPNPNARIEEFVYEKLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKRI
GTADRELIQTSALNFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETKSSQL
NSARPEGDNIMIWAEEVTKSEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQM
TYYAQCYQYMLDLQKQLGSFPSNYVSNNNQTSGTPVPYTLSNTIGPSAVASTGSLVITCPPNLS
DLKDSSSTRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLEL
LN

hide sequence

RefSeq Acc Id:	XP_017446171 ⟸ XM_017590682
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6ADA0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNIMDFNVKKLAADAGTFLSRAVQFTEEKLGQAEKTELDAHLENLLSKAECTKVWTEKIMKQTE VLLQPNPNARIEEFVYEKLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKRI GTADRELIQTSALNFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETKSSQL NSARPEGDNIMVNFSYMLNFLHVKWLKIWAEEVTKSEQELRITQSEFDRQAEITRLLLEGISST HAHHLRCLNDFVEAQMTYYAQCYQYMLDLQKQLGSFPSNYVSNNNQTSGTPVPYTLSNTIGPSA VASTGSLVITCPPNLSDLKDSSSTRKARVLYDYDAANSTELSLLADE hide sequence

RefSeq Acc Id:	XP_017446170 ⟸ XM_017590681
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6ADA0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNIMDFNVKKLAADAGTFLSRAVQFTEEKLGQAEKTELDAHLENLLSKAECTKVWTEKIMKQTE VLLQPNPNARIEEFVYEKLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIKCGETQKRI GTADRELIQTSALNFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETKSSQL NSARPEGDNIMVNFSYMLNFLHVKWLKIWAEEVTKSEQELRITQSEFDRQAEITRLLLEGISST HAHHLRCLNDFVEAQMTYYAQCYQYMLDLQKQLGSFPSNYVSNNNQTSGTPVPYTLSNTIGPSA VASTGSLVITCPPNLSDLKDSSSTRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMG ERGNQKGK hide sequence

Ensembl Acc Id:

ENSRNOP00000074019 ⟸ ENSRNOT00000084337

Ensembl Acc Id:

ENSRNOP00000017771 ⟸ ENSRNOT00000017770

RefSeq Acc Id:	XP_038957804 ⟸ XM_039101876
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000078654 ⟸ ENSRNOT00000109147

Ensembl Acc Id:

ENSRNOP00000092051 ⟸ ENSRNOT00000098552

Ensembl Acc Id:

ENSRNOP00000093719 ⟸ ENSRNOT00000104475

RefSeq Acc Id:	XP_063137516 ⟸ XM_063281446
- Peptide Label:	isoform X6
- UniProtKB:	A6HW96 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063137515 ⟸ XM_063281445
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ADA0 (UniProtKB/TrEMBL)

Protein Domains

BAR SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYE2-F1-model_v2	AlphaFold	Q6AYE2	1-365	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691819

Promoter ID:

EPDNEW_R2326

Type:

initiation region

Name:

Sh3glb1_2

Description:

SH3 domain -containing GRB2-like endophilin B1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R2327

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	250,743,986 - 250,744,046	EPDNEW

RGD ID:

13691802

Promoter ID:

EPDNEW_R2327

Type:

initiation region

Name:

Sh3glb1_1

Description:

SH3 domain -containing GRB2-like endophilin B1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R2326

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	250,744,204 - 250,744,264	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304859	AgrOrtholog
BioCyc Gene	G2FUF-50940	BioCyc
Ensembl Genes	ENSRNOG00000012957	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000017770	ENTREZGENE
	ENSRNOT00000017770.6	UniProtKB/Swiss-Prot
	ENSRNOT00000098552	ENTREZGENE
	ENSRNOT00000104475	ENTREZGENE
	ENSRNOT00000109147	ENTREZGENE
Gene3D-CATH	1.20.1270.60	UniProtKB/Swiss-Prot
	SH3 Domains	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7123144	IMAGE-MGC_LOAD
InterPro	AH/BAR_dom_sf	UniProtKB/Swiss-Prot
	BAR_dom	UniProtKB/Swiss-Prot
	Endophilin_SH3RF	UniProtKB/Swiss-Prot
	SH3-like_dom_sf	UniProtKB/Swiss-Prot
	SH3_domain	UniProtKB/Swiss-Prot
	SH3GLB1_BAR	UniProtKB/Swiss-Prot
	SH3GLB_SH3	UniProtKB/Swiss-Prot
KEGG Report	rno:292156	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94050	IMAGE-MGC_LOAD
NCBI Gene	292156	ENTREZGENE
PANTHER	PTHR14167:SF52	UniProtKB/Swiss-Prot
	SH3 DOMAIN-CONTAINING	UniProtKB/Swiss-Prot
Pfam	BAR	UniProtKB/Swiss-Prot
	SH3_9	UniProtKB/Swiss-Prot
PhenoGen	Sh3glb1	PhenoGen
PROSITE	BAR	UniProtKB/Swiss-Prot
	SH3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000012957	RatGTEx
SMART	BAR	UniProtKB/Swiss-Prot
	SH3	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF103657	UniProtKB/Swiss-Prot
	SSF50044	UniProtKB/Swiss-Prot
UniProt	A0A0G2K714	ENTREZGENE
	A0A8I5ZL78	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ADA0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AKY2	ENTREZGENE, UniProtKB/TrEMBL
	A6HW96	ENTREZGENE, UniProtKB/TrEMBL
	Q6AYE2	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-04	Sh3glb1	SH3 domain -containing GRB2-like endophilin B1	Sh3glb1	SH3-domain GRB2-like endophilin B1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-11-04	Sh3glb1	SH3-domain GRB2-like endophilin B1	Sh3glb1	SH3-domain GRB2-like B1 (endophilin)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Sh3glb1	SH3-domain GRB2-like B1 (endophilin)	Sh3glb1_predicted	SH3-domain GRB2-like B1 (endophilin) (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Sh3glb1_predicted	SH3-domain GRB2-like B1 (endophilin) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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RGD Manual Annotations

Imported Annotations - KEGG (archival)