Agpat1 (1-acylglycerol-3-phosphate O-acyltransferase 1) - Rat Genome Database

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Gene: Agpat1 (1-acylglycerol-3-phosphate O-acyltransferase 1) Rattus norvegicus
Analyze
Symbol: Agpat1
Name: 1-acylglycerol-3-phosphate O-acyltransferase 1
RGD ID: 1303287
Description: Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Predicted to be involved in phosphatidic acid biosynthetic process and positive regulation of cytokine production. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human AGPAT1 (1-acylglycerol-3-phosphate O-acyltransferase 1); PARTICIPATES IN D-glycericacidemia pathway; familial lipoprotein lipase deficiency pathway; glycerol kinase deficiency pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 3-chloropropane-1,2-diol; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha; 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha); MGC94573
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,140,565 - 4,149,531 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl204,140,565 - 4,150,445 (-)EnsemblGRCr8
mRatBN7.2204,135,955 - 4,144,880 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,135,957 - 4,145,278 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx204,842,454 - 4,849,822 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,204,206 - 4,211,574 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,735,130 - 4,742,483 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,369,399 - 4,378,272 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,369,178 - 4,378,269 (+)Ensemblrn6Rnor6.0
Rnor_5.0206,448,755 - 6,457,628 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4204,237,798 - 4,245,723 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera203,886,956 - 3,894,297 (+)NCBICelera
RGSC_v3.1204,238,024 - 4,245,950 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
endoplasmic reticulum  (IBA,IEA,ISO,ISS)
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9212163   PMID:9299423   PMID:9461603   PMID:12477932   PMID:19946888   PMID:21873652  


Genomics

Comparative Map Data
Agpat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,140,565 - 4,149,531 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl204,140,565 - 4,150,445 (-)EnsemblGRCr8
mRatBN7.2204,135,955 - 4,144,880 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,135,957 - 4,145,278 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx204,842,454 - 4,849,822 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,204,206 - 4,211,574 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,735,130 - 4,742,483 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,369,399 - 4,378,272 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,369,178 - 4,378,269 (+)Ensemblrn6Rnor6.0
Rnor_5.0206,448,755 - 6,457,628 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4204,237,798 - 4,245,723 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera203,886,956 - 3,894,297 (+)NCBICelera
RGSC_v3.1204,238,024 - 4,245,950 (-)NCBI
Cytogenetic Map20p12NCBI
AGPAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38632,168,212 - 32,178,108 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl632,168,205 - 32,178,096 (-)Ensemblhg38GRCh38
GRCh37632,135,989 - 32,145,885 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,243,967 - 32,253,820 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34632,243,967 - 32,253,820NCBI
Celera633,703,030 - 33,712,935 (-)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef631,890,182 - 31,900,086 (-)NCBIHuRef
CHM1_1632,138,467 - 32,148,372 (-)NCBICHM1_1
T2T-CHM13v2.0632,021,403 - 32,031,299 (-)NCBIT2T-CHM13v2.0
Agpat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,823,164 - 34,832,392 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,823,236 - 34,832,423 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381734,604,195 - 34,613,449 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,604,262 - 34,613,449 (+)Ensemblmm10GRCm38
MGSCv371734,742,806 - 34,750,394 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361734,217,070 - 34,221,505 (+)NCBIMGSCv36mm8
Celera1737,701,020 - 37,708,622 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.18NCBI
Agpat1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437633,522 - 640,838 (-)Ensembl
ChiLan1.0NW_004955437633,522 - 642,659 (-)NCBIChiLan1.0ChiLan1.0
AGPAT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,631,264 - 46,639,027 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,592,747 - 42,600,509 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,815,586 - 31,823,526 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,695,475 - 32,704,635 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,695,475 - 32,704,432 (-)EnsemblpanPan2panpan1.1
AGPAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,561,494 - 1,570,754 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,558,684 - 1,568,962 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha121,695,189 - 1,704,430 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0121,699,692 - 1,708,940 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,699,695 - 1,707,218 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,562,731 - 1,571,970 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,628,340 - 1,637,586 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,694,655 - 1,703,904 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Agpat1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494636,126,425 - 36,135,579 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,426,857 - 1,434,921 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,425,784 - 1,434,921 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGPAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl724,204,905 - 24,215,108 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1724,205,930 - 24,208,430 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2728,025,727 - 28,035,735 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AGPAT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,854,196 - 39,864,077 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1739,855,010 - 39,863,710 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604432,067,655 - 32,077,548 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Agpat1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,145,919 - 24,155,278 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475424,145,349 - 24,151,731 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Agpat1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1187,287,171 - 7,295,817 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Agpat1
38 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:80
Interacting mature miRNAs:100
Transcripts:ENSRNOT00000000500
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
BF390804  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,136,626 - 4,136,811 (-)MAPPERmRatBN7.2
Rnor_6.0204,377,418 - 4,377,602NCBIRnor6.0
Rnor_5.0206,456,774 - 6,456,958UniSTSRnor5.0
RGSC_v3.4204,238,468 - 4,238,652UniSTSRGSC3.4
Celera203,893,443 - 3,893,627UniSTS
RH 3.4 Map2053.1UniSTS
Cytogenetic Map20p12UniSTS
BI284306  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,136,385 - 4,136,591 (-)MAPPERmRatBN7.2
Rnor_6.0204,377,638 - 4,377,843NCBIRnor6.0
Rnor_5.0206,456,994 - 6,457,199UniSTSRnor5.0
RGSC_v3.4204,238,227 - 4,238,432UniSTSRGSC3.4
Celera203,893,663 - 3,893,868UniSTS
RH 3.4 Map2053.02UniSTS
Cytogenetic Map20p12UniSTS
RH135211  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,136,183 - 4,136,397 (-)MAPPERmRatBN7.2
Rnor_6.0204,377,832 - 4,378,045NCBIRnor6.0
Rnor_5.0206,457,188 - 6,457,401UniSTSRnor5.0
RGSC_v3.4204,238,025 - 4,238,238UniSTSRGSC3.4
Celera203,893,857 - 3,894,070UniSTS
RH 3.4 Map2053.33UniSTS
Cytogenetic Map20p12UniSTS
RH139384  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,135,796 - 4,136,000 (-)MAPPERmRatBN7.2
Rnor_6.0204,378,229 - 4,378,432NCBIRnor6.0
Rnor_5.0206,457,585 - 6,457,788UniSTSRnor5.0
RGSC_v3.4204,237,638 - 4,237,841UniSTSRGSC3.4
Celera203,894,254 - 3,894,457UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000500   ⟹   ENSRNOP00000000500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl204,140,565 - 4,150,445 (-)Ensembl
mRatBN7.2 Ensembl204,135,957 - 4,145,278 (-)Ensembl
Rnor_6.0 Ensembl204,371,023 - 4,378,269 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000084557   ⟹   ENSRNOP00000072184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,374,807 - 4,376,294 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088079   ⟹   ENSRNOP00000072161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,369,178 - 4,377,495 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088734   ⟹   ENSRNOP00000070829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,369,394 - 4,375,732 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091491   ⟹   ENSRNOP00000069153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl204,369,404 - 4,376,565 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120347   ⟹   ENSRNOP00000098036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl204,140,565 - 4,147,868 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120348   ⟹   ENSRNOP00000098037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl204,140,565 - 4,148,558 (-)Ensembl
RefSeq Acc Id: NM_212458   ⟹   NP_997623
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,140,565 - 4,147,868 (-)NCBI
mRatBN7.2204,135,957 - 4,143,260 (-)NCBI
Rnor_6.0204,370,969 - 4,378,272 (+)NCBI
Rnor_5.0206,448,755 - 6,457,628 (+)NCBI
RGSC_v3.4204,237,798 - 4,245,723 (-)RGD
Celera203,886,956 - 3,894,297 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255974   ⟹   XP_006256036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,140,568 - 4,149,515 (-)NCBI
mRatBN7.2204,135,955 - 4,144,880 (-)NCBI
Rnor_6.0204,369,409 - 4,378,269 (+)NCBI
Rnor_5.0206,448,755 - 6,457,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255975   ⟹   XP_006256037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,140,568 - 4,149,208 (-)NCBI
mRatBN7.2204,135,955 - 4,144,880 (-)NCBI
Rnor_6.0204,369,399 - 4,378,269 (+)NCBI
Rnor_5.0206,448,755 - 6,457,628 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098932   ⟹   XP_038954860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,140,568 - 4,149,515 (-)NCBI
mRatBN7.2204,135,955 - 4,144,319 (-)NCBI
RefSeq Acc Id: XM_063279349   ⟹   XP_063135419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,140,568 - 4,149,515 (-)NCBI
RefSeq Acc Id: XM_063279350   ⟹   XP_063135420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,140,568 - 4,149,515 (-)NCBI
RefSeq Acc Id: XM_063279352   ⟹   XP_063135422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,140,568 - 4,149,531 (-)NCBI
RefSeq Acc Id: NP_997623   ⟸   NM_212458
- UniProtKB: Q6MG85 (UniProtKB/TrEMBL),   Q5U2V3 (UniProtKB/TrEMBL),   A6KTH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256037   ⟸   XM_006255975
- Peptide Label: isoform X2
- UniProtKB: Q6MG85 (UniProtKB/TrEMBL),   Q5U2V3 (UniProtKB/TrEMBL),   A6KTH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256036   ⟸   XM_006255974
- Peptide Label: isoform X2
- UniProtKB: Q6MG85 (UniProtKB/TrEMBL),   Q5U2V3 (UniProtKB/TrEMBL),   A6KTH1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072184   ⟸   ENSRNOT00000084557
Ensembl Acc Id: ENSRNOP00000000500   ⟸   ENSRNOT00000000500
Ensembl Acc Id: ENSRNOP00000069153   ⟸   ENSRNOT00000091491
Ensembl Acc Id: ENSRNOP00000072161   ⟸   ENSRNOT00000088079
Ensembl Acc Id: ENSRNOP00000070829   ⟸   ENSRNOT00000088734
RefSeq Acc Id: XP_038954860   ⟸   XM_039098932
- Peptide Label: isoform X2
- UniProtKB: Q6MG85 (UniProtKB/TrEMBL),   Q5U2V3 (UniProtKB/TrEMBL),   A6KTH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135422   ⟸   XM_063279352
- Peptide Label: isoform X1
- UniProtKB: F7EQT9 (UniProtKB/TrEMBL),   A6KTH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135419   ⟸   XM_063279349
- Peptide Label: isoform X1
- UniProtKB: F7EQT9 (UniProtKB/TrEMBL),   A6KTH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135420   ⟸   XM_063279350
- Peptide Label: isoform X1
- UniProtKB: F7EQT9 (UniProtKB/TrEMBL),   A6KTH1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000098036   ⟸   ENSRNOT00000120347
Ensembl Acc Id: ENSRNOP00000098037   ⟸   ENSRNOT00000120348
Protein Domains
Phospholipid/glycerol acyltransferase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MG85-F1-model_v2 AlphaFold Q6MG85 1-284 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701346
Promoter ID:EPDNEW_R11866
Type:initiation region
Name:Agpat1_2
Description:1-acylglycerol-3-phosphate O-acyltransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11867  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,369,405 - 4,369,465EPDNEW
RGD ID:13701343
Promoter ID:EPDNEW_R11867
Type:initiation region
Name:Agpat1_1
Description:1-acylglycerol-3-phosphate O-acyltransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11866  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,370,969 - 4,371,029EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303287 AgrOrtholog
BioCyc Gene G2FUF-4586 BioCyc
BioCyc Pathway PWY-5667 [CDP-diacylglycerol biosynthesis I] BioCyc
  PWY-7411 [phosphatidate biosynthesis (yeast)] BioCyc
  PWY-7417 [phospholipid remodeling (phosphatidate, yeast)] BioCyc
  PWY-7782 [plasmalogen biosynthesis] BioCyc
  PWY-8053 [anandamide biosynthesis II] BioCyc
  TRIGLSYN-PWY [diacylglycerol and triacylglycerol biosynthesis] BioCyc
BioCyc Pathway Image PWY-5667 BioCyc
  PWY-7411 BioCyc
  PWY-7417 BioCyc
  PWY-7782 BioCyc
  PWY-8053 BioCyc
  TRIGLSYN-PWY BioCyc
Ensembl Genes ENSRNOG00000000437 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000500.9 UniProtKB/TrEMBL
  ENSRNOT00000120347 ENTREZGENE
  ENSRNOT00000120347.2 UniProtKB/TrEMBL
  ENSRNOT00000120348 ENTREZGENE
  ENSRNOT00000120348.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7189891 IMAGE-MGC_LOAD
InterPro Acyltransferase UniProtKB/TrEMBL
  AGP_acyltrans UniProtKB/TrEMBL
KEGG Report rno:406165 UniProtKB/TrEMBL
MGC_CLONE MGC:94573 IMAGE-MGC_LOAD
NCBI Gene 406165 ENTREZGENE
PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE UniProtKB/TrEMBL
  1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE ALPHA UniProtKB/TrEMBL
Pfam Acyltransferase UniProtKB/TrEMBL
PhenoGen Agpat1 PhenoGen
RatGTEx ENSRNOG00000000437 RatGTEx
SMART PlsC UniProtKB/TrEMBL
Superfamily-SCOP Glycerol-3-phosphate (1)-acyltransferase UniProtKB/TrEMBL
UniProt A0ABK0L437_RAT UniProtKB/TrEMBL
  A6KTH1 ENTREZGENE, UniProtKB/TrEMBL
  F7EQT9 ENTREZGENE, UniProtKB/TrEMBL
  Q5U2V3 ENTREZGENE, UniProtKB/TrEMBL
  Q6MG85 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-13 Agpat1  1-acylglycerol-3-phosphate O-acyltransferase 1  Agpat1  1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-26 Agpat1  1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)  Agpat1  1-acylglycerol-3-phosphate O-acyltransferase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 Agpat1        Symbol and Name status set to provisional 70820 PROVISIONAL