Polr1h (RNA polymerase I subunit H) - Rat Genome Database

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Gene: Polr1h (RNA polymerase I subunit H) Rattus norvegicus
Analyze
Symbol: Polr1h
Name: RNA polymerase I subunit H
RGD ID: 1303114
Description: Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to contribute to DNA-directed RNA polymerase activity. Predicted to be involved in termination of RNA polymerase I transcription. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of RNA polymerase I complex. Orthologous to human POLR1H (RNA polymerase I subunit H); PARTICIPATES IN RNA polymerase I transcription pathway; purine metabolic pathway; pyrimidine metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DNA-directed RNA polymerase I subunit H; DNA-directed RNA polymerase I subunit RPA12; HTEX-6; nuclear RNA polymerase I small specific subunit Rpa12 like; Tctex6; zinc ribbon domain containing 1; zinc ribbon domain containing, 1; zinc ribbon domain-containing protein 1; Znrd1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Znrd1-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,600,170 - 1,604,088 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl201,595,945 - 1,604,088 (+)EnsemblGRCr8
mRatBN7.2201,594,936 - 1,598,854 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,594,936 - 1,598,854 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx201,647,698 - 1,651,624 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,651,195 - 1,655,121 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,592,702 - 1,596,588 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0202,088,518 - 2,092,436 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl202,088,533 - 2,092,436 (+)Ensemblrn6Rnor6.0
Rnor_5.0204,125,232 - 4,129,150 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4201,687,673 - 1,691,591 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera202,303,510 - 2,307,419 (+)NCBICelera
RGSC_v3.1201,687,849 - 1,691,468 (+)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-phenylbutyric acid  (ISO)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (ISO)
calyculin A  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
etoposide  (ISO)
flutamide  (EXP)
folic acid  (ISO)
folpet  (ISO)
fulvestrant  (ISO)
hydrogen peroxide  (ISO)
lead diacetate  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methotrexate  (ISO)
nitrates  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
sirolimus  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
tolcapone  (EXP)
valproic acid  (ISO)
verapamil  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
XL147  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Suppression of the cell proliferation in stomach cancer cells by the ZNRD1 gene. Hong L, etal., Biochem Biophys Res Commun 2004 Aug 27;321(3):611-6.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. RNA polymerase I activity is regulated at multiple steps in the transcription cycle: recent insights into factors that influence transcription elongation. Schneider DA Gene. 2012 Feb 10;493(2):176-84. doi: 10.1016/j.gene.2011.08.006. Epub 2011 Aug 26.
10. Conservation between the RNA polymerase I, II, and III transcription initiation machineries. Vannini A and Cramer P, Mol Cell. 2012 Feb 24;45(4):439-46. doi: 10.1016/j.molcel.2012.01.023.
Additional References at PubMed
PMID:15060004  


Genomics

Comparative Map Data
Polr1h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,600,170 - 1,604,088 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl201,595,945 - 1,604,088 (+)EnsemblGRCr8
mRatBN7.2201,594,936 - 1,598,854 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,594,936 - 1,598,854 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx201,647,698 - 1,651,624 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,651,195 - 1,655,121 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,592,702 - 1,596,588 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0202,088,518 - 2,092,436 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl202,088,533 - 2,092,436 (+)Ensemblrn6Rnor6.0
Rnor_5.0204,125,232 - 4,129,150 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4201,687,673 - 1,691,591 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera202,303,510 - 2,307,419 (+)NCBICelera
RGSC_v3.1201,687,849 - 1,691,468 (+)NCBI
Cytogenetic Map20p12NCBI
POLR1H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38630,060,062 - 30,064,907 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl630,058,899 - 30,064,909 (+)Ensemblhg38GRCh38
GRCh37630,029,042 - 30,032,684 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36630,137,015 - 30,140,665 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34630,137,014 - 30,140,664NCBI
Celera631,627,294 - 31,630,939 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,827,192 - 29,830,858 (+)NCBIHuRef
CHM1_1630,031,066 - 30,034,735 (+)NCBICHM1_1
T2T-CHM13v2.0629,925,545 - 29,929,181 (+)NCBIT2T-CHM13v2.0
Polr1h
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,265,250 - 37,269,417 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,265,248 - 37,269,451 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381736,954,358 - 36,958,525 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1736,954,356 - 36,958,559 (-)Ensemblmm10GRCm38
MGSCv371737,091,303 - 37,095,373 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361736,562,411 - 36,566,481 (-)NCBIMGSCv36mm8
Celera1740,377,895 - 40,381,965 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
Polr1h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583191,564 - 195,358 (+)Ensembl
ChiLan1.0NW_004955583191,252 - 195,563 (+)NCBIChiLan1.0ChiLan1.0
POLR1H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2544,654,673 - 44,658,296 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1640,617,667 - 40,621,308 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0629,839,067 - 29,842,692 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1630,509,326 - 30,512,956 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,509,326 - 30,512,956 (+)EnsemblpanPan2panpan1.1
POLR1H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13526,285,520 - 26,288,550 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3526,285,538 - 26,288,534 (+)EnsemblcanFam3CanFam3.1
ROS_Cfam_1.03526,594,054 - 26,597,115 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3526,594,101 - 26,597,098 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13526,248,647 - 26,251,702 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03526,309,259 - 26,312,356 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03527,779,521 - 27,782,596 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Polr1h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494632,608,011 - 32,612,807 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936723978,613 - 984,405 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936723979,076 - 983,814 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR1H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,626,846 - 22,631,555 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1722,626,871 - 22,631,557 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2725,156,351 - 25,161,054 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLR1H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11742,434,992 - 42,438,993 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1742,435,196 - 42,438,981 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604429,716,158 - 29,720,178 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polr1h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475425,340,155 - 25,344,380 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475425,340,498 - 25,344,032 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Polr1h
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1189,932,459 - 9,936,474 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Polr1h
13 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:23
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000001012
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013629303Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
D20Ulb1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2201,597,300 - 1,597,521 (+)MAPPERmRatBN7.2
Rnor_6.0202,090,883 - 2,091,103NCBIRnor6.0
Rnor_5.0204,127,597 - 4,127,817UniSTSRnor5.0
RGSC_v3.4201,690,038 - 1,690,258UniSTSRGSC3.4
Celera202,305,875 - 2,306,086UniSTS
Cytogenetic Map20p12UniSTS
RH140528  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2201,593,497 - 1,593,724 (+)MAPPERmRatBN7.2
Rnor_6.0202,087,080 - 2,087,306NCBIRnor6.0
Rnor_5.0204,123,794 - 4,124,020UniSTSRnor5.0
RGSC_v3.4201,686,235 - 1,686,461UniSTSRGSC3.4
Celera202,302,072 - 2,302,298UniSTS
RH 3.4 Map202.8UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001012   ⟹   ENSRNOP00000001012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl201,600,102 - 1,604,084 (+)Ensembl
mRatBN7.2 Ensembl201,594,936 - 1,598,854 (+)Ensembl
Rnor_6.0 Ensembl202,088,533 - 2,092,433 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl202,089,061 - 2,092,436 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079021   ⟹   ENSRNOP00000071935
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl201,594,939 - 1,598,854 (+)Ensembl
Rnor_6.0 Ensembl202,088,681 - 2,092,433 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl202,091,918 - 2,092,436 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087098   ⟹   ENSRNOP00000069200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl202,088,775 - 2,092,420 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120491   ⟹   ENSRNOP00000098151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl201,595,945 - 1,604,088 (+)Ensembl
RefSeq Acc Id: NM_001166300   ⟹   NP_001159772
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8201,600,170 - 1,604,088 (+)NCBI
mRatBN7.2201,594,936 - 1,598,854 (+)NCBI
Rnor_6.0202,088,518 - 2,092,436 (+)NCBI
Rnor_5.0204,125,232 - 4,129,150 (+)NCBI
RGSC_v3.4201,687,673 - 1,691,591 (+)RGD
Celera202,303,510 - 2,307,419 (+)RGD
Sequence:
RefSeq Acc Id: NM_213567   ⟹   NP_998732
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8201,600,333 - 1,604,088 (+)NCBI
mRatBN7.2201,595,099 - 1,598,854 (+)NCBI
Rnor_6.0202,088,681 - 2,092,436 (+)NCBI
Rnor_5.0204,125,232 - 4,129,150 (+)NCBI
RGSC_v3.4201,687,673 - 1,691,591 (+)RGD
Celera202,303,673 - 2,307,419 (+)NCBI
Sequence:
RefSeq Acc Id: NP_998732   ⟸   NM_213567
- UniProtKB: Q6MFY5 (UniProtKB/Swiss-Prot),   A6KR74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001159772   ⟸   NM_001166300
- UniProtKB: Q6MFY5 (UniProtKB/Swiss-Prot),   A6KR74 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071935   ⟸   ENSRNOT00000079021
Ensembl Acc Id: ENSRNOP00000069200   ⟸   ENSRNOT00000087098
Ensembl Acc Id: ENSRNOP00000001012   ⟸   ENSRNOT00000001012
Ensembl Acc Id: ENSRNOP00000098151   ⟸   ENSRNOT00000120491
Protein Domains
TFIIS-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MFY5-F1-model_v2 AlphaFold Q6MFY5 1-123 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701272
Promoter ID:EPDNEW_R11796
Type:multiple initiation site
Name:Znrd1_1
Description:zinc ribbon domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0202,088,511 - 2,088,571EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303114 AgrOrtholog
BioCyc Gene G2FUF-4979 BioCyc
Ensembl Genes ENSRNOG00000000779 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001012 ENTREZGENE
  ENSRNOT00000001012.6 UniProtKB/Swiss-Prot
  ENSRNOT00000120491 ENTREZGENE
Gene3D-CATH 2.20.25.10 UniProtKB/Swiss-Prot
InterPro DNA-dir_RNA_pol-M_15_CS UniProtKB/Swiss-Prot
  Rpa12/Rpb9/Rpc10/TFS UniProtKB/Swiss-Prot
  Zn_ribbon_RPA12_C UniProtKB/Swiss-Prot
  Znf_TFIIS UniProtKB/Swiss-Prot
KEGG Report rno:361784 UniProtKB/Swiss-Prot
NCBI Gene 361784 ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12 UniProtKB/Swiss-Prot
  PTHR11239 UniProtKB/Swiss-Prot
Pfam TFIIS_C UniProtKB/Swiss-Prot
PhenoGen Polr1h PhenoGen
PIRSF RNApol_RpoM UniProtKB/Swiss-Prot
PROSITE RNA_POL_M_15KD UniProtKB/Swiss-Prot
  ZF_TFIIS_1 UniProtKB/Swiss-Prot
  ZF_TFIIS_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000779 RatGTEx
SMART ZnF_C2C2 UniProtKB/Swiss-Prot
Superfamily-SCOP Zinc beta-ribbon UniProtKB/Swiss-Prot
UniProt A0ABK0L366_RAT UniProtKB/TrEMBL
  A6KR74 ENTREZGENE, UniProtKB/TrEMBL
  Q6MFY5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-04-28 Polr1h  RNA polymerase I subunit H  Znrd1  zinc ribbon domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-03-23 Znrd1  zinc ribbon domain containing 1  Znrd1  zinc ribbon domain containing, 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-02-14 Znrd1  zinc ribbon domain containing, 1      Symbol and Name status set to provisional 70820 PROVISIONAL