Snu13 (small nuclear ribonucleoprotein 13) - Rat Genome Database

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Gene: Snu13 (small nuclear ribonucleoprotein 13) Rattus norvegicus
Analyze
Symbol: Snu13
Name: small nuclear ribonucleoprotein 13
RGD ID: 1303103
Description: Predicted to enable ATPase binding activity and RNA binding activity. Predicted to contribute to snoRNA binding activity. Predicted to be involved in box C/D snoRNP assembly; mRNA splicing, via spliceosome; and maturation of SSU-rRNA. Predicted to act upstream of or within single fertilization. Predicted to be located in dense fibrillar component. Predicted to be part of several cellular components, including U2-type precatalytic spliceosome; box C/D methylation guide snoRNP complex; and spliceosomal snRNP complex. Predicted to be active in nucleolus. Orthologous to human SNU13 (small nuclear ribonucleoprotein 13); PARTICIPATES IN ribosome biogenesis pathway; spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: high mobility group-like nuclear protein 2 homolog 1; MGC72932; NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae); NHP2-like protein 1; Nhp2l1; Otk27; similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (OTK27); SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5); U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 tri-snRNP 15.5 kDa protein; U4/U6.U5] tri-snRNP 15.5 kDa protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Snu13-ps5  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,445,415 - 115,451,008 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1269,702,002 - 269,703,004 (+)EnsemblGRCr8
GRCr8 Ensembl7115,445,415 - 115,458,026 (-)EnsemblGRCr8
mRatBN7.27113,565,293 - 113,570,887 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1259,715,711 - 259,716,758 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl7113,565,295 - 113,570,872 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7115,321,804 - 115,327,398 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,545,304 - 117,550,897 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,514,748 - 117,520,342 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,282,754 - 123,287,721 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,282,754 - 123,287,721 (-)Ensemblrn6Rnor6.0
Rnor_5.07123,267,419 - 123,272,386 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47120,425,064 - 120,430,031 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7109,881,746 - 109,886,713 (-)NCBICelera
RGSC_v3.17120,459,293 - 120,464,261 (-)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-azacytidine  (ISO)
7,12-dimethyltetraphene  (ISO)
acrolein  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
disodium selenite  (ISO)
elemental selenium  (ISO)
emodin  (ISO)
endosulfan  (EXP)
ethyl methanesulfonate  (ISO)
eugenol  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
glafenine  (EXP)
hydralazine  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
methyl methanesulfonate  (ISO)
miconazole  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
ozone  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
propiconazole  (ISO)
quinolin-8-ol  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
T-2 toxin  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trimellitic anhydride  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
Yessotoxin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8. The spliceosome: design principles of a dynamic RNP machine. Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.
9. The box C/D and H/ACA snoRNPs: key players in the modification, processing and the dynamic folding of ribosomal RNA. Watkins NJ and Bohnsack MT, Wiley Interdiscip Rev RNA. 2012 May-Jun;3(3):397-414. doi: 10.1002/wrna.117. Epub 2011 Nov 7.
Additional References at PubMed
PMID:7667285   PMID:9114055   PMID:10593953   PMID:11081632   PMID:11842104   PMID:15489334   PMID:16857676   PMID:17636026   PMID:21784869   PMID:22658674   PMID:22681889   PMID:26912367  
PMID:28781166   PMID:35352799  


Genomics

Comparative Map Data
Snu13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,445,415 - 115,451,008 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1269,702,002 - 269,703,004 (+)EnsemblGRCr8
GRCr8 Ensembl7115,445,415 - 115,458,026 (-)EnsemblGRCr8
mRatBN7.27113,565,293 - 113,570,887 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1259,715,711 - 259,716,758 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl7113,565,295 - 113,570,872 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7115,321,804 - 115,327,398 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,545,304 - 117,550,897 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,514,748 - 117,520,342 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07123,282,754 - 123,287,721 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7123,282,754 - 123,287,721 (-)Ensemblrn6Rnor6.0
Rnor_5.07123,267,419 - 123,272,386 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47120,425,064 - 120,430,031 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7109,881,746 - 109,886,713 (-)NCBICelera
RGSC_v3.17120,459,293 - 120,464,261 (-)NCBI
Cytogenetic Map7q34NCBI
SNU13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,673,933 - 41,690,480 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,673,933 - 41,690,504 (-)Ensemblhg38GRCh38
GRCh372242,069,937 - 42,084,871 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,399,883 - 40,414,859 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342240,394,437 - 40,403,056NCBI
Celera2225,876,373 - 25,891,348 (-)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2225,035,346 - 25,050,319 (-)NCBIHuRef
CHM1_12242,029,949 - 42,044,925 (-)NCBICHM1_1
T2T-CHM13v2.02242,152,913 - 42,169,470 (-)NCBIT2T-CHM13v2.0
Snu13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,925,546 - 81,931,799 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,924,726 - 81,931,799 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381582,041,345 - 82,047,598 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1582,040,525 - 82,047,598 (-)Ensemblmm10GRCm38
MGSCv371581,871,775 - 81,878,028 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361581,868,600 - 81,874,853 (-)NCBIMGSCv36mm8
Celera1584,163,054 - 84,169,281 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.38NCBI
Snu13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541327,159,816 - 27,172,696 (-)Ensembl
ChiLan1.0NW_00495541327,160,985 - 27,172,648 (-)NCBIChiLan1.0ChiLan1.0
SNU13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,503,689 - 51,518,666 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12254,203,002 - 54,217,985 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,567,285 - 22,582,257 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,653,338 - 40,668,216 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2240,653,338 - 40,669,706 (-)EnsemblpanPan2panpan1.1
SNU13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,622,897 - 23,631,526 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,618,293 - 23,631,004 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1023,556,457 - 23,564,953 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01024,367,888 - 24,376,525 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,363,290 - 24,376,531 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11024,084,805 - 24,093,434 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,405,729 - 24,414,316 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,580,074 - 24,588,705 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Snu13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,279,382 - 7,285,470 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936492289,770 - 297,670 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936492289,834 - 295,883 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNU13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl56,885,067 - 6,900,022 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.156,891,014 - 6,900,026 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.254,262,171 - 4,271,206 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNU13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11924,209,356 - 24,223,431 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1924,206,653 - 24,216,686 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045101,189,312 - 101,204,220 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snu13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247526,972,618 - 6,985,033 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247526,972,557 - 6,985,033 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Snu13
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11251,780,717 - 251,786,276 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Snu13
18 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
RH127396  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1131,588,987 - 131,589,177UniSTS
Celera7109,881,290 - 109,881,505UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
25 13 75 192 117 114 69 101 69 12 411 222 11 159 87 116 45 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000009152   ⟹   ENSRNOP00000009152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7115,445,415 - 115,451,008 (-)Ensembl
mRatBN7.2 Ensembl7113,565,295 - 113,570,872 (-)Ensembl
Rnor_6.0 Ensembl7123,282,754 - 123,287,721 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000030108   ⟹   ENSRNOP00000051559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1269,702,002 - 269,703,004 (+)Ensembl
mRatBN7.2 Ensembl1259,715,711 - 259,716,758 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000122490   ⟹   ENSRNOP00000111005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7115,445,415 - 115,458,026 (-)Ensembl
RefSeq Acc Id: NM_212515   ⟹   NP_997680
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87115,445,415 - 115,451,008 (-)NCBI
mRatBN7.27113,565,293 - 113,570,887 (-)NCBI
Rnor_6.07123,282,754 - 123,287,721 (-)NCBI
Rnor_5.07123,267,419 - 123,272,386 (-)NCBI
RGSC_v3.47120,425,064 - 120,430,031 (-)RGD
Celera7109,881,746 - 109,886,713 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_997680 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58493 (Get FASTA)   NCBI Sequence Viewer  
  EDM15678 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009152
  ENSRNOP00000009152.4
  ENSRNOP00000051559.2
GenBank Protein P55770 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_997680   ⟸   NM_212515
- UniProtKB: Q6PDV0 (UniProtKB/Swiss-Prot),   P55770 (UniProtKB/Swiss-Prot),   A6HT44 (UniProtKB/TrEMBL),   A6HT43 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009152   ⟸   ENSRNOT00000009152
Ensembl Acc Id: ENSRNOP00000051559   ⟸   ENSRNOT00000030108
Ensembl Acc Id: ENSRNOP00000111005   ⟸   ENSRNOT00000122490
Protein Domains
Ribosomal protein eL8/eL30/eS12/Gadd45

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P55770-F1-model_v2 AlphaFold P55770 1-128 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695526
Promoter ID:EPDNEW_R6050
Type:initiation region
Name:Snu13_1
Description:small nuclear ribonucleoprotein 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07123,287,707 - 123,287,767EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303103 AgrOrtholog
BioCyc Gene G2FUF-32647 BioCyc
Ensembl Genes ENSRNOG00000006762 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000025154 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009152 ENTREZGENE
  ENSRNOT00000009152.6 UniProtKB/Swiss-Prot
  ENSRNOT00000030108.6 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.1330.30 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887059 IMAGE-MGC_LOAD
InterPro eL8_RNA-proc_assembly UniProtKB/Swiss-Prot
  H/ACA_rnp_Nhp2_euk UniProtKB/Swiss-Prot
  L30e-like UniProtKB/Swiss-Prot
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/Swiss-Prot
  Ribosomal_L7Ae/L8/Nhp2 UniProtKB/Swiss-Prot
  Ribosomal_L7Ae_CS UniProtKB/Swiss-Prot
KEGG Report rno:300092 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72932 IMAGE-MGC_LOAD
NCBI Gene 300092 ENTREZGENE
PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER UniProtKB/Swiss-Prot
Pfam Ribosomal_L7Ae UniProtKB/Swiss-Prot
PhenoGen Snu13 PhenoGen
PRINTS L7ARS6FAMILY UniProtKB/Swiss-Prot
  NUCLEARHMG UniProtKB/Swiss-Prot
PROSITE RIBOSOMAL_L7AE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000006762 RatGTEx
  ENSRNOG00000025154 RatGTEx
Superfamily-SCOP SSF55315 UniProtKB/Swiss-Prot
UniProt A0ABK0LJE6_RAT UniProtKB/TrEMBL
  A6HT43 ENTREZGENE, UniProtKB/TrEMBL
  A6HT44 ENTREZGENE, UniProtKB/TrEMBL
  NH2L1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6PDV0 ENTREZGENE
UniProt Secondary Q6PDV0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-27 Snu13  small nuclear ribonucleoprotein 13  Snu13  SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-16 Snu13  SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)  Nhp2l1  NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-23 Nhp2l1  NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)  MGC72932  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (OTK27)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 MGC72932        Symbol and Name status set to provisional 70820 PROVISIONAL