Gpsm3 (G-protein signaling modulator 3) - Rat Genome Database

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Gene: Gpsm3 (G-protein signaling modulator 3) Rattus norvegicus
Analyze
Symbol: Gpsm3 (Ensembl: Notch4)
Name: G-protein signaling modulator 3 (Ensembl:notch receptor 4)
RGD ID: 1303014
Description: Predicted to enable GTPase regulator activity. Predicted to be involved in positive regulation of inflammatory response. Predicted to act upstream of or within positive regulation of cytokine production involved in inflammatory response and positive regulation of leukocyte chemotaxis. Predicted to be located in plasma membrane. Orthologous to human GPSM3 (G protein signaling modulator 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: activator of G-protein signalling 4; AGS4; G-protein signaling modulator 3 (AGS3-like, C. elegans); G-protein signalling modulator 3 (AGS3-like, C. elegans); G-protein-signaling modulator 3; G18; MGC108946; Ng1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,161,730 - 4,163,591 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl204,161,730 - 4,189,072 (-)EnsemblGRCr8
mRatBN7.2204,157,123 - 4,158,984 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,157,123 - 4,159,035 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx204,863,725 - 4,865,586 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,225,477 - 4,227,338 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,756,372 - 4,758,233 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,355,246 - 4,357,107 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,355,175 - 4,357,107 (+)Ensemblrn6Rnor6.0
Rnor_5.0206,434,602 - 6,436,463 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4204,259,883 - 4,261,744 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera203,871,297 - 3,873,158 (+)NCBICelera
RGSC_v3.1204,260,109 - 4,261,971 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Identification and characterization of AGS4: a protein containing three G-protein regulatory motifs that regulate the activation state of Gialpha. Cao X, etal., J Biol Chem 2004 Jun 25;279(26):27567-74. Epub 2004 Apr 19.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15060004   PMID:15489334   PMID:23280397  


Genomics

Comparative Map Data
Gpsm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8204,161,730 - 4,163,591 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl204,161,730 - 4,189,072 (-)EnsemblGRCr8
mRatBN7.2204,157,123 - 4,158,984 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,157,123 - 4,159,035 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx204,863,725 - 4,865,586 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0204,225,477 - 4,227,338 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,756,372 - 4,758,233 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,355,246 - 4,357,107 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,355,175 - 4,357,107 (+)Ensemblrn6Rnor6.0
Rnor_5.0206,434,602 - 6,436,463 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4204,259,883 - 4,261,744 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera203,871,297 - 3,873,158 (+)NCBICelera
RGSC_v3.1204,260,109 - 4,261,971 (-)NCBI
Cytogenetic Map20p12NCBI
GPSM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38632,190,766 - 32,195,523 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl632,190,766 - 32,195,523 (-)Ensemblhg38GRCh38
GRCh37632,158,543 - 32,163,300 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,266,521 - 32,271,278 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34632,266,521 - 32,271,278NCBI
Celera633,725,587 - 33,730,344 (-)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef631,912,738 - 31,917,495 (-)NCBIHuRef
CHM1_1632,161,027 - 32,165,784 (-)NCBICHM1_1
T2T-CHM13v2.0632,043,955 - 32,048,712 (-)NCBIT2T-CHM13v2.0
Gpsm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,808,780 - 34,810,728 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,808,780 - 34,810,728 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381734,589,806 - 34,591,754 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,589,806 - 34,591,754 (+)Ensemblmm10GRCm38
MGSCv371734,726,751 - 34,728,699 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361734,198,001 - 34,199,808 (+)NCBIMGSCv36mm8
Celera1737,684,966 - 37,686,914 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.17NCBI
Gpsm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437654,475 - 656,335 (-)Ensembl
ChiLan1.0NW_004955437654,475 - 656,335 (-)NCBIChiLan1.0ChiLan1.0
GPSM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,653,836 - 46,659,883 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,615,315 - 42,617,160 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,838,154 - 31,840,312 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,718,033 - 32,720,335 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,718,033 - 32,720,348 (-)EnsemblpanPan2panpan1.1
GPSM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,583,438 - 1,585,677 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,583,431 - 1,585,484 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha121,717,187 - 1,719,067 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0121,721,720 - 1,723,600 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,722,258 - 1,723,467 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,584,742 - 1,586,622 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,650,341 - 1,652,219 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,716,662 - 1,718,542 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gpsm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494636,148,848 - 36,150,959 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,410,380 - 1,412,477 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,410,194 - 1,412,496 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPSM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl724,227,575 - 24,229,797 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1724,227,572 - 24,229,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2728,048,460 - 28,050,665 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPSM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,839,010 - 39,841,213 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604432,090,534 - 32,092,689 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpsm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,129,812 - 24,132,333 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475424,130,303 - 24,132,332 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Gpsm3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1187,272,710 - 7,274,866 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gpsm3
20 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:39
Interacting mature miRNAs:51
Transcripts:ENSRNOT00000000510
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
RH133069  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2204,157,191 - 4,157,392 (-)MAPPERmRatBN7.2
Rnor_6.0204,356,838 - 4,357,038NCBIRnor6.0
Rnor_5.0206,436,194 - 6,436,394UniSTSRnor5.0
RGSC_v3.4204,259,952 - 4,260,152UniSTSRGSC3.4
Celera203,872,889 - 3,873,089UniSTS
RH 3.4 Map2052.92UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 92 59 6 356 192 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000000510   ⟹   ENSRNOP00000000510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,157,123 - 4,158,984 (-)Ensembl
Rnor_6.0 Ensembl204,355,175 - 4,357,107 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094807   ⟹   ENSRNOP00000097360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl204,157,123 - 4,159,035 (-)Ensembl
RefSeq Acc Id: NM_001003974   ⟹   NP_001003974
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8204,161,730 - 4,163,591 (-)NCBI
mRatBN7.2204,157,123 - 4,158,984 (-)NCBI
Rnor_6.0204,355,246 - 4,357,107 (+)NCBI
Rnor_5.0206,434,602 - 6,436,463 (+)NCBI
RGSC_v3.4204,259,883 - 4,261,744 (-)RGD
Celera203,871,297 - 3,873,158 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001003974 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88220 (Get FASTA)   NCBI Sequence Viewer  
  CAE83958 (Get FASTA)   NCBI Sequence Viewer  
  EDL83384 (Get FASTA)   NCBI Sequence Viewer  
  EDL83385 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000000510
  ENSRNOP00000000510.4
GenBank Protein Q6MG88 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001003974   ⟸   NM_001003974
- UniProtKB: Q6MG88 (UniProtKB/Swiss-Prot),   A6KTF4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000510   ⟸   ENSRNOT00000000510
Ensembl Acc Id: ENSRNOP00000097360   ⟸   ENSRNOT00000094807
Protein Domains
GoLoco

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MG88-F1-model_v2 AlphaFold Q6MG88 1-158 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701338
Promoter ID:EPDNEW_R11862
Type:initiation region
Name:Gpsm3_1
Description:G-protein signaling modulator 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0204,355,427 - 4,355,487EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303014 AgrOrtholog
BioCyc Gene G2FUF-4582 BioCyc
Ensembl Genes ENSRNOG00000000441 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000000442 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000000510 ENTREZGENE
  ENSRNOT00000000510.6 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7384543 IMAGE-MGC_LOAD
InterPro GoLoco_motif UniProtKB/Swiss-Prot
  GPSM3 UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:406163 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108946 IMAGE-MGC_LOAD
NCBI Gene 406163 ENTREZGENE
PANTHER G-PROTEIN-SIGNALING MODULATOR 3 UniProtKB/Swiss-Prot
  PTHR47617 UniProtKB/Swiss-Prot
Pfam GoLoco UniProtKB/Swiss-Prot
PhenoGen Gpsm3 PhenoGen
PROSITE GOLOCO UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000441 RatGTEx
  ENSRNOG00000000442 RatGTEx
SMART GoLoco UniProtKB/Swiss-Prot
UniProt A6KTF4 ENTREZGENE, UniProtKB/TrEMBL
  GPSM3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Gpsm3  G-protein signaling modulator 3  Gpsm3  G-protein signaling modulator 3 (AGS3-like, C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-30 Gpsm3  G-protein signaling modulator 3 (AGS3-like, C. elegans)  Gpsm3  G-protein signalling modulator 3 (AGS3-like, C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-04-05 Gpsm3  proteolipid protein (myelin) 1  Gpsm3_pend  G-protein signalling modulator 3 (AGS3-like, C. elegans)  Nomenclature status set to APPROVED 1299863 APPROVED
2005-01-04 Gpsm3  G-protein signalling modulator 3 (AGS3-like, C. elegans)  G18  G18 protein  Symbol and Name updated 1299863 PENDING