Zscan26 (zinc finger and SCAN domain containing 26) - Rat Genome Database

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Gene: Zscan26 (zinc finger and SCAN domain containing 26) Rattus norvegicus
Analyze
Symbol: Zscan26
Name: zinc finger and SCAN domain containing 26
RGD ID: 727885
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and nucleoplasm. Orthologous to human ZSCAN26 (zinc finger and SCAN domain containing 26); INTERACTS WITH 17beta-estradiol; 4,4'-sulfonyldiphenol; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Azf8; Zfp187; zinc finger and SCAN domain-containing protein 26; zinc finger protein 187; zinc finger protein 8; Znf187
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,843,822 - 47,863,799 (+)NCBIGRCr8
mRatBN7.21743,148,063 - 43,168,070 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1743,148,079 - 43,168,070 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1745,205,514 - 45,225,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01749,964,628 - 49,984,588 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01744,455,001 - 44,474,976 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01745,188,221 - 45,207,846 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1745,188,248 - 45,207,065 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01758,261,028 - 58,283,803 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41750,790,889 - 50,811,601 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11750,811,382 - 50,811,474 (+)NCBI
Celera1753,299,163 - 53,320,052 (-)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Identification and characterization of zinc finger encoding genes from the tumoral exocrine pancreatic cell line AR42J. Mesa K, etal., Cancer Lett 1996 Jun 5;103(2):143-9.
4. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zscan26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,843,822 - 47,863,799 (+)NCBIGRCr8
mRatBN7.21743,148,063 - 43,168,070 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1743,148,079 - 43,168,070 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1745,205,514 - 45,225,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01749,964,628 - 49,984,588 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01744,455,001 - 44,474,976 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01745,188,221 - 45,207,846 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1745,188,248 - 45,207,065 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01758,261,028 - 58,283,803 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41750,790,889 - 50,811,601 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11750,811,382 - 50,811,474 (+)NCBI
Celera1753,299,163 - 53,320,052 (-)NCBICelera
Cytogenetic Map17p11NCBI
ZSCAN26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,267,143 - 28,278,204 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,267,058 - 28,278,224 (+)EnsemblGRCh38hg38GRCh38
GRCh37628,234,921 - 28,245,981 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,342,872 - 28,353,960 (+)NCBINCBI36Build 36hg18NCBI36
Build 34628,342,911 - 28,353,957NCBI
Celera629,841,233 - 29,852,427 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,042,442 - 28,053,636 (+)NCBIHuRef
CHM1_1628,237,154 - 28,248,348 (+)NCBICHM1_1
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBIT2T-CHM13v2.0
Zscan26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391321,626,344 - 21,637,901 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1321,626,350 - 21,637,900 (-)EnsemblGRCm39 Ensembl
GRCm381321,442,180 - 21,453,727 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1321,442,180 - 21,453,730 (-)EnsemblGRCm38mm10GRCm38
MGSCv371321,534,044 - 21,545,596 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361321,449,702 - 21,455,407 (-)NCBIMGSCv36mm8
Celera1321,708,080 - 21,719,630 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map137.8NCBI
Zscan26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546513,626,541 - 13,640,818 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546513,626,552 - 13,638,819 (+)NCBIChiLan1.0ChiLan1.0
ZSCAN26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,882,293 - 42,894,125 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,883,155 - 38,894,987 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0628,069,220 - 28,080,625 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,741,890 - 28,752,403 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,741,984 - 28,752,403 (+)Ensemblpanpan1.1panPan2
ZSCAN26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,406,872 - 25,415,377 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,398,717 - 25,415,382 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3525,264,958 - 25,274,121 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03525,704,876 - 25,714,039 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3525,697,177 - 25,713,632 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13525,369,512 - 25,380,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03525,422,733 - 25,431,898 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03526,892,180 - 26,901,539 (+)NCBIUU_Cfam_GSD_1.0
Zscan26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494628,687,869 - 28,699,952 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493677286,251 - 90,873 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493677285,439 - 97,363 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,114,868 - 22,132,502 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,114,768 - 22,135,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZSCAN26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,289,206 - 44,299,823 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604427,957,009 - 27,967,844 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zscan26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475624,622,629 - 24,633,916 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475624,623,786 - 24,633,882 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zscan26
35 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174135465160463643Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)174207316069599340Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)174207316069599340Rat

Markers in Region
D17Rat100  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21743,147,477 - 43,147,685 (+)MAPPERmRatBN7.2
Rnor_6.01745,187,633 - 45,187,840NCBIRnor6.0
Rnor_5.01758,280,257 - 58,280,464UniSTSRnor5.0
RGSC_v3.41750,790,210 - 50,790,418RGDRGSC3.4
RGSC_v3.41750,790,211 - 50,790,418UniSTSRGSC3.4
RGSC_v3.11750,793,051 - 50,793,259RGD
Celera1753,320,435 - 53,320,642UniSTS
SHRSP x BN Map1730.3699UniSTS
SHRSP x BN Map1730.3699RGD
Cytogenetic Map17q11UniSTS
RH131505  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21743,167,516 - 43,167,710 (+)MAPPERmRatBN7.2
Rnor_6.01745,206,516 - 45,206,709NCBIRnor6.0
Rnor_5.01758,261,388 - 58,261,581UniSTSRnor5.0
RGSC_v3.41750,811,048 - 50,811,241UniSTSRGSC3.4
Celera1753,300,300 - 53,300,493UniSTS
Cytogenetic Map17q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 57 41 19 41 8 9 74 35 38 11 8
Low 2 2 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001400598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U78119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000080047   ⟹   ENSRNOP00000073520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1745,199,178 - 45,204,788 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091609   ⟹   ENSRNOP00000074883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1743,148,079 - 43,168,056 (+)Ensembl
Rnor_6.0 Ensembl1745,188,248 - 45,207,065 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104033   ⟹   ENSRNOP00000089670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1743,148,081 - 43,168,070 (+)Ensembl
RefSeq Acc Id: NM_001400598   ⟹   NP_001387527
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,843,822 - 47,863,799 (+)NCBI
mRatBN7.21743,148,093 - 43,168,070 (+)NCBI
RefSeq Acc Id: NM_001400599   ⟹   NP_001387528
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,843,822 - 47,863,799 (+)NCBI
mRatBN7.21743,148,093 - 43,168,070 (+)NCBI
RefSeq Acc Id: XM_017600787   ⟹   XP_017456276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,844,269 - 47,863,799 (+)NCBI
mRatBN7.21743,148,257 - 43,168,070 (+)NCBI
Rnor_6.01745,188,305 - 45,207,846 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001387527 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387528 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456276 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB36791 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000074883.1
  ENSRNOP00000089670.1
Reference Protein Sequences
RefSeq Acc Id: XP_017456276   ⟸   XM_017600787
- Peptide Label: isoform X1
- UniProtKB: D3ZFY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073520   ⟸   ENSRNOT00000080047
RefSeq Acc Id: ENSRNOP00000074883   ⟸   ENSRNOT00000091609
RefSeq Acc Id: ENSRNOP00000089670   ⟸   ENSRNOT00000104033
RefSeq Acc Id: NP_001387527   ⟸   NM_001400598
- UniProtKB: D3ZFY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387528   ⟸   NM_001400599
- UniProtKB: D3ZFY2 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFY2-F1-model_v2 AlphaFold D3ZFY2 1-465 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700493
Promoter ID:EPDNEW_R11017
Type:initiation region
Name:Zscan26_1
Description:zinc finger and SCAN domain containing 26
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01745,188,248 - 45,188,308EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727885 AgrOrtholog
BioCyc Gene G2FUF-9217 BioCyc
Ensembl Genes ENSRNOG00000053518 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000091609.2 UniProtKB/TrEMBL
  ENSRNOT00000104033.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAN_sf UniProtKB/TrEMBL
  Tscrpt_reg_SCAN UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:266792 UniProtKB/TrEMBL
NCBI Gene 266792 ENTREZGENE
PANTHER ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING PROTEIN 30 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 684 UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zscan26 PhenoGen
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000053518 RatGTEx
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6ACE6_RAT UniProtKB/TrEMBL
  D3ZFY2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-09-18 Zscan26  zinc finger and SCAN domain containing 26  Zfp187  zinc finger protein 187  Name and Symbol changed 629549 APPROVED
2008-02-25 Zfp187  zinc finger protein 187  Znf187  zinc finger protein 187  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Znf187  zinc finger protein 187  Azf8  zinc finger protein 8  Symbol and Name updated 1299863 APPROVED