Zscan26 (zinc finger and SCAN domain containing 26) - Rat Genome Database

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Gene: Zscan26 (zinc finger and SCAN domain containing 26) Rattus norvegicus
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Symbol: Zscan26
Name: zinc finger and SCAN domain containing 26
RGD ID: 727885
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Orthologous to human ZSCAN26 (zinc finger and SCAN domain containing 26); INTERACTS WITH 17beta-estradiol; 4,4'-sulfonyldiphenol; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Azf8; Zfp187; zinc finger and SCAN domain-containing protein 26; zinc finger protein 187; zinc finger protein 8; Znf187
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,843,822 - 47,863,799 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1747,807,150 - 47,863,790 (+)EnsemblGRCr8
mRatBN7.21743,148,063 - 43,168,070 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1743,148,079 - 43,168,070 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1745,205,514 - 45,225,474 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01749,964,628 - 49,984,588 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01744,455,001 - 44,474,976 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01745,188,221 - 45,207,846 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1745,188,248 - 45,207,065 (+)Ensemblrn6Rnor6.0
Rnor_5.01758,261,028 - 58,283,803 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41750,790,889 - 50,811,601 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1753,299,163 - 53,320,052 (-)NCBICelera
RGSC_v3.11750,811,382 - 50,811,474 (+)NCBI
Cytogenetic Map17p11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Identification and characterization of zinc finger encoding genes from the tumoral exocrine pancreatic cell line AR42J. Mesa K, etal., Cancer Lett 1996 Jun 5;103(2):143-9.
4. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zscan26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,843,822 - 47,863,799 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1747,807,150 - 47,863,790 (+)EnsemblGRCr8
mRatBN7.21743,148,063 - 43,168,070 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1743,148,079 - 43,168,070 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1745,205,514 - 45,225,474 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01749,964,628 - 49,984,588 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01744,455,001 - 44,474,976 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01745,188,221 - 45,207,846 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1745,188,248 - 45,207,065 (+)Ensemblrn6Rnor6.0
Rnor_5.01758,261,028 - 58,283,803 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41750,790,889 - 50,811,601 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1753,299,163 - 53,320,052 (-)NCBICelera
RGSC_v3.11750,811,382 - 50,811,474 (+)NCBI
Cytogenetic Map17p11NCBI
ZSCAN26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,267,143 - 28,278,204 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,267,058 - 28,278,224 (+)Ensemblhg38GRCh38
GRCh37628,234,921 - 28,245,981 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,342,872 - 28,353,960 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34628,342,911 - 28,353,957NCBI
Celera629,841,233 - 29,852,427 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,042,442 - 28,053,636 (+)NCBIHuRef
CHM1_1628,237,154 - 28,248,348 (+)NCBICHM1_1
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBIT2T-CHM13v2.0
Zscan26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391321,626,344 - 21,637,901 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1321,626,350 - 21,637,900 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381321,442,180 - 21,453,727 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1321,442,180 - 21,453,730 (-)Ensemblmm10GRCm38
MGSCv371321,534,044 - 21,545,596 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361321,449,702 - 21,455,407 (-)NCBIMGSCv36mm8
Celera1321,708,080 - 21,719,630 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map137.8NCBI
Zscan26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546513,626,541 - 13,640,818 (+)Ensembl
ChiLan1.0NW_00495546513,626,552 - 13,638,819 (+)NCBIChiLan1.0ChiLan1.0
ZSCAN26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,882,293 - 42,894,125 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,883,155 - 38,894,987 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0628,069,220 - 28,080,625 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,741,890 - 28,752,403 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,741,984 - 28,752,403 (+)EnsemblpanPan2panpan1.1
ZSCAN26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,406,872 - 25,415,377 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,398,717 - 25,415,382 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3525,264,958 - 25,274,121 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03525,704,876 - 25,714,039 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3525,697,177 - 25,713,632 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13525,369,512 - 25,380,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03525,422,733 - 25,431,898 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03526,892,180 - 26,901,539 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zscan26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494628,687,869 - 28,699,952 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493677286,251 - 90,873 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493677285,439 - 97,363 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,114,868 - 22,132,502 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1722,114,768 - 22,135,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZSCAN26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,289,206 - 44,299,823 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604427,957,009 - 27,967,844 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zscan26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475624,622,629 - 24,633,916 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475624,623,786 - 24,633,882 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Zscan26
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11440,997,799 - 41,019,539 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zscan26
110 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)173803135483031354Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172266079955604694Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172149899450592236Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)173803135483031354Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)173544694975762341Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)173803135483031354Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173803135483031354Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)174605012691050126Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)174265489587654895Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173604553781045537Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174238816487388164Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)173310464578104645Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173219953449497050Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173219953455604694Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)173310464578104645Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)174238816487388164Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)173768787782687877Rat

Markers in Region
D17Rat100  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81747,843,206 - 47,843,414 (+)Marker Load Pipeline
mRatBN7.21743,147,477 - 43,147,685 (+)MAPPERmRatBN7.2
Rnor_6.01745,187,633 - 45,187,840NCBIRnor6.0
Rnor_5.01758,280,257 - 58,280,464UniSTSRnor5.0
RGSC_v3.41750,790,211 - 50,790,418UniSTSRGSC3.4
RGSC_v3.41750,790,210 - 50,790,418RGDRGSC3.4
Celera1753,320,435 - 53,320,642UniSTS
RGSC_v3.11750,793,051 - 50,793,259RGD
SHRSP x BN Map1730.3699UniSTS
SHRSP x BN Map1730.3699RGD
Cytogenetic Map17q11UniSTS
RH131505  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81747,863,246 - 47,863,439 (+)Marker Load Pipeline
mRatBN7.21743,167,516 - 43,167,710 (+)MAPPERmRatBN7.2
Rnor_6.01745,206,516 - 45,206,709NCBIRnor6.0
Rnor_5.01758,261,388 - 58,261,581UniSTSRnor5.0
RGSC_v3.41750,811,048 - 50,811,241UniSTSRGSC3.4
Celera1753,300,300 - 53,300,493UniSTS
Cytogenetic Map17q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001400598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001400599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U78119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000080047   ⟹   ENSRNOP00000073520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1745,199,178 - 45,204,788 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091609   ⟹   ENSRNOP00000074883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1747,843,854 - 47,863,790 (+)Ensembl
mRatBN7.2 Ensembl1743,148,079 - 43,168,056 (+)Ensembl
Rnor_6.0 Ensembl1745,188,248 - 45,207,065 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104033   ⟹   ENSRNOP00000089670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1747,807,150 - 47,863,790 (+)Ensembl
mRatBN7.2 Ensembl1743,148,081 - 43,168,070 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000123461   ⟹   ENSRNOP00000101292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1747,835,139 - 47,863,790 (+)Ensembl
RefSeq Acc Id: NM_001400598   ⟹   NP_001387527
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,843,822 - 47,863,799 (+)NCBI
mRatBN7.21743,148,093 - 43,168,070 (+)NCBI
RefSeq Acc Id: NM_001400599   ⟹   NP_001387528
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,843,822 - 47,863,799 (+)NCBI
mRatBN7.21743,148,093 - 43,168,070 (+)NCBI
RefSeq Acc Id: XM_017600787   ⟹   XP_017456276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81747,844,269 - 47,863,799 (+)NCBI
mRatBN7.21743,148,257 - 43,168,070 (+)NCBI
Rnor_6.01745,188,305 - 45,207,846 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001387527 (Get FASTA)   NCBI Sequence Viewer  
  NP_001387528 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456276 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB36791 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000074883
  ENSRNOP00000074883.1
  ENSRNOP00000089670.2
  ENSRNOP00000101292.1
RefSeq Acc Id: XP_017456276   ⟸   XM_017600787
- Peptide Label: isoform X1
- UniProtKB: D3ZFY2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073520   ⟸   ENSRNOT00000080047
Ensembl Acc Id: ENSRNOP00000074883   ⟸   ENSRNOT00000091609
Ensembl Acc Id: ENSRNOP00000089670   ⟸   ENSRNOT00000104033
RefSeq Acc Id: NP_001387527   ⟸   NM_001400598
- UniProtKB: D3ZFY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387528   ⟸   NM_001400599
- UniProtKB: D3ZFY2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101292   ⟸   ENSRNOT00000123461

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZFY2-F1-model_v2 AlphaFold D3ZFY2 1-465 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700493
Promoter ID:EPDNEW_R11017
Type:initiation region
Name:Zscan26_1
Description:zinc finger and SCAN domain containing 26
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01745,188,248 - 45,188,308EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727885 AgrOrtholog
BioCyc Gene G2FUF-9217 BioCyc
Ensembl Genes ENSRNOG00000053518 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000091609 ENTREZGENE
  ENSRNOT00000091609.3 UniProtKB/TrEMBL
  ENSRNOT00000104033.2 UniProtKB/TrEMBL
  ENSRNOT00000123461.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAN_sf UniProtKB/TrEMBL
  Tscrpt_reg_SCAN UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
NCBI Gene 266792 ENTREZGENE
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN-RELATED UniProtKB/TrEMBL
  KRUEPPEL-LIKE TRANSCRIPTION FACTOR UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN ZFP2 UniProtKB/TrEMBL
Pfam SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zscan26 PhenoGen
PROSITE SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000053518 RatGTEx
SMART SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6ACE6_RAT UniProtKB/TrEMBL
  A0ABK0L057_RAT UniProtKB/TrEMBL
  D3ZFY2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-09-18 Zscan26  zinc finger and SCAN domain containing 26  Zfp187  zinc finger protein 187  Name and Symbol changed 629549 APPROVED
2008-02-25 Zfp187  zinc finger protein 187  Znf187  zinc finger protein 187  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Znf187  zinc finger protein 187  Azf8  zinc finger protein 8  Symbol and Name updated 1299863 APPROVED