Bag6 (BAG cochaperone 6) - Rat Genome Database

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Gene: Bag6 (BAG cochaperone 6) Rattus norvegicus
Analyze
Symbol: Bag6
Name: BAG cochaperone 6
RGD ID: 71064
Description: Predicted to enable several functions, including Hsp70 protein binding activity; enzyme binding activity; and misfolded protein binding activity. Involved in regulation of cell population proliferation. Predicted to be located in several cellular components, including cytosol; extracellular exosome; and nucleoplasm. Predicted to be part of BAT3 complex. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma and osteoarthritis. Orthologous to human BAG6 (BAG cochaperone 6); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Bat3; BCL2-associated athanogene 6; HLA-B associated transcript 3; HLA-B-associated transcript 3; large proline-rich protein BAG6; large proline-rich protein BAT3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,680,607 - 3,693,329 (-)NCBIGRCr8
mRatBN7.2203,675,938 - 3,690,414 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,675,938 - 3,688,657 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,375,276 - 4,387,974 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,737,333 - 3,750,032 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,275,094 - 4,287,807 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,124,512 - 5,138,084 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,125,349 - 5,138,084 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,198,613 - 7,211,343 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,739,593 - 3,752,311 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,739,819 - 3,752,493 (-)NCBI
Celera204,336,986 - 4,349,704 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bag6Ratgastrointestinal stromal tumor disease_progressionISOBAG6 (Homo sapiens)14390153 RGD 
Bag6Ratlung non-small cell carcinoma susceptibilityISOBAG6 (Homo sapiens)14390136DNA:SNP: :rs3117582(human)RGD 
Bag6Ratosteoarthritis susceptibilityISOBAG6 (Homo sapiens)14390133DNA:SNP: :rs3117582(human)RGD 
Bag6RatTransplant Rejection susceptibilityISOBAG6 (Homo sapiens)14390152DNA:haplotype: :rs10484558(human)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
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Source
Original Reference(s)
Bag6Ratmegacolon  ISOBAG6 (Homo sapiens)8554872ClinVar Annotator: match by term: MegacolonClinVarPMID:21681106
Bag6Ratperiventricular nodular heterotopia  ISOBAG6 (Homo sapiens)8554872ClinVar Annotator: match by term: Periventricular nodular heterotopiaClinVarPMID:31474318
Bag6Ratproteasome-associated autoinflammatory syndrome 1  ISOBAG6 (Homo sapiens)8554872ClinVar Annotator: match by term: Proteasome-associated autoinflammatory syndrome 1ClinVarPMID:28492532

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Original Reference(s)
Bag6Rat(-)-epigallocatechin 3-gallate multiple interactionsISOBAG6 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in increased expression of BAG6 mRNACTDPMID:22079256
Bag6Rat1,2-dimethylhydrazine affects expressionISOBag6 (Mus musculus)64804641 and 2-Dimethylhydrazine affects the expression of BAG6 mRNACTDPMID:22206623
Bag6Rat17beta-estradiol increases expressionISOBag6 (Mus musculus)6480464Estradiol results in increased expression of BAG6 mRNACTDPMID:39298647
Bag6Rat2,2',4,4'-Tetrabromodiphenyl ether increases expressionEXP 64804642 more ...CTDPMID:27291303
Bag6Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOBAG6 (Homo sapiens)64804642 more ...CTDPMID:31675489
Bag6Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOBag6 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of BAG6 mRNACTDPMID:21570461 and PMID:24680724
Bag6Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of BAG6 mRNACTDPMID:21346803
Bag6Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of BAG6 mRNACTDPMID:21346803
Bag6Rat2-ethoxyethanol increases expressionEXP 64804642-ethoxyethanol results in increased expression of BAG6 mRNACTDPMID:19643169
Bag6Rat2-methoxyethanol increases expressionEXP 6480464methyl cellosolve results in increased expression of BAG6 mRNACTDPMID:19643169
Bag6Rat2-methylcholine affects expressionISOBAG6 (Homo sapiens)6480464beta-methylcholine affects the expression of BAG6 mRNACTDPMID:21179406
Bag6Rat3,4-methylenedioxymethamphetamine increases methylationISOBag6 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased methylation of BAG6 promoterCTDPMID:26251327
Bag6Rat3,4-methylenedioxymethamphetamine decreases expressionISOBag6 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of BAG6 mRNACTDPMID:26251327
Bag6Rat4,4'-sulfonyldiphenol increases expressionISOBAG6 (Homo sapiens)6480464bisphenol S results in increased expression of BAG6 proteinCTDPMID:34186270
Bag6Rat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of BAG6 mRNACTDPMID:36041667
Bag6Ratammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of BAG6 mRNACTDPMID:16483693
Bag6Ratatrazine increases expressionISOBAG6 (Homo sapiens)6480464Atrazine results in increased expression of BAG6 mRNACTDPMID:22378314
Bag6Ratbenzo[a]pyrene increases expressionISOBag6 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of BAG6 mRNACTDPMID:22228805
Bag6Ratbenzo[a]pyrene decreases methylationISOBAG6 (Homo sapiens)6480464Benzo(a)pyrene results in decreased methylation of BAG6 5' UTR and Benzo(a)pyrene results in decreased methylation of BAG6 promoterCTDPMID:27901495
Bag6Ratbenzo[e]pyrene increases methylationISOBAG6 (Homo sapiens)6480464benzo(e)pyrene results in increased methylation of BAG6 exonCTDPMID:30157460

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Biological Process
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Original Reference(s)
Bag6Ratapoptotic process involved_inISOBAG6 (Homo sapiens)1624291 PMID:14960581RGDPMID:14960581
Bag6Ratapoptotic process involved_inIEAUniProtKB:P46379 and ensembl:ENSP000005029411600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6Ratapoptotic process involved_inISSUniProtKB:P463791600115GO_REF:0000024UniProtGO_REF:0000024
Bag6Ratapoptotic process involved_inIEAUniProtKB-KW:KW-00531600115GO_REF:0000043UniProtGO_REF:0000043
Bag6Ratbrain development involved_inISSUniProtKB:Q9Z1R21600115GO_REF:0000024UniProtGO_REF:0000024
Bag6Ratbrain development involved_inISOBag6 (Mus musculus)1624291 PMID:16287848RGDPMID:16287848
Bag6Ratbrain development involved_inIEAUniProtKB:Q9Z1R2 and ensembl:ENSMUSP000000252501600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6Ratcell differentiation involved_inIEAUniProtKB-KW:KW-02211600115GO_REF:0000043UniProtGO_REF:0000043
Bag6Ratchromatin organization involved_inIEAUniProtKB-KW:KW-01561600115GO_REF:0000043UniProtGO_REF:0000043
Bag6Ratendoplasmic reticulum stress-induced pre-emptive quality control involved_inISSUniProtKB:P463791600115GO_REF:0000024UniProtGO_REF:0000024
Bag6Ratendoplasmic reticulum stress-induced pre-emptive quality control involved_inIEAUniProtKB:P46379 and ensembl:ENSP000005029411600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6Ratendoplasmic reticulum stress-induced pre-emptive quality control involved_inISOBAG6 (Homo sapiens)1624291 PMID:26565908RGDPMID:26565908
Bag6RatERAD pathway involved_inIEAUniProtKB:P46379 and ensembl:ENSP000005029411600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6RatERAD pathway involved_inISOBAG6 (Homo sapiens)1624291 PMID:23129660 more ...RGDPMID:23129660 more ...
Bag6RatERAD pathway involved_inISSUniProtKB:P463791600115GO_REF:0000024UniProtGO_REF:0000024
Bag6RatERAD pathway involved_inIBAPANTHER:PTN000390583 and UniProtKB:P463791600115GO_REF:0000033GO_CentralGO_REF:0000033
Bag6Ratimmune response-activating cell surface receptor signaling pathway involved_inIEAUniProtKB:P46379 and ensembl:ENSP000005029411600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6Ratimmune response-activating cell surface receptor signaling pathway involved_inISOBAG6 (Homo sapiens)1624291 PMID:18852879RGDPMID:18852879
Bag6Ratimmune system process involved_inIEAUniProtKB-KW:KW-03911600115GO_REF:0000043UniProtGO_REF:0000043
Bag6Ratinternal peptidyl-lysine acetylation involved_inISSUniProtKB:P463791600115GO_REF:0000024UniProtGO_REF:0000024
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Cellular Component
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Original Reference(s)
Bag6RatBAT3 complex part_ofISSUniProtKB:P463791600115GO_REF:0000024UniProtGO_REF:0000024
Bag6RatBAT3 complex part_ofIBAPANTHER:PTN000390583 and UniProtKB:P463791600115GO_REF:0000033GO_CentralGO_REF:0000033
Bag6RatBAT3 complex part_ofIEAUniProtKB:P46379 and ensembl:ENSP000005029411600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6RatBAT3 complex part_ofISOBAG6 (Homo sapiens)1624291 PMID:20676083 more ...RGDPMID:20676083 more ...
Bag6Ratcytoplasm located_inISOBAG6 (Homo sapiens)1624291 PMID:21636303RGDPMID:21636303
Bag6Ratcytoplasm located_inIEAUniProtKB:P46379 and ensembl:ENSP000005029411600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Bag6Ratcytosol located_inISOBAG6 (Homo sapiens)1624291 PMID:17403783 more ...RGDPMID:17403783 more ...
Bag6Ratcytosol located_inIEAUniProtKB:P46379 and ensembl:ENSP000005029411600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6Ratcytosol located_inISOBag6 (Mus musculus)1624291 PMID:18056262RGDPMID:18056262
Bag6Ratcytosol located_inIEAUniProtKB:Q9Z1R2 and ensembl:ENSMUSP000000252501600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6Ratcytosol located_inISSUniProtKB:P463791600115GO_REF:0000024UniProtGO_REF:0000024
Bag6Ratcytosol located_inISOBAG6 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Bag6Ratcytosol located_inIEAUniProtKB-SubCell:SL-00911600115GO_REF:0000044UniProtGO_REF:0000044
Bag6Ratextracellular exosome located_inISOBAG6 (Homo sapiens)1624291 PMID:18852879RGDPMID:18852879
Bag6Ratextracellular exosome located_inIEAUniProtKB:P46379 and ensembl:ENSP000005029411600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6Ratextracellular region located_inIEAUniProtKB-SubCell:SL-02431600115GO_REF:0000044UniProtGO_REF:0000044
Bag6Ratextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
Bag6Ratintracellular membrane-bounded organelle located_inISOBAG6 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Bag6Ratintracellular membrane-bounded organelle located_inIEAUniProtKB:P46379 and ensembl:ENSP000005029411600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function
1 to 20 of 36 rows

  
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Original Reference(s)
Bag6RatHsp70 protein binding enablesIEAUniProtKB:Q9Z1R2 and ensembl:ENSMUSP000000252501600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6RatHsp70 protein binding enablesISOBag6 (Mus musculus)1624291UniProtKB:P17156 and PMID:18678708RGDPMID:18678708
Bag6Ratidentical protein binding enablesISOBAG6 (Homo sapiens) and UniProtKB:P46379-21624291UniProtKB:P46379-2 and PMID:24133212RGDPMID:24133212
Bag6Ratmisfolded protein binding enablesISOBAG6 (Homo sapiens)1624291 PMID:21636303RGDPMID:21636303
Bag6Ratmisfolded protein binding enablesIBAPANTHER:PTN000390583 and UniProtKB:P463791600115GO_REF:0000033GO_CentralGO_REF:0000033
Bag6Ratmisfolded protein binding enablesIEAUniProtKB:P46379 and ensembl:ENSP000005029411600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6Ratmolecular adaptor activity enablesISOBAG6 (Homo sapiens)1624291 PMID:25713138RGDPMID:25713138
Bag6Ratmolecular function activator activity enablesIEAUniProtKB:P46379 and ensembl:ENSP000005029411600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6Ratmolecular function activator activity enablesISOBAG6 (Homo sapiens)1624291 PMID:25713138RGDPMID:25713138
Bag6Ratpolyubiquitin modification-dependent protein binding enablesISSUniProtKB:Q9Z1R21600115GO_REF:0000024UniProtGO_REF:0000024
Bag6Ratpolyubiquitin modification-dependent protein binding enablesISOBag6 (Mus musculus)1624291 PMID:20713601RGDPMID:20713601
Bag6Ratpolyubiquitin modification-dependent protein binding enablesIBAMGI:1919439 and PANTHER:PTN0003905831600115GO_REF:0000033GO_CentralGO_REF:0000033
Bag6Ratpolyubiquitin modification-dependent protein binding enablesIEAUniProtKB:Q9Z1R2 and ensembl:ENSMUSP000000252501600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6Ratproteasome binding enablesISOBag6 (Mus musculus)1624291 PMID:20713601RGDPMID:20713601
Bag6Ratproteasome binding enablesIEAUniProtKB:Q9Z1R2 and ensembl:ENSMUSP000000252501600115GO_REF:0000107EnsemblGO_REF:0000107
Bag6Ratproteasome binding enablesISSUniProtKB:Q9Z1R21600115GO_REF:0000024UniProtGO_REF:0000024
Bag6Ratprotein binding enablesISOBAG6 (Homo sapiens)1624291UniProtKB:O14931 more ...RGDPMID:14667819 more ...
Bag6Ratprotein binding enablesISOBag6 (Mus musculus)1624291PR:Q8K459 more ...RGDPMID:15102471 more ...
Bag6Ratprotein binding enablesISOBAG6 (Homo sapiens) more ...1624291UniProtKB:O14931-1 and PMID:24133212RGDPMID:24133212
Bag6Ratprotein binding enablesISOBAG6 (Homo sapiens) and UniProtKB:P46379-21624291UniProtKB:A0A0S2Z5Q7 more ...RGDPMID:28514442 more ...
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Reference Title
Reference Citation
1. Susceptibility to large-joint osteoarthritis (hip and knee) is associated with BAG6 rs3117582 SNP and the VNTR polymorphism in the second exon of the FAM46A gene on chromosome 6. Etokebe GE, etal., J Orthop Res. 2015 Jan;33(1):56-62. doi: 10.1002/jor.22738. Epub 2014 Sep 18.
2. Association of the FAM46A gene VNTRs and BAG6 rs3117582 SNP with non small cell lung cancer (NSCLC) in Croatian and Norwegian populations. Etokebe GE, etal., PLoS One. 2015 Apr 17;10(4):e0122651. doi: 10.1371/journal.pone.0122651. eCollection 2015.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Gene Data Set MGD Curation, June 12, 2002
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Cloning and characterization of rat BAT3 cDNA. Ozaki T, etal., DNA Cell Biol 1999 Jun;18(6):503-12.
9. BAT2 and BAT3 polymorphisms as novel genetic risk factors for rejection after HLA-related SCT. Piras IS, etal., Bone Marrow Transplant. 2014 Nov;49(11):1400-1404. doi: 10.1038/bmt.2014.177. Epub 2014 Aug 11.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. NKp30 isoforms and NKp30 ligands are predictive biomarkers of response to imatinib mesylate in metastatic GIST patients. Rusakiewicz S, etal., Oncoimmunology. 2016 Apr 25;6(1):e1137418. doi: 10.1080/2162402X.2015.1137418. eCollection 2017.
14. The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles. Topalidou I, etal., PLoS Genet. 2016 May 18;12(5):e1006074. doi: 10.1371/journal.pgen.1006074. eCollection 2016 May.
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PMID:10777571   PMID:12477932   PMID:14960581   PMID:15060004   PMID:16287848   PMID:17403783   PMID:18056262   PMID:18487607   PMID:18678708   PMID:18852879   PMID:19946888   PMID:20676083  
PMID:20713601   PMID:21460186   PMID:21636303   PMID:22871113   PMID:23129660   PMID:23246001   PMID:24133212   PMID:24424410   PMID:24981174   PMID:25535373   PMID:26565908   PMID:26692333  
PMID:27501752   PMID:29042515   PMID:30053369  



Bag6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,680,607 - 3,693,329 (-)NCBIGRCr8
mRatBN7.2203,675,938 - 3,690,414 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,675,938 - 3,688,657 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,375,276 - 4,387,974 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,737,333 - 3,750,032 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,275,094 - 4,287,807 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,124,512 - 5,138,084 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,125,349 - 5,138,084 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,198,613 - 7,211,343 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,739,593 - 3,752,311 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,739,819 - 3,752,493 (-)NCBI
Celera204,336,986 - 4,349,704 (+)NCBICelera
Cytogenetic Map20p12NCBI
BAG6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,639,028 - 31,652,661 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,639,028 - 31,652,705 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,606,805 - 31,620,438 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,714,784 - 31,728,456 (-)NCBINCBI36Build 36hg18NCBI36
Build 34631,714,796 - 31,728,426NCBI
Celera633,205,026 - 33,218,698 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,392,973 - 31,406,702 (-)NCBIHuRef
CHM1_1631,608,941 - 31,622,613 (-)NCBICHM1_1
T2T-CHM13v2.0631,492,070 - 31,505,694 (-)NCBIT2T-CHM13v2.0
Bag6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,354,132 - 35,366,297 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,354,154 - 35,366,298 (+)EnsemblGRCm39 Ensembl
GRCm381735,135,156 - 35,147,321 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,135,178 - 35,147,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,272,187 - 35,284,181 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,743,298 - 34,755,292 (+)NCBIMGSCv36mm8
Celera1738,232,179 - 38,244,173 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
Bag6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437176,797 - 188,003 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955437176,848 - 188,243 (-)NCBIChiLan1.0ChiLan1.0
BAG6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,115,976 - 46,131,286 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,077,504 - 42,091,719 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,300,126 - 31,313,829 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,190,037 - 32,204,321 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,190,037 - 32,204,321 (-)Ensemblpanpan1.1panPan2
BAG6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,126,730 - 1,141,978 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,126,732 - 1,137,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,263,174 - 1,278,145 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,271,966 - 1,286,938 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,271,955 - 1,283,082 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,131,332 - 1,146,287 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,198,583 - 1,213,550 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,265,643 - 1,280,617 (-)NCBIUU_Cfam_GSD_1.0
Bag6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,676,078 - 35,695,078 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,873,413 - 1,885,366 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,866,235 - 1,885,266 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BAG6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,756,897 - 23,768,666 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,756,897 - 23,768,659 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,483,304 - 27,495,077 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BAG6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604431,548,910 - 31,563,916 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bag6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,559,801 - 24,571,073 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,559,483 - 24,571,073 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Bag6
165 total Variants

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:32
Interacting mature miRNAs:34
Transcripts:ENSRNOT00000001129, ENSRNOT00000060832
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 24 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61472Aia1Adjuvant induced arthritis QTL 1180.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2026463954597031Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015279595304575Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
61448Ciaa1CIA Autoantibody QTL 1300.001blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)2026463954597031Rat

1 to 10 of 24 rows
AA900379  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8203,681,055 - 3,681,646 (+)Marker Load Pipeline
mRatBN7.2203,676,386 - 3,676,977 (-)MAPPERmRatBN7.2
Rnor_6.0205,137,045 - 5,137,635NCBIRnor6.0
Rnor_5.0207,210,304 - 7,210,894UniSTSRnor5.0
RGSC_v3.4203,740,042 - 3,740,632UniSTSRGSC3.4
Celera204,348,665 - 4,349,255UniSTS
RH 3.4 Map2053.1UniSTS
Cytogenetic Map20p12UniSTS
BE098892  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8203,693,598 - 3,693,771 (+)Marker Load Pipeline
mRatBN7.2203,688,930 - 3,689,103 (-)MAPPERmRatBN7.2
Rnor_6.0205,124,920 - 5,125,092NCBIRnor6.0
Rnor_5.0207,198,179 - 7,198,351UniSTSRnor5.0
RGSC_v3.4203,752,585 - 3,752,757UniSTSRGSC3.4
Celera204,336,540 - 4,336,712UniSTS
RH 3.4 Map2051.6UniSTS
Cytogenetic Map20p12UniSTS
RH126866  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8203,684,485 - 3,685,022 (+)Marker Load Pipeline
mRatBN7.2203,679,816 - 3,680,353 (-)MAPPERmRatBN7.2
Rnor_6.0205,133,669 - 5,134,205NCBIRnor6.0
Rnor_5.0207,206,928 - 7,207,464UniSTSRnor5.0
RGSC_v3.4203,743,472 - 3,744,008UniSTSRGSC3.4
Celera204,345,289 - 4,345,825UniSTS
Cytogenetic Map20p12UniSTS
RH35871  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8203,682,504 - 3,682,957 (+)Marker Load Pipeline
mRatBN7.2203,677,835 - 3,678,288 (-)MAPPERmRatBN7.2
Rnor_6.0205,135,734 - 5,136,186NCBIRnor6.0
Rnor_5.0207,208,993 - 7,209,445UniSTSRnor5.0
RGSC_v3.4203,741,491 - 3,741,943UniSTSRGSC3.4
Celera204,347,354 - 4,347,806UniSTS
Cytogenetic Map20p12UniSTS
MARC_5411-5412:996690356:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8203,681,050 - 3,681,629 (+)Marker Load Pipeline
mRatBN7.2203,676,381 - 3,676,960 (-)MAPPERmRatBN7.2
Rnor_6.0205,137,062 - 5,137,640NCBIRnor6.0
Rnor_5.0207,210,321 - 7,210,899UniSTSRnor5.0
RGSC_v3.4203,740,037 - 3,740,615UniSTSRGSC3.4
Celera204,348,682 - 4,349,260UniSTS
Cytogenetic Map20p12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 30 of 48 rows
RefSeq Transcripts NM_001033968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001414741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 48 rows

Ensembl Acc Id: ENSRNOT00000001129   ⟹   ENSRNOP00000001129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,675,938 - 3,688,657 (-)Ensembl
Rnor_6.0 Ensembl205,125,411 - 5,138,084 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000060832   ⟹   ENSRNOP00000057557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,675,938 - 3,688,362 (-)Ensembl
Rnor_6.0 Ensembl205,125,679 - 5,138,084 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085598   ⟹   ENSRNOP00000074143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,675,938 - 3,688,362 (-)Ensembl
Rnor_6.0 Ensembl205,125,349 - 5,138,084 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097591   ⟹   ENSRNOP00000090281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,675,939 - 3,688,143 (-)Ensembl
RefSeq Acc Id: NM_001033968   ⟹   NP_001029140
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,025 (-)NCBI
mRatBN7.2203,675,938 - 3,688,357 (-)NCBI
Rnor_6.0205,125,679 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
RGSC_v3.4203,739,593 - 3,752,311 (-)RGD
Celera204,337,299 - 4,349,704 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001414741   ⟹   NP_001401670
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,329 (-)NCBI
mRatBN7.2203,675,938 - 3,688,661 (-)NCBI
RefSeq Acc Id: NM_053609   ⟹   NP_446061
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,329 (-)NCBI
mRatBN7.2203,675,938 - 3,688,661 (-)NCBI
Rnor_6.0205,125,366 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
RGSC_v3.4203,739,593 - 3,752,311 (-)RGD
Celera204,336,986 - 4,349,704 (+)RGD
Sequence:
RefSeq Acc Id: XM_006256082   ⟹   XP_006256144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,060 (-)NCBI
mRatBN7.2203,675,938 - 3,688,406 (-)NCBI
Rnor_6.0205,125,617 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256083   ⟹   XP_006256145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,074 (-)NCBI
mRatBN7.2203,675,938 - 3,688,406 (-)NCBI
Rnor_6.0205,125,617 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256084   ⟹   XP_006256146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,074 (-)NCBI
mRatBN7.2203,675,938 - 3,688,406 (-)NCBI
Rnor_6.0205,125,617 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256087   ⟹   XP_006256149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,692,835 (-)NCBI
mRatBN7.2203,675,938 - 3,688,169 (-)NCBI
Rnor_6.0205,125,788 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256088   ⟹   XP_006256150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,074 (-)NCBI
mRatBN7.2203,675,938 - 3,688,406 (-)NCBI
Rnor_6.0205,125,617 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256089   ⟹   XP_006256151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,060 (-)NCBI
mRatBN7.2203,675,938 - 3,688,406 (-)NCBI
Rnor_6.0205,125,617 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256090   ⟹   XP_006256152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,074 (-)NCBI
mRatBN7.2203,675,938 - 3,688,406 (-)NCBI
Rnor_6.0205,125,617 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256091   ⟹   XP_006256153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,074 (-)NCBI
mRatBN7.2203,676,009 - 3,688,406 (-)NCBI
Rnor_6.0205,125,617 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256092   ⟹   XP_006256154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,074 (-)NCBI
mRatBN7.2203,675,945 - 3,688,406 (-)NCBI
Rnor_6.0205,125,617 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256093   ⟹   XP_006256155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
mRatBN7.2203,675,939 - 3,688,674 (-)NCBI
Rnor_6.0205,125,349 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006256094   ⟹   XP_006256156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,060 (-)NCBI
mRatBN7.2203,676,009 - 3,688,406 (-)NCBI
Rnor_6.0205,125,617 - 5,138,084 (+)NCBI
Rnor_5.0207,198,613 - 7,211,343 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039099133   ⟹   XP_038955061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,237 (-)NCBI
mRatBN7.2203,675,938 - 3,690,414 (-)NCBI
RefSeq Acc Id: XM_039099135   ⟹   XP_038955063
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,074 (-)NCBI
mRatBN7.2203,676,009 - 3,688,406 (-)NCBI
RefSeq Acc Id: XM_039099136   ⟹   XP_038955064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
mRatBN7.2203,675,938 - 3,688,661 (-)NCBI
RefSeq Acc Id: XM_039099137   ⟹   XP_038955065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,074 (-)NCBI
mRatBN7.2203,675,938 - 3,688,406 (-)NCBI
RefSeq Acc Id: XM_039099138   ⟹   XP_038955066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,074 (-)NCBI
mRatBN7.2203,676,009 - 3,688,406 (-)NCBI
RefSeq Acc Id: XM_039099139   ⟹   XP_038955067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,074 (-)NCBI
mRatBN7.2203,676,009 - 3,688,406 (-)NCBI
RefSeq Acc Id: XM_039099140   ⟹   XP_038955068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,074 (-)NCBI
mRatBN7.2203,676,009 - 3,688,406 (-)NCBI
RefSeq Acc Id: XM_063279582   ⟹   XP_063135652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,074 (-)NCBI
RefSeq Acc Id: XM_063279583   ⟹   XP_063135653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
RefSeq Acc Id: XM_063279584   ⟹   XP_063135654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
RefSeq Acc Id: XM_063279585   ⟹   XP_063135655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
RefSeq Acc Id: XM_063279586   ⟹   XP_063135656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,692,833 (-)NCBI
RefSeq Acc Id: XM_063279587   ⟹   XP_063135657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,237 (-)NCBI
RefSeq Acc Id: XM_063279588   ⟹   XP_063135658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
RefSeq Acc Id: XM_063279589   ⟹   XP_063135659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,692,834 (-)NCBI
RefSeq Acc Id: XM_063279590   ⟹   XP_063135660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,237 (-)NCBI
RefSeq Acc Id: XM_063279591   ⟹   XP_063135661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
RefSeq Acc Id: XM_063279592   ⟹   XP_063135662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,237 (-)NCBI
RefSeq Acc Id: XM_063279593   ⟹   XP_063135663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
RefSeq Acc Id: XM_063279594   ⟹   XP_063135664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
RefSeq Acc Id: XM_063279595   ⟹   XP_063135665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
RefSeq Acc Id: XM_063279596   ⟹   XP_063135666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
RefSeq Acc Id: XM_063279598   ⟹   XP_063135668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
RefSeq Acc Id: XM_063279599   ⟹   XP_063135669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,692,837 (-)NCBI
RefSeq Acc Id: XM_063279600   ⟹   XP_063135670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,680,607 - 3,693,221 (-)NCBI
1 to 30 of 49 rows
Protein RefSeqs NP_001029140 (Get FASTA)   NCBI Sequence Viewer  
  NP_001401670 (Get FASTA)   NCBI Sequence Viewer  
  NP_446061 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256144 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256145 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256146 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256149 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256150 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256151 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256152 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256153 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256154 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256155 (Get FASTA)   NCBI Sequence Viewer  
  XP_006256156 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955061 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955063 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955064 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955065 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955066 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955067 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955068 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135652 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135653 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135654 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135655 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135656 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135657 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135658 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135659 (Get FASTA)   NCBI Sequence Viewer  
  XP_063135660 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 49 rows
1 to 5 of 43 rows
1 to 5 of 43 rows
RefSeq Acc Id: NP_446061   ⟸   NM_053609
- Peptide Label: isoform 2
- UniProtKB: A6KTV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029140   ⟸   NM_001033968
- Peptide Label: isoform 1
- UniProtKB: Q498N5 (UniProtKB/Swiss-Prot),   Q9WTN8 (UniProtKB/Swiss-Prot),   Q6MG49 (UniProtKB/Swiss-Prot),   A6KTV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256155   ⟸   XM_006256093
- Peptide Label: isoform X29
- UniProtKB: A6KTV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256144   ⟸   XM_006256082
- Peptide Label: isoform X25
- UniProtKB: A0A0G2K7C1 (UniProtKB/TrEMBL),   A0A8L2QS48 (UniProtKB/TrEMBL),   A6KTV0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006256151   ⟸   XM_006256089
- Peptide Label: isoform X18
- UniProtKB: A0A8L2QS48 (UniProtKB/TrEMBL),   A6KTV0 (UniProtKB/TrEMBL)
- Sequence:
Ubiquitin-like

Name Modeler Protein Id AA Range Protein Structure
AF-Q6MG49-F1-model_v2 AlphaFold Q6MG49 1-1146 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701402
Promoter ID:EPDNEW_R11920
Type:multiple initiation site
Name:Bag6_1
Description:BCL2-associated athanogene 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11921  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,125,362 - 5,125,422EPDNEW
RGD ID:13701398
Promoter ID:EPDNEW_R11921
Type:initiation region
Name:Bag6_2
Description:BCL2-associated athanogene 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11920  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,125,666 - 5,125,726EPDNEW


1 to 40 of 42 rows
Database
Acc Id
Source(s)
BIND 130895
BioCyc Gene G2FUF-4650 BioCyc
Ensembl Genes ENSRNOG00000000851 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000001129 ENTREZGENE
  ENSRNOT00000060832 ENTREZGENE
  ENSRNOT00000085598 ENTREZGENE
  ENSRNOT00000097591 ENTREZGENE
Gene3D-CATH Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7315623 IMAGE-MGC_LOAD
InterPro BAG6 UniProtKB/Swiss-Prot
  Bag6_BAGS UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  Ubiquitin_CS UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/Swiss-Prot
KEGG Report rno:94342 UniProtKB/Swiss-Prot
MGC_CLONE MGC:114288 IMAGE-MGC_LOAD
NCBI Gene 94342 ENTREZGENE
PANTHER LARGE PROLINE-RICH PROTEIN BAG6 UniProtKB/Swiss-Prot
  LARGE PROLINE-RICH PROTEIN BAG6 UniProtKB/Swiss-Prot
Pfam BAG6 UniProtKB/Swiss-Prot
  Bag6_BAGS UniProtKB/Swiss-Prot
  ubiquitin UniProtKB/Swiss-Prot
PhenoGen Bag6 PhenoGen
PROSITE UBIQUITIN_1 UniProtKB/Swiss-Prot
  UBIQUITIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000851 RatGTEx
SMART UBQ UniProtKB/Swiss-Prot
Superfamily-SCOP Formin homology 2 domain (FH2 domain) UniProtKB/Swiss-Prot
  SSF54236 UniProtKB/Swiss-Prot
UniProt A0A0G2K7C1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ADC3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2PYQ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QS48 ENTREZGENE, UniProtKB/TrEMBL
  A6KTV0 ENTREZGENE, UniProtKB/TrEMBL
  A6KTV2 ENTREZGENE, UniProtKB/TrEMBL
  A6KTV3 ENTREZGENE, UniProtKB/TrEMBL
  BAG6_RAT UniProtKB/Swiss-Prot
  Q498N5 ENTREZGENE
  Q6MG49 ENTREZGENE
  Q9WTN8 ENTREZGENE
1 to 40 of 42 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-11 Bag6  BAG cochaperone 6  Bag6  BCL2-associated athanogene 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-28 Bag6  BCL2-associated athanogene 6  Bat3  HLA-B-associated transcript 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-07-09 Bat3  HLA-B-associated transcript 3      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

Note Type Note Reference
gene_expression expressed in all the adult tissues, enriched in testis 70664
gene_homology 87.4% identity with human BAT3 at the amino acid level 70664
gene_mapping found within the rat major histocompatibility RT1 complex 1300431
gene_physical_interaction interacts with with a candidate tumor suppressor, DAN 70664
gene_protein 1098 amino acids 70664