Socs2 (suppressor of cytokine signaling 2) - Rat Genome Database

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Gene: Socs2 (suppressor of cytokine signaling 2) Rattus norvegicus
Analyze
Symbol: Socs2
Name: suppressor of cytokine signaling 2
RGD ID: 69273
Description: Predicted to enable phosphorylation-dependent protein binding activity; signaling receptor binding activity; and ubiquitin-like ligase-substrate adaptor activity. Involved in response to peptide hormone. Predicted to be part of Cul5-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in endometrial cancer and ovarian carcinoma. Orthologous to human SOCS2 (suppressor of cytokine signaling 2); PARTICIPATES IN interleukin-2 signaling pathway; Jak-Stat signaling pathway; insulin signaling pathway; INTERACTS WITH 1,3-dinitrobenzene; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Cish2; cytokine inducible SH2-containing protein 2; cytokine-inducible SH2 protein 2; Socs-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8731,890,564 - 31,932,092 (-)NCBIGRCr8
mRatBN7.2730,006,360 - 30,045,161 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl730,008,578 - 30,043,548 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx732,027,095 - 32,029,699 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0734,201,426 - 34,204,033 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0733,970,650 - 33,973,258 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0736,495,496 - 36,500,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl736,495,480 - 36,499,784 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0736,558,014 - 36,560,623 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4732,605,714 - 32,608,323 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1732,625,999 - 32,628,594 (-)NCBI
Celera727,114,252 - 27,116,861 (-)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Socs2RatBreast Neoplasms disease_progressionISOSOCS2 (Homo sapiens)2298902 RGD 
Socs2Ratductal carcinoma in situ  ISOSOCS2 (Homo sapiens)2298909mRNA:increased expression:breastRGD 
Socs2Ratendometrial cancer  ISOSOCS2 (Homo sapiens)2298926DNA:hypermethylatedRGD 
Socs2Ratinvasive ductal carcinoma  ISOSOCS2 (Homo sapiens)2298909mRNA:increased expression:breastRGD 
Socs2RatLymphatic Metastasis  ISOSOCS2 (Homo sapiens)2298925associated with Prostatic NeoplasmsRGD 
Socs2Ratovarian carcinoma  ISOSOCS2 (Homo sapiens)2298907DNA:hypermethylationRGD 
Socs2RatSepsis  IEP 2298924protein:increased expression:gastrocnemiusRGD 
Socs2RatSpinal Cord Injuries  IEP 2298928 RGD 
Object Symbol
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Original Reference(s)
Socs2Ratallergic contact dermatitis  ISOSOCS2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16033404
Socs2RatExperimental Liver Cirrhosis  ISOSOCS2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Socs2Rathepatocellular carcinoma  ISOSOCS2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28284560
Socs2Ratlung non-small cell carcinoma  ISOSOCS2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:35305058
Socs2Ratnarcolepsy  ISOSOCS2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17521418

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Original Reference(s)
Socs2Rat(-)-demecolcine increases expressionISOSOCS2 (Homo sapiens)6480464Demecolcine results in increased expression of SOCS2 mRNACTDPMID:23649840
Socs2Rat(1->4)-beta-D-glucan multiple interactionsISOSocs2 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of SOCS2 mRNACTDPMID:36331819
Socs2Rat1,2-dichloroethane decreases expressionISOSocs2 (Mus musculus)6480464ethylene dichloride results in decreased expression of SOCS2 mRNACTDPMID:28960355
Socs2Rat1,2-dimethylhydrazine decreases expressionISOSocs2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of SOCS2 mRNACTDPMID:22206623
Socs2Rat1,3-dinitrobenzene decreases expressionEXP 64804643-dinitrobenzene results in decreased expression of SOCS2 mRNACTDPMID:22841810
Socs2Rat1-naphthyl isothiocyanate decreases expressionEXP 64804641-Naphthylisothiocyanate results in decreased expression of SOCS2 mRNACTDPMID:30723492
Socs2Rat17beta-estradiol increases expressionISOSocs2 (Mus musculus)6480464Estradiol results in increased expression of SOCS2 mRNACTDPMID:19484750 and PMID:25210133
Socs2Rat17beta-estradiol decreases expressionISOSOCS2 (Homo sapiens)6480464Estradiol results in decreased expression of SOCS2 mRNACTDPMID:31614463
Socs2Rat17beta-estradiol affects expressionISOSocs2 (Mus musculus)6480464Estradiol affects the expression of SOCS2 mRNACTDPMID:39298647
Socs2Rat17beta-estradiol affects expressionEXP 6480464Estradiol affects the expression of SOCS2 mRNACTDPMID:32145629
Socs2Rat17beta-estradiol increases expressionISOSOCS2 (Homo sapiens)6480464Estradiol results in increased expression of SOCS2 mRNACTDPMID:17272397 and PMID:21795739
Socs2Rat17beta-estradiol multiple interactionsISOSOCS2 (Homo sapiens)6480464[Estradiol co-treated with Progesterone] results in increased expression of SOCS2 mRNACTDPMID:20660070
Socs2Rat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one increases expressionISOSOCS2 (Homo sapiens)6480464Metribolone results in increased expression of SOCS2 mRNACTDPMID:16751804
Socs2Rat17beta-hydroxy-5alpha-androstan-3-one increases expressionISOSOCS2 (Homo sapiens)6480464Dihydrotestosterone results in increased expression of SOCS2 mRNACTDPMID:29581250
Socs2Rat2,2',4,4',5,5'-hexachlorobiphenyl affects expressionISOSocs2 (Mus musculus)64804642 more ...CTDPMID:24680724
Socs2Rat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISOSocs2 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Socs2Rat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISOSocs2 (Mus musculus)6480464[2 more ...CTDPMID:25510870
Socs2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOSocs2 (Mus musculus)6480464AHR protein promotes the reaction [Tetrachlorodibenzodioxin results in increased expression of SOCS2 mRNA] more ...CTDPMID:15371557
Socs2Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of SOCS2 mRNACTDPMID:33387578
Socs2Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of SOCS2 mRNACTDPMID:34747641

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Biological Process
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Original Reference(s)
Socs2Ratcell surface receptor signaling pathway via JAK-STAT acts_upstream_ofISOSocs2 (Mus musculus)1624291MGI:97763 PMID:16469767RGDPMID:16469767
Socs2Ratcell surface receptor signaling pathway via JAK-STAT acts_upstream_ofIEAUniProtKB:O35717 and ensembl:ENSMUSP000000202151600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratcellular response to hormone stimulus involved_inISOSOCS2 (Homo sapiens)1624291 PMID:12552091RGDPMID:12552091
Socs2Ratcellular response to hormone stimulus involved_inIEAUniProtKB:O14508 and ensembl:ENSP000004492271600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratcytokine-mediated signaling pathway involved_inIBAMGI:1354910 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Socs2Ratgrowth hormone receptor signaling pathway involved_inISOSOCS2 (Homo sapiens)1624291 PMID:12552091RGDPMID:12552091
Socs2Ratgrowth hormone receptor signaling pathway involved_inIEAUniProtKB:O14508 and ensembl:ENSP000004492271600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratintracellular signal transduction involved_inIEAInterPro:IPR0360361600115GO_REF:0000002InterProGO_REF:0000002
Socs2Ratintracellular signal transduction acts_upstream_of_or_withinIEAUniProtKB:O35717 and ensembl:ENSMUSP000000202151600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratintracellular signal transduction acts_upstream_of_or_withinISOSocs2 (Mus musculus)1624291 PMID:15690087RGDPMID:15690087
Socs2Ratlactation acts_upstream_of_or_withinISOSocs2 (Mus musculus)1624291MGI:97763 PMID:11445538RGDPMID:11445538
Socs2Ratlactation acts_upstream_of_or_withinIEAUniProtKB:O35717 and ensembl:ENSMUSP000000202151600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratmammary gland alveolus development acts_upstream_of_or_withinISOSocs2 (Mus musculus)1624291MGI:97763 PMID:11445538 and PMID:16469767RGDPMID:11445538 and PMID:16469767
Socs2Ratmammary gland alveolus development acts_upstream_of_or_withinIEAUniProtKB:O35717 and ensembl:ENSMUSP000000202151600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratnegative regulation of growth hormone receptor signaling pathway involved_inISSUniProtKB:O145081600115GO_REF:0000024UniProtGO_REF:0000024
Socs2Ratnegative regulation of growth hormone receptor signaling pathway involved_inIEAUniProtKB:O14508 and ensembl:ENSP000004492271600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratnegative regulation of growth hormone receptor signaling pathway involved_inIEAUniProtKB:O35717 and ensembl:ENSMUSP000000202151600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratnegative regulation of growth hormone receptor signaling pathway involved_inISOSocs2 (Mus musculus)1624291 PMID:12040024 and PMID:15690087RGDPMID:12040024 and PMID:15690087
Socs2Ratnegative regulation of growth hormone receptor signaling pathway involved_inISOSOCS2 (Homo sapiens)1624291 PMID:21980433 more ...RGDPMID:21980433 more ...
Socs2Ratnegative regulation of multicellular organism growth acts_upstream_of_or_withinISOSocs2 (Mus musculus)1624291MGI:1934557 more ...RGDPMID:15690087
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Cellular Component

  
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Original Reference(s)
Socs2RatCul5-RING ubiquitin ligase complex part_ofISSUniProtKB:O145081600115GO_REF:0000024UniProtGO_REF:0000024
Socs2RatCul5-RING ubiquitin ligase complex part_ofIEAUniProtKB:O14508 and ensembl:ENSP000004492271600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2RatCul5-RING ubiquitin ligase complex part_ofISOSOCS2 (Homo sapiens)1624291 PMID:21980433 more ...RGDPMID:21980433 more ...
Socs2Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Socs2Ratcytoplasm is_active_inIEAUniProtKB:O14508 and ensembl:ENSP000004492271600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Socs2Ratcytoplasm is_active_inISOSOCS2 (Homo sapiens)1624291 PMID:9727029RGDPMID:9727029

Molecular Function
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Original Reference(s)
Socs2Ratcytokine receptor binding enablesIBAMGI:1201787 and PANTHER:PTN0041284131600115GO_REF:0000033GO_CentralGO_REF:0000033
Socs2Ratgrowth hormone receptor binding enablesIEAUniProtKB:O35717 and ensembl:ENSMUSP000000202151600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratgrowth hormone receptor binding enablesISOSocs2 (Mus musculus)1624291PR:P16882 PMID:15690087RGDPMID:15690087
Socs2Ratinsulin-like growth factor receptor binding enablesISOSOCS2 (Homo sapiens)1624291UniProtKB:P08069 and PMID:9727029RGDPMID:9727029
Socs2Ratinsulin-like growth factor receptor binding enablesIEAUniProtKB:O14508 and ensembl:ENSP000004492271600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratinsulin-like growth factor receptor binding enablesISSUniProtKB:O145081600115GO_REF:0000024UniProtGO_REF:0000024
Socs2Ratphosphorylation-dependent protein binding enablesISSUniProtKB:O145081600115GO_REF:0000024UniProtGO_REF:0000024
Socs2Ratphosphorylation-dependent protein binding enablesIEAUniProtKB:O14508 and ensembl:ENSP000004492271600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratphosphorylation-dependent protein binding enablesIEAUniProtKB:O35717 and ensembl:ENSMUSP000000202151600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratphosphorylation-dependent protein binding enablesISOSOCS2 (Homo sapiens)1624291 PMID:11781573 more ...RGDPMID:11781573 more ...
Socs2Ratphosphorylation-dependent protein binding enablesISOSocs2 (Mus musculus)1624291 PMID:15690087RGDPMID:15690087
Socs2Ratprotein binding enablesISOSocs2 (Mus musculus)1624291UniProtKB:P20444 more ...RGDPMID:31578312
Socs2Ratprotein binding enablesISOSOCS2 (Homo sapiens)1624291UniProtKB:O15033 more ...RGDPMID:11781573 more ...
Socs2Ratubiquitin-like ligase-substrate adaptor activity enablesISSUniProtKB:O145081600115GO_REF:0000024UniProtGO_REF:0000024
Socs2Ratubiquitin-like ligase-substrate adaptor activity enablesIEAUniProtKB:O14508 and ensembl:ENSP000004492271600115GO_REF:0000107EnsemblGO_REF:0000107
Socs2Ratubiquitin-like ligase-substrate adaptor activity enablesISOSOCS2 (Homo sapiens)1624291 PMID:11781573 more ...RGDPMID:11781573 more ...
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RGD Manual Annotations


  
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Original Reference(s)
Socs2RatJak-Stat signaling pathway   ISS 1357935 RGD 

Imported Annotations - KEGG (archival)

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Original Reference(s)
Socs2Ratinsulin signaling pathway   IEA 6907045 KEGGrno:04910
Socs2RatJak-Stat signaling pathway   IEA 6907045 KEGGrno:04630
Socs2Rattype 2 diabetes mellitus pathway   IEA 6907045 KEGGrno:04930

Imported Annotations - PID (archival)

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Original Reference(s)
Socs2Ratinterleukin-2 signaling pathway  ISOSOCS2 (Homo sapiens)6484113 PIDPID:200098

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#
Reference Title
Reference Citation
1. Methylated DNA collected by tampons--a new tool to detect endometrial cancer. Fiegl H, etal., Cancer Epidemiol Biomarkers Prev. 2004 May;13(5):882-8.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. SOCS2 induces neurite outgrowth by regulation of epidermal growth factor receptor activation. Goldshmit Y, etal., J Biol Chem 2004 Apr 16;279(16):16349-55. Epub 2004 Feb 4.
4. Aging-sensitive cellular and molecular mechanisms associated with skeletal muscle hypertrophy. Haddad F and Adams GR, J Appl Physiol. 2006 Apr;100(4):1188-203. Epub 2005 Dec 22.
5. Favorable prognostic value of SOCS2 and IGF-I in breast cancer. Haffner MC, etal., BMC Cancer. 2007 Jul 25;7:136.
6. Evolution of the androgen receptor pathway during progression of prostate cancer. Hendriksen PJ, etal., Cancer Res. 2006 May 15;66(10):5012-20.
7. Sepsis-induced muscle growth hormone resistance occurs independently of STAT5 phosphorylation. Hong-Brown LQ, etal., Am J Physiol Endocrinol Metab. 2003 Jul;285(1):E63-72. Epub 2003 Mar 18.
8. Differential expression of suppressors of cytokine signalling genes in response to nutrition and growth hormone in the septic rat. Johnson TS, etal., J Endocrinol 2001 May;169(2):409-15.
9. Signaling through the JAK/STAT pathway, recent advances and future challenges. Kisseleva T, etal., Gene 2002 Feb 20;285(1-2):1-24.
10. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
11. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
12. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
13. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
14. Suppressor of cytokine signalling gene expression is elevated in breast carcinoma. Raccurt M, etal., Br J Cancer. 2003 Aug 4;89(3):524-32.
15. GOA pipeline RGD automated data pipeline
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Comprehensive gene review and curation RGD comprehensive gene curation
18. GeneChip analysis after acute spinal cord injury in rat. Song G, etal., J Neurochem. 2001 Nov;79(4):804-15.
19. Differential hypermethylation of SOCS genes in ovarian and breast carcinomas. Sutherland KD, etal., Oncogene. 2004 Oct 7;23(46):7726-33.
20. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
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PMID:9727029   PMID:10579313   PMID:11401434   PMID:11445538   PMID:12368809   PMID:12552091   PMID:14614901   PMID:15167538   PMID:15300589   PMID:15690087   PMID:15831713   PMID:16469767  
PMID:16956890   PMID:17008382   PMID:17986523   PMID:19008912   PMID:19469688   PMID:28867579  



Socs2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8731,890,564 - 31,932,092 (-)NCBIGRCr8
mRatBN7.2730,006,360 - 30,045,161 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl730,008,578 - 30,043,548 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx732,027,095 - 32,029,699 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0734,201,426 - 34,204,033 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0733,970,650 - 33,973,258 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0736,495,496 - 36,500,878 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl736,495,480 - 36,499,784 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0736,558,014 - 36,560,623 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4732,605,714 - 32,608,323 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1732,625,999 - 32,628,594 (-)NCBI
Celera727,114,252 - 27,116,861 (-)NCBICelera
Cytogenetic Map7q13NCBI
SOCS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381293,569,969 - 93,626,236 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1293,569,814 - 93,583,487 (+)EnsemblGRCh38hg38GRCh38
GRCh371293,963,745 - 93,970,521 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361292,487,729 - 92,494,109 (+)NCBINCBI36Build 36hg18NCBI36
Build 341292,466,065 - 92,472,446NCBI
Celera1293,634,235 - 93,640,615 (+)NCBICelera
Cytogenetic Map12q22NCBI
HuRef1291,011,433 - 91,037,277 (+)NCBIHuRef
CHM1_11293,928,550 - 93,935,473 (+)NCBICHM1_1
T2T-CHM13v2.01293,551,422 - 93,607,676 (+)NCBIT2T-CHM13v2.0
Socs2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391095,219,765 - 95,253,176 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1095,221,224 - 95,253,042 (-)EnsemblGRCm39 Ensembl
GRCm381095,383,903 - 95,417,321 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1095,385,362 - 95,417,180 (-)EnsemblGRCm38mm10GRCm38
MGSCv371094,874,124 - 94,879,491 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361094,841,730 - 94,846,509 (-)NCBIMGSCv36mm8
Celera1097,386,894 - 97,392,261 (-)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1049.35NCBI
Socs2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540530,366,866 - 30,375,468 (+)EnsemblChiLan1.0
ChiLan1.0 EnsemblNW_00495540530,451,887 - 30,623,230 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540530,349,956 - 30,623,849 (+)NCBIChiLan1.0ChiLan1.0
SOCS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210101,615,299 - 101,632,031 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112101,611,649 - 101,628,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01291,115,319 - 91,134,191 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11294,514,455 - 94,520,748 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1294,514,455 - 94,520,748 (+)Ensemblpanpan1.1panPan2
SOCS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11533,761,434 - 33,788,973 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1533,785,545 - 33,877,869 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1534,233,462 - 34,239,473 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01534,451,284 - 34,457,258 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1534,451,551 - 34,494,605 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11533,731,935 - 33,737,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01533,821,213 - 33,827,198 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01534,083,449 - 34,089,425 (+)NCBIUU_Cfam_GSD_1.0
Socs2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494526,219,956 - 26,221,450 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650710,012,101 - 10,014,456 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650710,013,982 - 10,015,480 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOCS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl589,581,090 - 89,584,581 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1589,581,081 - 89,587,424 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2593,712,446 - 93,718,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SOCS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11188,964,805 - 88,971,147 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1188,966,940 - 88,971,515 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037156,190,952 - 156,197,857 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Socs2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475013,333,393 - 13,339,018 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Socs2
226 total Variants

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:21
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000011948
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 32 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1641885Alcrsp9Alcohol response QTL 9alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)72409960669099606Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72475184169751841Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72940968384928080Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat

1 to 10 of 32 rows
D7Wox52  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8731,927,841 - 31,927,986 (+)Marker Load Pipeline
mRatBN7.2730,040,966 - 30,041,111 (+)MAPPERmRatBN7.2
Rnor_6.0736,496,639 - 36,496,783NCBIRnor6.0
Rnor_5.0736,558,042 - 36,558,186UniSTSRnor5.0
RGSC_v3.4732,605,742 - 32,605,886UniSTSRGSC3.4
Celera727,114,280 - 27,114,424UniSTS
Cytogenetic Map7q13UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000011948   ⟹   ENSRNOP00000011948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl730,039,830 - 30,043,548 (-)Ensembl
Rnor_6.0 Ensembl736,495,480 - 36,499,784 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103867   ⟹   ENSRNOP00000089730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl730,008,578 - 30,043,548 (-)Ensembl
RefSeq Acc Id: NM_058208   ⟹   NP_478115
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,927,814 - 31,930,423 (-)NCBI
mRatBN7.2730,040,939 - 30,043,548 (-)NCBI
Rnor_6.0736,496,611 - 36,499,220 (-)NCBI
Rnor_5.0736,558,014 - 36,560,623 (-)NCBI
RGSC_v3.4732,605,714 - 32,608,323 (-)RGD
Celera727,114,252 - 27,116,861 (-)RGD
Sequence:
RefSeq Acc Id: XM_017595137   ⟹   XP_017450626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,926,708 - 31,932,075 (-)NCBI
mRatBN7.2730,039,832 - 30,045,156 (-)NCBI
Rnor_6.0736,495,496 - 36,500,878 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079991   ⟹   XP_038935919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,890,564 - 31,931,805 (-)NCBI
mRatBN7.2730,008,522 - 30,044,621 (-)NCBI
RefSeq Acc Id: XM_039079992   ⟹   XP_038935920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,890,564 - 31,931,098 (-)NCBI
mRatBN7.2730,008,522 - 30,044,136 (-)NCBI
RefSeq Acc Id: XM_039079993   ⟹   XP_038935921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,900,317 - 31,932,075 (-)NCBI
mRatBN7.2730,015,301 - 30,045,158 (-)NCBI
RefSeq Acc Id: XM_063264345   ⟹   XP_063120415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,926,708 - 31,931,805 (-)NCBI
RefSeq Acc Id: XM_063264346   ⟹   XP_063120416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,926,708 - 31,931,806 (-)NCBI
RefSeq Acc Id: XM_063264347   ⟹   XP_063120417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,930,281 - 31,932,092 (-)NCBI
1 to 5 of 10 rows
1 to 5 of 10 rows
RefSeq Acc Id: NP_478115   ⟸   NM_058208
- UniProtKB: O88582 (UniProtKB/Swiss-Prot),   A6IG33 (UniProtKB/TrEMBL),   A6IG31 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017450626   ⟸   XM_017595137
- Peptide Label: isoform X2
- UniProtKB: O88582 (UniProtKB/Swiss-Prot),   A6IG33 (UniProtKB/TrEMBL),   A6IG31 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011948   ⟸   ENSRNOT00000011948
RefSeq Acc Id: XP_038935919   ⟸   XM_039079991
- Peptide Label: isoform X1
- UniProtKB: A6IG31 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935920   ⟸   XM_039079992
- Peptide Label: isoform X1
- UniProtKB: A6IG31 (UniProtKB/TrEMBL)
SH2   SOCS box

Name Modeler Protein Id AA Range Protein Structure
AF-O88582-F1-model_v2 AlphaFold O88582 1-198 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 35 of 35 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-34340 BioCyc
Ensembl Genes ENSRNOG00000008965 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000103867 ENTREZGENE
  ENSRNOT00000167189 ENTREZGENE
Gene3D-CATH 3.30.505.10 UniProtKB/Swiss-Prot
  SOCS box UniProtKB/Swiss-Prot
InterPro SH2 UniProtKB/Swiss-Prot
  SH2_dom_sf UniProtKB/Swiss-Prot
  SOCS2_SH2 UniProtKB/Swiss-Prot
  SOCS_box UniProtKB/Swiss-Prot
  SOCS_box-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:84607 UniProtKB/Swiss-Prot
NCBI Gene 84607 ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT UniProtKB/Swiss-Prot
  PTHR10155:SF7 UniProtKB/Swiss-Prot
Pfam SH2 UniProtKB/Swiss-Prot
  SOCS_box UniProtKB/Swiss-Prot
PhenoGen Socs2 PhenoGen
PRINTS SH2DOMAIN UniProtKB/Swiss-Prot
PROSITE SH2 UniProtKB/Swiss-Prot
  SOCS UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000008965 RatGTEx
SMART SH2 UniProtKB/Swiss-Prot
  SOCS UniProtKB/Swiss-Prot
  SOCS_box UniProtKB/Swiss-Prot
Superfamily-SCOP SSF158235 UniProtKB/Swiss-Prot
  SSF55550 UniProtKB/Swiss-Prot
TIGR TC225712
UniProt A0A0H2UHH1_RAT UniProtKB/TrEMBL
  A0A8I6AD64 ENTREZGENE, UniProtKB/TrEMBL
  A6IG31 ENTREZGENE, UniProtKB/TrEMBL
  A6IG32_RAT UniProtKB/TrEMBL
  A6IG33 ENTREZGENE, UniProtKB/TrEMBL
  A6IG36_RAT UniProtKB/TrEMBL
  O88582 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 35 of 35 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Socs2  suppressor of cytokine signaling 2  Cish2  cytokine inducible SH2-containing protein 2  Symbol and Name updated 1299863 APPROVED
2002-06-10 Cish2  cytokine inducible SH2-containing protein 2      Name updated 70584 APPROVED

Note Type Note Reference
gene_process negative regulator of growth hormone (GH) signaling that regulates body growth postnatally and neuronal differentiation during development 1302348
gene_product member of a family of negative regulators of cytokine signalling 634752