Aplp1 (amyloid beta precursor like protein 1) - Rat Genome Database

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Gene: Aplp1 (amyloid beta precursor like protein 1) Rattus norvegicus
Analyze
Symbol: Aplp1
Name: amyloid beta precursor like protein 1
RGD ID: 69257
Description: Predicted to enable adrenergic receptor binding activity and identical protein binding activity. Predicted to be involved in cellular response to norepinephrine stimulus; negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway; and nervous system development. Predicted to act upstream of or within several processes, including cytosolic mRNA polyadenylation; extracellular matrix organization; and regulation of translation. Predicted to be located in membrane; nucleoplasm; and perinuclear region of cytoplasm. Predicted to be active in Golgi apparatus and plasma membrane. Orthologous to human APLP1 (amyloid beta precursor like protein 1); INTERACTS WITH (+)-pilocarpine; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: amyloid beta (A4) precursor-like protein 1; amyloid beta (A4) precursor-like protein 1 (mapped); amyloid-like protein 1; Aplp1_mapped; Aplp1_retired; LOC502317; RGD1561211; similar to Amyloid beta (A4) precursor-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,824,330 - 94,834,705 (-)NCBIGRCr8
mRatBN7.2185,696,880 - 85,707,215 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,696,882 - 85,707,155 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,113,388 - 91,123,714 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,579,915 - 99,590,199 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,871,656 - 92,881,982 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0188,897,525 - 88,908,750 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl188,897,532 - 88,908,750 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,053,390 - 90,063,110 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,390,217 - 85,401,952 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera180,069,348 - 80,079,276 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Aplp1RatBrugada syndrome 5  ISOAPLP1 (Homo sapiens)8554872ClinVar Annotator: match by term: Brugada syndrome 5ClinVarPMID:28492532
Aplp1Rathereditary spastic paraplegia 75  ISOAPLP1 (Homo sapiens)8554872ClinVar Annotator: match by term: Hereditary spastic paraplegia 75ClinVarPMID:28492532

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Aplp1Rat(+)-pilocarpine decreases expressionEXP 6480464Pilocarpine results in decreased expression of APLP1 mRNACTDPMID:19448684
Aplp1Rat1,2-dimethylhydrazine multiple interactionsISOAplp1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of APLP1 mRNACTDPMID:22206623
Aplp1Rat17alpha-ethynylestradiol multiple interactionsISOAplp1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of APLP1 mRNACTDPMID:17942748
Aplp1Rat17alpha-ethynylestradiol affects expressionISOAplp1 (Mus musculus)6480464Ethinyl Estradiol affects the expression of APLP1 mRNACTDPMID:17555576
Aplp1Rat17alpha-ethynylestradiol increases expressionISOAplp1 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of APLP1 mRNACTDPMID:17942748
Aplp1Rat17beta-estradiol increases expressionISOAplp1 (Mus musculus)6480464Estradiol results in increased expression of APLP1 mRNACTDPMID:22467019
Aplp1Rat17beta-estradiol multiple interactionsISOAPLP1 (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of APLP1 mRNACTDPMID:30165855
Aplp1Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:21394737
Aplp1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOAplp1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of APLP1 mRNACTDPMID:17942748
Aplp1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of APLP1 mRNACTDPMID:32109520 and PMID:33387578
Aplp1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOAplp1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of APLP1 mRNACTDPMID:17942748
Aplp1Rat3,4-methylenedioxymethamphetamine increases expressionISOAplp1 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of APLP1 mRNACTDPMID:20188158
Aplp1Rat4,4'-sulfonyldiphenol decreases methylationISOAplp1 (Mus musculus)6480464bisphenol S results in decreased methylation of APLP1 exonCTDPMID:33297965
Aplp1Rat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of APLP1 mRNACTDPMID:36041667
Aplp1Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of APLP1 mRNACTDPMID:36843608
Aplp1Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of APLP1 mRNACTDPMID:30047161
Aplp1Ratacetamide decreases expressionEXP 6480464acetamide results in decreased expression of APLP1 mRNACTDPMID:31881176
Aplp1Ratactinomycin D multiple interactionsISOAPLP1 (Homo sapiens)6480464[Dactinomycin co-treated with nutlin 3] results in increased expression of APLP1 mRNACTDPMID:38460933
Aplp1Rataflatoxin B1 affects expressionISOAPLP1 (Homo sapiens)6480464Aflatoxin B1 affects the expression of APLP1 proteinCTDPMID:20106945
Aplp1Rataflatoxin B1 decreases expressionEXP 6480464Aflatoxin B1 results in decreased expression of APLP1 mRNACTDPMID:33354967

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Biological Process
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Aplp1Rataxonogenesis involved_inIBAMGI:88059 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Aplp1Ratcellular response to norepinephrine stimulus involved_inISOAPLP1 (Homo sapiens)1624291 PMID:16531006RGDPMID:16531006
Aplp1Ratcellular response to norepinephrine stimulus involved_inIEAUniProtKB:P51693 and ensembl:ENSP000002218911600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratcentral nervous system development involved_inIBAFB:FBgn0000108 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Aplp1Ratcytosolic mRNA polyadenylation acts_upstream_of_or_withinISOAplp1 (Mus musculus)1624291 PMID:16314516RGDPMID:16314516
Aplp1Ratcytosolic mRNA polyadenylation acts_upstream_of_or_withinIEAUniProtKB:Q03157 and ensembl:ENSMUSP000000068281600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratextracellular matrix organization acts_upstream_of_or_withinISOAplp1 (Mus musculus)1624291MGI:88047 more ...RGDPMID:15385965
Aplp1Ratextracellular matrix organization acts_upstream_of_or_withinIEAUniProtKB:Q03157 and ensembl:ENSMUSP000000068281600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratforebrain development acts_upstream_of_or_withinISOAplp1 (Mus musculus)1624291MGI:88047 more ...RGDPMID:15385965
Aplp1Ratforebrain development acts_upstream_of_or_withinIEAUniProtKB:Q03157 and ensembl:ENSMUSP000000068281600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratnegative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway involved_inISOAPLP1 (Homo sapiens)1624291 PMID:16531006RGDPMID:16531006
Aplp1Ratnegative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway involved_inIEAUniProtKB:P51693 and ensembl:ENSP000002218911600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratregulation of translation acts_upstream_of_or_withinISOAplp1 (Mus musculus)1624291 PMID:16314516RGDPMID:16314516
Aplp1Ratregulation of translation acts_upstream_of_or_withinIEAUniProtKB:Q03157 and ensembl:ENSMUSP000000068281600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
Aplp1Ratendomembrane system located_inIEAARBA:ARBA000289531600115GO_REF:0000117UniProtGO_REF:0000117
Aplp1RatGolgi apparatus located_inISOAPLP1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Aplp1RatGolgi apparatus located_inIEAUniProtKB:P51693 and ensembl:ENSP000002218911600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1RatGolgi apparatus located_inIEAUniProtKB:Q03157 and ensembl:ENSMUSP000000068281600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1RatGolgi apparatus is_active_inIBAMGI:88046 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Aplp1RatGolgi apparatus located_inISOAplp1 (Mus musculus)1624291 PMID:1279693RGDPMID:1279693
Aplp1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Aplp1Ratmembrane located_inISOAplp1 (Mus musculus)1624291 PMID:16314516RGDPMID:16314516
Aplp1Ratmembrane located_inIEAUniProtKB:Q03157 and ensembl:ENSMUSP000000068281600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Aplp1Ratmembrane located_inIEAInterPro:IPR0081551600115GO_REF:0000002InterProGO_REF:0000002
Aplp1Ratnucleoplasm located_inIEAUniProtKB:P51693 and ensembl:ENSP000002218911600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratnucleoplasm located_inISOAPLP1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Aplp1Ratperinuclear region of cytoplasm located_inISOAPLP1 (Homo sapiens)1624291 PMID:16531006RGDPMID:16531006
Aplp1Ratperinuclear region of cytoplasm located_inIEAUniProtKB:P51693 and ensembl:ENSP000002218911600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratplasma membrane located_inISOAPLP1 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Aplp1Ratplasma membrane is_active_inIBAPANTHER:PTN002749597 and UniProtKB:P516931600115GO_REF:0000033GO_CentralGO_REF:0000033
Aplp1Ratplasma membrane located_inIEAUniProtKB:P51693 and ensembl:ENSP000002218911600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratplasma membrane located_inISOAPLP1 (Homo sapiens)1624291 PMID:16531006RGDPMID:16531006
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Molecular Function
1 to 18 of 18 rows

  
Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Aplp1Ratalpha-2A adrenergic receptor binding enablesISOAPLP1 (Homo sapiens)1624291UniProtKB:P08913 and PMID:16531006RGDPMID:16531006
Aplp1Ratalpha-2A adrenergic receptor binding enablesIBAPANTHER:PTN002749597 and UniProtKB:P516931600115GO_REF:0000033GO_CentralGO_REF:0000033
Aplp1Ratalpha-2A adrenergic receptor binding enablesIEAUniProtKB:P51693 and ensembl:ENSP000002218911600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratalpha-2B adrenergic receptor binding enablesISOAPLP1 (Homo sapiens)1624291UniProtKB:P18089 and PMID:16531006RGDPMID:16531006
Aplp1Ratalpha-2B adrenergic receptor binding enablesIEAUniProtKB:P51693 and ensembl:ENSP000002218911600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratalpha-2B adrenergic receptor binding enablesIBAPANTHER:PTN002749597 and UniProtKB:P516931600115GO_REF:0000033GO_CentralGO_REF:0000033
Aplp1Ratalpha-2C adrenergic receptor binding enablesISOAPLP1 (Homo sapiens)1624291UniProtKB:P18825 and PMID:16531006RGDPMID:16531006
Aplp1Ratalpha-2C adrenergic receptor binding enablesIBAPANTHER:PTN002749597 and UniProtKB:P516931600115GO_REF:0000033GO_CentralGO_REF:0000033
Aplp1Ratalpha-2C adrenergic receptor binding enablesIEAUniProtKB:P51693 and ensembl:ENSP000002218911600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratheparin binding enablesIEAUniRule:UR0009767701600115GO_REF:0000104UniProtGO_REF:0000104
Aplp1Ratheparin binding enablesIEAInterPro:IPR015849 and InterPro:IPR0364541600115GO_REF:0000002InterProGO_REF:0000002
Aplp1Ratidentical protein binding enablesISOAPLP1 (Homo sapiens)1624291UniProtKB:P51693 more ...RGDPMID:16193067 and PMID:21930949
Aplp1Ratidentical protein binding enablesIEAUniProtKB:P51693 and ensembl:ENSP000002218911600115GO_REF:0000107EnsemblGO_REF:0000107
Aplp1Ratprotein binding  IPIApbb1 (Rattus norvegicus)634556 RGD 
Aplp1Ratprotein binding enablesISOAplp1 (Mus musculus)1624291PR:P70166 more ...RGDPMID:10460257 more ...
Aplp1Ratprotein binding enablesISOAPLP1 (Homo sapiens)1624291UniProtKB:P05067-4 more ...RGDPMID:16169070 more ...
Aplp1Ratprotein binding  IPIApbb3 (Rattus norvegicus)634556 RGD 
Aplp1Rattransition metal ion binding enablesIEAInterPro:IPR011178 and InterPro:IPR0366691600115GO_REF:0000002InterProGO_REF:0000002
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#
Reference Title
Reference Citation
1. Fe65L2: a new member of the Fe65 protein family interacting with the intracellular domain of the Alzheimer's beta-amyloid precursor protein. Duilio A, etal., Biochem J 1998 Feb 15;330 ( Pt 1):513-9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Comparative expressed-sequence-tag analysis of differential gene expression profiles in PC-12 cells before and after nerve growth factor treatment. Lee NH, etal., Proc Natl Acad Sci U S A 1995 Aug 29;92(18):8303-7.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:1279693   PMID:12477932   PMID:15385965   PMID:16193067   PMID:16314516   PMID:16531006   PMID:21930949   PMID:25683482  



Aplp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,824,330 - 94,834,705 (-)NCBIGRCr8
mRatBN7.2185,696,880 - 85,707,215 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,696,882 - 85,707,155 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,113,388 - 91,123,714 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,579,915 - 99,590,199 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,871,656 - 92,881,982 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0188,897,525 - 88,908,750 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl188,897,532 - 88,908,750 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,053,390 - 90,063,110 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,390,217 - 85,401,952 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera180,069,348 - 80,079,276 (-)NCBICelera
Cytogenetic Map1q21NCBI
APLP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,868,574 - 35,879,792 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,867,899 - 35,879,803 (+)EnsemblGRCh38hg38GRCh38
GRCh371936,359,476 - 36,370,694 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361941,051,241 - 41,062,539 (+)NCBINCBI36Build 36hg18NCBI36
Build 341941,051,309 - 41,062,530NCBI
Celera1933,073,585 - 33,084,883 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,864,721 - 32,875,938 (+)NCBIHuRef
CHM1_11936,360,683 - 36,371,980 (+)NCBICHM1_1
T2T-CHM13v2.01938,414,328 - 38,425,546 (+)NCBIT2T-CHM13v2.0
Aplp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,134,405 - 30,144,960 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,134,407 - 30,144,960 (-)EnsemblGRCm39 Ensembl
GRCm38730,434,980 - 30,445,582 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,434,982 - 30,445,535 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,220,001 - 31,230,580 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,143,742 - 30,154,321 (-)NCBIMGSCv36mm8
Celera725,026,598 - 25,037,193 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map718.32NCBI
Aplp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,694,591 - 2,703,656 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,694,286 - 2,703,658 (-)NCBIChiLan1.0ChiLan1.0
APLP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,867,959 - 41,879,251 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,852,723 - 43,864,012 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,786,362 - 32,797,728 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,534,776 - 41,545,908 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,534,569 - 41,545,906 (+)Ensemblpanpan1.1panPan2
APLP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,774,392 - 116,783,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,728,529 - 116,783,046 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,179,958 - 116,188,648 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,377,571 - 117,386,261 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,377,575 - 117,386,219 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11116,941,125 - 116,949,814 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,564,643 - 116,573,333 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,620,429 - 117,629,122 (-)NCBIUU_Cfam_GSD_1.0
Aplp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,161,610 - 11,170,431 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936570474,902 - 484,188 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936570475,446 - 484,379 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APLP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,285,718 - 45,295,350 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,285,698 - 45,295,355 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,669,837 - 40,672,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APLP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,780,112 - 30,791,582 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,780,085 - 30,791,636 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660738,572,301 - 8,583,860 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aplp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479410,148,522 - 10,167,543 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479410,148,575 - 10,158,101 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Aplp1
70 total Variants

Predicted Target Of
Summary Value
Count of predictions:238
Count of miRNA genes:142
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000028297
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 39 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat

1 to 10 of 39 rows
D1Bda13  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2185,697,170 - 85,697,453 (+)MAPPERmRatBN7.2
Rnor_6.0188,897,814 - 88,898,096NCBIRnor6.0
Rnor_5.0190,053,673 - 90,053,955UniSTSRnor5.0
RGSC_v3.4185,390,508 - 85,390,790UniSTSRGSC3.4
Celera180,069,631 - 80,069,913UniSTS
Cytogenetic Map1q21UniSTS
RH135017  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2185,697,011 - 85,697,196 (+)MAPPERmRatBN7.2
Rnor_6.0188,897,655 - 88,897,839NCBIRnor6.0
Rnor_5.0190,053,514 - 90,053,698UniSTSRnor5.0
RGSC_v3.4185,390,349 - 85,390,533UniSTSRGSC3.4
Celera180,069,472 - 80,069,656UniSTS
RH 3.4 Map1848.9UniSTS
Cytogenetic Map1q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000028297   ⟹   ENSRNOP00000028297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,696,882 - 85,707,155 (-)Ensembl
Rnor_6.0 Ensembl188,897,532 - 88,908,750 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106909   ⟹   ENSRNOP00000092071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,696,882 - 85,707,155 (-)Ensembl
RefSeq Acc Id: NM_001100802   ⟹   NP_001094272
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,824,330 - 94,834,610 (-)NCBI
mRatBN7.2185,696,880 - 85,707,160 (-)NCBI
Rnor_6.0188,897,531 - 88,908,750 (-)NCBI
Celera180,069,348 - 80,079,276 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001399814   ⟹   NP_001386743
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,824,330 - 94,834,610 (-)NCBI
mRatBN7.2185,696,880 - 85,707,160 (-)NCBI
RefSeq Acc Id: XM_039088308   ⟹   XP_038944236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,824,332 - 94,834,705 (-)NCBI
mRatBN7.2185,696,880 - 85,707,215 (-)NCBI
1 to 10 of 10 rows
Protein RefSeqs NP_001094272 (Get FASTA)   NCBI Sequence Viewer  
  NP_001386743 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944236 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI61904 (Get FASTA)   NCBI Sequence Viewer  
  ABE73148 (Get FASTA)   NCBI Sequence Viewer  
  EDM07760 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000028297
  ENSRNOP00000028297.5
  ENSRNOP00000092071
  ENSRNOP00000092071.1
1 to 10 of 10 rows
RefSeq Acc Id: NP_001094272   ⟸   NM_001100802
- Peptide Label: isoform 2 precursor
- UniProtKB: B1WBV6 (UniProtKB/TrEMBL),   F1LRS5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028297   ⟸   ENSRNOT00000028297
RefSeq Acc Id: XP_038944236   ⟸   XM_039088308
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AD03 (UniProtKB/TrEMBL),   F1LRS5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092071   ⟸   ENSRNOT00000106909
RefSeq Acc Id: NP_001386743   ⟸   NM_001399814
- Peptide Label: isoform 1 precursor
- UniProtKB: A6J9X4 (UniProtKB/TrEMBL),   F1LRS5 (UniProtKB/TrEMBL)
Name Modeler Protein Id AA Range Protein Structure
AF-F1LRS5-F1-model_v2 AlphaFold F1LRS5 1-639 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689917
Promoter ID:EPDNEW_R440
Type:single initiation site
Name:Aplp1_1
Description:amyloid beta precursor like protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0188,908,776 - 88,908,836EPDNEW


1 to 40 of 44 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60110 BioCyc
Ensembl Genes ENSRNOG00000020851 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028297 ENTREZGENE
  ENSRNOT00000028297.6 UniProtKB/TrEMBL
  ENSRNOT00000106909 ENTREZGENE
  ENSRNOT00000106909.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.770 UniProtKB/TrEMBL
  3.30.1490.140 UniProtKB/TrEMBL
  3.90.570.10 UniProtKB/TrEMBL
InterPro Amyloid_Cu-bd_sf UniProtKB/TrEMBL
  Amyloid_glyco UniProtKB/TrEMBL
  Amyloid_glyco_Cu-bd UniProtKB/TrEMBL
  Amyloid_glyco_E2_domain UniProtKB/TrEMBL
  Amyloid_glyco_extra UniProtKB/TrEMBL
  Amyloid_glyco_extracell_CS UniProtKB/TrEMBL
  Amyloid_glyco_heparin-bd UniProtKB/TrEMBL
  Amyloid_glyco_heparin-bd_sf UniProtKB/TrEMBL
  Amyloid_glyco_intracell_CS UniProtKB/TrEMBL
  APP_amyloid UniProtKB/TrEMBL
  E2_sf UniProtKB/TrEMBL
KEGG Report rno:502317 UniProtKB/TrEMBL
NCBI Gene Aplp1 ENTREZGENE
PANTHER AMYLOID-LIKE PROTEIN 1 UniProtKB/TrEMBL
  PTHR23103 UniProtKB/TrEMBL
Pfam APP_amyloid UniProtKB/TrEMBL
  APP_Cu_bd UniProtKB/TrEMBL
  APP_E2 UniProtKB/TrEMBL
  APP_N UniProtKB/TrEMBL
PhenoGen Aplp1 PhenoGen
PRINTS AMYLOIDA4 UniProtKB/TrEMBL
PROSITE A4_EXTRA UniProtKB/TrEMBL
  A4_INTRA UniProtKB/TrEMBL
  APP_E1 UniProtKB/TrEMBL
  APP_E2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020851 RatGTEx
SMART A4_EXTRA UniProtKB/TrEMBL
Superfamily-SCOP A4_extra UniProtKB/TrEMBL
  Amyloid_glyco_Cu-bd UniProtKB/TrEMBL
  SSF109843 UniProtKB/TrEMBL
UniProt A0A8I6AD03 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 44 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-27 Aplp1  amyloid beta precursor like protein 1  Aplp1  amyloid beta (A4) precursor-like protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-04 Aplp1  amyloid beta (A4) precursor-like protein 1  RGD1561211  similar to Amyloid beta (A4) precursor-like protein 1   Data merged from RGD:1561211 737654 APPROVED
2008-04-30 RGD1561211  similar to Amyloid beta (A4) precursor-like protein 1   RGD1561211_predicted  similar to Amyloid beta (A4) precursor-like protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2007-04-13   amyloid beta (A4) precursor-like protein 1  Aplp1  amyloid beta (A4) precursor-like protein 1 (mapped)  Name updated 737654 APPROVED
2007-04-10 Aplp1    Aplp1_mapped  amyloid beta (A4) precursor-like protein 1 (mapped)  Symbol updated 737654 APPROVED
2006-11-19 Aplp1_mapped  amyloid beta (A4) precursor-like protein 1(mapped)  Aplp1  amyloid beta (A4) precursor-like protein 1  Symbol set to symbol_mapped, name set to name (mapped) 1582166 APPROVED
2006-11-19 Aplp1  amyloid beta (A4) precursor-like protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1561211_predicted  similar to Amyloid beta (A4) precursor-like protein 1 (predicted)  LOC502317  similar to Amyloid beta (A4) precursor-like protein 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502317  similar to Amyloid beta (A4) precursor-like protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Aplp1  amyloid beta (A4) precursor-like protein 1      Name updated 70584 APPROVED

Note Type Note Reference