Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | hypotrichosis | | ISO | RPL21 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | hypotrichosis | | ISO | RPL21 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
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# | Reference Title | Reference Citation |
1. | Structures of the human and Drosophila 80S ribosome. | Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104. |
2. | The primary structure of rat ribosomal protein L21. | Devi KR, etal., Biochem Biophys Res Commun 1989 Jul 14;162(1):364-70. |
3. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
4. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
5. | Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. | Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35. |
6. | Electronic Transfer of LocusLink and RefSeq Data | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
7. | GOA pipeline | RGD automated data pipeline |
8. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
9. | Comprehensive gene review and curation | RGD comprehensive gene curation |
10. | Tentative Sequence Identification Numbers | Tentative Sequence Data IDs. TIGR Gene Index, Rat Data |
11. | Identification of neighboring protein pairs in rat liver 60S ribosomal subunits cross-linked with dimethyl suberimidate or dimethyl 3,3'-dithiobispropionimidate. | Uchiumi T, etal., J Biochem. 1980 Oct;88(4):1033-44. |
PMID:12477932 | PMID:12962325 | PMID:16854843 | PMID:19946888 | PMID:22658674 | PMID:22681889 |
Rpl21 (Rattus norvegicus - Norway rat) |
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RPL21 (Homo sapiens - human) |
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Rpl21 (Mus musculus - house mouse) |
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Rpl21 (Chinchilla lanigera - long-tailed chinchilla) |
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RPL21 (Pan paniscus - bonobo/pygmy chimpanzee) |
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RPL21 (Canis lupus familiaris - dog) |
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Rpl21 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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RPL21 (Sus scrofa - pig) |
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RPL21 (Chlorocebus sabaeus - green monkey) |
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Rpl21 (Heterocephalus glaber - naked mole-rat) |
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Variants in Rpl21
11 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | 2 | 28 | 22 | 22 | 3 | 22 | 51 | 20 | 28 | 2 | |||
Medium | 4 | 58 | 92 | 60 | 35 | 60 | 16 | 22 | 97 | 50 | 53 | 20 | 16 |
Low | 5 | 5 | 15 | 2 | 14 | 2 | 2 | 14 | 11 | 23 | 13 | ||
Below cutoff | 37 | 39 | 37 | 7 | 37 | 6 | 9 | 40 | 21 | 20 | 1 | 6 |
RefSeq Transcripts | NM_001408995 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001408996 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001408997 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001408998 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001409000 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_053330 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC058459 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC086441 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH474012 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ213171 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ217086 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ217504 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ221902 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ222392 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ223144 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ224800 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ228557 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ232203 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000012 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
M27905 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000001265 ⟹ ENSRNOP00000001265 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000040249 ⟹ ENSRNOP00000051312 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000046791 ⟹ ENSRNOP00000048808 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000047936 ⟹ ENSRNOP00000041966 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000099991 ⟹ ENSRNOP00000083763 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001408995 ⟹ NP_001395924 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001408996 ⟹ NP_001395925 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001408997 ⟹ NP_001395926 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001408998 ⟹ NP_001395927 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001409000 ⟹ NP_001395929 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_053330 ⟹ NP_445782 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001395924 | (Get FASTA) | NCBI Sequence Viewer |
NP_001395925 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001395926 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001395927 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001395929 | (Get FASTA) | NCBI Sequence Viewer | |
NP_445782 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAA41504 | (Get FASTA) | NCBI Sequence Viewer |
AAH58459 | (Get FASTA) | NCBI Sequence Viewer | |
AAH86441 | (Get FASTA) | NCBI Sequence Viewer | |
EDL89578 | (Get FASTA) | NCBI Sequence Viewer | |
EDL89579 | (Get FASTA) | NCBI Sequence Viewer | |
EDL89580 | (Get FASTA) | NCBI Sequence Viewer | |
EDL89581 | (Get FASTA) | NCBI Sequence Viewer | |
EDL89582 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000001265 | ||
ENSRNOP00000001265.4 | |||
ENSRNOP00000046409.1 | |||
ENSRNOP00000048808.1 | |||
ENSRNOP00000051312.1 | |||
ENSRNOP00000083763 | |||
ENSRNOP00000083763.1 | |||
GenBank Protein | P20280 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_445782 ⟸ NM_053330 |
- UniProtKB: | Q6PDW2 (UniProtKB/TrEMBL), A6K1C0 (UniProtKB/TrEMBL), D3ZPN7 (UniProtKB/TrEMBL), A6K1C4 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000041966 ⟸ ENSRNOT00000047936 |
RefSeq Acc Id: | ENSRNOP00000048808 ⟸ ENSRNOT00000046791 |
RefSeq Acc Id: | ENSRNOP00000001265 ⟸ ENSRNOT00000001265 |
RefSeq Acc Id: | ENSRNOP00000051312 ⟸ ENSRNOT00000040249 |
RefSeq Acc Id: | ENSRNOP00000083763 ⟸ ENSRNOT00000099991 |
RefSeq Acc Id: | NP_001395924 ⟸ NM_001408995 |
- UniProtKB: | Q6PDW2 (UniProtKB/TrEMBL), A6K1C0 (UniProtKB/TrEMBL), D3ZPN7 (UniProtKB/TrEMBL), A6K1C4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001395929 ⟸ NM_001409000 |
- UniProtKB: | Q6PDW2 (UniProtKB/TrEMBL), A6K1C0 (UniProtKB/TrEMBL), D3ZPN7 (UniProtKB/TrEMBL), A6K1C4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001395927 ⟸ NM_001408998 |
- UniProtKB: | Q6PDW2 (UniProtKB/TrEMBL), A6K1C0 (UniProtKB/TrEMBL), D3ZPN7 (UniProtKB/TrEMBL), A6K1C4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001395925 ⟸ NM_001408996 |
- UniProtKB: | Q6PDW2 (UniProtKB/TrEMBL), A6K1C0 (UniProtKB/TrEMBL), D3ZPN7 (UniProtKB/TrEMBL), A6K1C4 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001395926 ⟸ NM_001408997 |
- UniProtKB: | Q6PDW2 (UniProtKB/TrEMBL), A6K1C0 (UniProtKB/TrEMBL), D3ZPN7 (UniProtKB/TrEMBL), A6K1C4 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-P20280-F1-model_v2 | AlphaFold | P20280 | 1-160 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:68390 | AgrOrtholog |
BioCyc Gene | G2FUF-20096 | BioCyc |
Ensembl Genes | ENSRNOG00000000957 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
ENSRNOG00000029410 | Ensembl, UniProtKB/TrEMBL | |
ENSRNOG00000032803 | Ensembl | |
ENSRNOG00000049848 | Ensembl | |
ENSRNOG00000066953 | UniProtKB/TrEMBL | |
ENSRNOG00000069969 | Ensembl, UniProtKB/TrEMBL | |
Ensembl Transcript | ENSRNOT00000001265 | ENTREZGENE |
ENSRNOT00000001265.6 | UniProtKB/TrEMBL | |
ENSRNOT00000040249.2 | UniProtKB/TrEMBL | |
ENSRNOT00000046791.2 | UniProtKB/TrEMBL | |
ENSRNOT00000049571.2 | UniProtKB/TrEMBL | |
ENSRNOT00000099991 | ENTREZGENE | |
ENSRNOT00000099991.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 2.30.30.70 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
6.10.250.3260 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
IMAGE_CLONE | IMAGE:6918772 | IMAGE-MGC_LOAD |
IMAGE:7303531 | IMAGE-MGC_LOAD | |
InterPro | Ribosomal_L21_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ribosomal_L21e | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Ribosomal_L21e_CS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Translation_prot_SH3-like_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:79449 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
MGC_CLONE | MGC:105377 | IMAGE-MGC_LOAD |
MGC:72750 | IMAGE-MGC_LOAD | |
NCBI Gene | 79449 | ENTREZGENE |
PANTHER | 60S RIBOSOMAL PROTEIN L21 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR20981 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Ribosomal_L21e | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Rpl21 | PhenoGen |
PROSITE | RIBOSOMAL_L21E | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000000957 | RatGTEx |
ENSRNOG00000029410 | RatGTEx | |
ENSRNOG00000032803 | RatGTEx | |
ENSRNOG00000049848 | RatGTEx | |
ENSRNOG00000066953 | RatGTEx | |
ENSRNOG00000069969 | RatGTEx | |
Superfamily-SCOP | SSF50104 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
TIGR | TC203946 | |
UniProt | A6K1C0 | ENTREZGENE |
A6K1C4 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZPN7 | ENTREZGENE, UniProtKB/TrEMBL | |
F7ELM8_RAT | UniProtKB/TrEMBL | |
P20280 | ENTREZGENE | |
Q6PDW2 | ENTREZGENE, UniProtKB/TrEMBL | |
RL21_RAT | UniProtKB/Swiss-Prot | |
UniProt Secondary | A6K1C0 | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2002-06-10 | Rpl21 | ribosomal protein L21 | Name updated | 70584 | APPROVED |
Note Type | Note | Reference |
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gene_other | gene may be present in 16-23 copies | 68298 |