Rpl21 (ribosomal protein L21) - Rat Genome Database

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Gene: Rpl21 (ribosomal protein L21) Rattus norvegicus
Analyze
Symbol: Rpl21 (Ensembl: LOC108348870)
Name: ribosomal protein L21 (Ensembl:60S ribosomal protein L21-like)
RGD ID: 68390
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Located in ribosome. Part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in hypotrichosis 12. Orthologous to human RPL21 (ribosomal protein L21); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L21; large ribosomal subunit protein eL21
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Rpl21-ps1   Rpl21-ps2   Rpl21-ps25   Rpl21-ps3  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,382,516 - 13,386,153 (-)NCBIGRCr8
mRatBN7.2128,268,641 - 8,272,278 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1326,396,173 - 26,396,732 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl388,512,435 - 88,512,917 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl128,267,196 - 8,272,281 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,070,396 - 9,073,473 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0129,693,575 - 9,696,652 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,717,016 - 8,720,093 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,996,919 - 9,999,998 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,996,951 - 9,998,779 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1330,799,969 - 30,800,451 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX10,430,847 - 10,431,400 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl391,870,208 - 91,870,690 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01212,104,705 - 12,107,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4128,716,675 - 8,719,754 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1128,746,602 - 8,749,682 (-)NCBI
Celera1210,086,177 - 10,089,256 (-)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-tribromophenol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzene  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorohydrocarbon  (EXP)
chloropicrin  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichlorine  (EXP)
dicrotophos  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
hydrogen peroxide  (ISO)
indometacin  (EXP,ISO)
inulin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
methidathion  (ISO)
methotrexate  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (EXP)
potassium dichromate  (ISO)
Propiverine  (EXP)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
titanium dioxide  (ISO)
triptonide  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein L21. Devi KR, etal., Biochem Biophys Res Commun 1989 Jul 14;162(1):364-70.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
11. Identification of neighboring protein pairs in rat liver 60S ribosomal subunits cross-linked with dimethyl suberimidate or dimethyl 3,3'-dithiobispropionimidate. Uchiumi T, etal., J Biochem. 1980 Oct;88(4):1033-44.
Additional References at PubMed
PMID:12477932   PMID:12962325   PMID:16854843   PMID:19946888   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Rpl21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,382,516 - 13,386,153 (-)NCBIGRCr8
mRatBN7.2128,268,641 - 8,272,278 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1326,396,173 - 26,396,732 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl388,512,435 - 88,512,917 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl128,267,196 - 8,272,281 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,070,396 - 9,073,473 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0129,693,575 - 9,696,652 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,717,016 - 8,720,093 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,996,919 - 9,999,998 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,996,951 - 9,998,779 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1330,799,969 - 30,800,451 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 EnsemblX10,430,847 - 10,431,400 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl391,870,208 - 91,870,690 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01212,104,705 - 12,107,784 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4128,716,675 - 8,719,754 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1128,746,602 - 8,749,682 (-)NCBI
Celera1210,086,177 - 10,089,256 (-)NCBICelera
Cytogenetic Map12p11NCBI
RPL21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381327,251,558 - 27,256,568 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1327,251,362 - 27,256,691 (+)EnsemblGRCh38hg38GRCh38
GRCh371327,825,695 - 27,830,705 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361326,723,692 - 26,728,705 (+)NCBINCBI36Build 36hg18NCBI36
Build 341326,723,705 - 26,728,700NCBI
Celera138,894,559 - 8,899,578 (+)NCBICelera
Cytogenetic Map13q12.2NCBI
HuRef138,647,762 - 8,652,781 (+)NCBIHuRef
CHM1_11327,794,141 - 27,799,154 (+)NCBICHM1_1
T2T-CHM13v2.01326,472,273 - 26,477,291 (+)NCBIT2T-CHM13v2.0
Rpl21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395146,769,955 - 146,773,842 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5146,769,700 - 146,773,842 (+)EnsemblGRCm39 Ensembl
GRCm385146,832,890 - 146,837,032 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5146,832,890 - 146,837,032 (+)EnsemblGRCm38mm10GRCm38
MGSCv375147,644,466 - 147,648,608 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365147,143,494 - 147,147,379 (+)NCBIMGSCv36mm8
Celera5144,819,590 - 144,823,759 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map586.5NCBI
Rpl21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554976,678,965 - 6,681,419 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554976,676,584 - 6,681,776 (+)NCBIChiLan1.0ChiLan1.0
RPL21
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21426,847,690 - 26,852,933 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11317,956,448 - 17,965,606 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0138,541,343 - 8,546,709 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11326,886,986 - 26,892,281 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1326,886,986 - 26,892,281 (+)Ensemblpanpan1.1panPan2
RPL21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12512,326,376 - 12,331,398 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2512,326,376 - 12,331,398 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2512,389,740 - 12,394,762 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02512,458,136 - 12,463,158 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2512,458,141 - 12,463,107 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12512,349,127 - 12,354,148 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02512,343,987 - 12,349,005 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02512,388,862 - 12,393,884 (-)NCBIUU_Cfam_GSD_1.0
Rpl21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945173,413,856 - 173,428,685 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647222,523,470 - 22,538,299 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl114,731,986 - 4,738,489 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1114,731,747 - 4,736,177 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2114,197,563 - 4,201,966 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL21
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.136,445,194 - 6,457,763 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605737,952,260 - 37,957,387 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl21
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477611,262,473 - 11,267,929 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477611,262,214 - 11,267,951 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpl21
11 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:137
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000001265, ENSRNOT00000040249, ENSRNOT00000046791, ENSRNOT00000047936
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 28 22 22 3 22 51 20 28 2
Medium 4 58 92 60 35 60 16 22 97 50 53 20 16
Low 5 5 15 2 14 2 2 14 11 23 13
Below cutoff 37 39 37 7 37 6 9 40 21 20 1 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001408995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000001265   ⟹   ENSRNOP00000001265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl128,269,265 - 8,272,257 (-)Ensembl
Rnor_6.0 Ensembl129,996,951 - 9,998,779 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000040249   ⟹   ENSRNOP00000051312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl388,512,435 - 88,512,917 (+)Ensembl
Rnor_6.0 Ensembl391,870,208 - 91,870,690 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000046791   ⟹   ENSRNOP00000048808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1326,396,173 - 26,396,732 (-)Ensembl
Rnor_6.0 Ensembl1330,799,969 - 30,800,451 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000047936   ⟹   ENSRNOP00000041966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX10,430,847 - 10,431,400 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099991   ⟹   ENSRNOP00000083763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl128,267,196 - 8,272,281 (-)Ensembl
RefSeq Acc Id: NM_001408995   ⟹   NP_001395924
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,382,516 - 13,386,153 (-)NCBI
mRatBN7.2128,268,641 - 8,272,278 (-)NCBI
RefSeq Acc Id: NM_001408996   ⟹   NP_001395925
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,382,516 - 13,386,153 (-)NCBI
mRatBN7.2128,268,641 - 8,272,278 (-)NCBI
RefSeq Acc Id: NM_001408997   ⟹   NP_001395926
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,382,516 - 13,386,153 (-)NCBI
mRatBN7.2128,268,641 - 8,272,278 (-)NCBI
RefSeq Acc Id: NM_001408998   ⟹   NP_001395927
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,382,516 - 13,386,153 (-)NCBI
mRatBN7.2128,268,641 - 8,272,278 (-)NCBI
RefSeq Acc Id: NM_001409000   ⟹   NP_001395929
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,382,516 - 13,386,153 (-)NCBI
mRatBN7.2128,268,641 - 8,272,278 (-)NCBI
RefSeq Acc Id: NM_053330   ⟹   NP_445782
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,382,516 - 13,386,153 (-)NCBI
mRatBN7.2128,268,641 - 8,272,278 (-)NCBI
Rnor_6.0129,996,919 - 9,999,998 (-)NCBI
Rnor_5.01212,104,705 - 12,107,784 (-)NCBI
RGSC_v3.4128,716,675 - 8,719,754 (-)RGD
Celera1210,086,177 - 10,089,256 (-)RGD
Sequence:
RefSeq Acc Id: NP_445782   ⟸   NM_053330
- UniProtKB: Q6PDW2 (UniProtKB/TrEMBL),   A6K1C0 (UniProtKB/TrEMBL),   D3ZPN7 (UniProtKB/TrEMBL),   A6K1C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000041966   ⟸   ENSRNOT00000047936
RefSeq Acc Id: ENSRNOP00000048808   ⟸   ENSRNOT00000046791
RefSeq Acc Id: ENSRNOP00000001265   ⟸   ENSRNOT00000001265
RefSeq Acc Id: ENSRNOP00000051312   ⟸   ENSRNOT00000040249
RefSeq Acc Id: ENSRNOP00000083763   ⟸   ENSRNOT00000099991
RefSeq Acc Id: NP_001395924   ⟸   NM_001408995
- UniProtKB: Q6PDW2 (UniProtKB/TrEMBL),   A6K1C0 (UniProtKB/TrEMBL),   D3ZPN7 (UniProtKB/TrEMBL),   A6K1C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395929   ⟸   NM_001409000
- UniProtKB: Q6PDW2 (UniProtKB/TrEMBL),   A6K1C0 (UniProtKB/TrEMBL),   D3ZPN7 (UniProtKB/TrEMBL),   A6K1C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395927   ⟸   NM_001408998
- UniProtKB: Q6PDW2 (UniProtKB/TrEMBL),   A6K1C0 (UniProtKB/TrEMBL),   D3ZPN7 (UniProtKB/TrEMBL),   A6K1C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395925   ⟸   NM_001408996
- UniProtKB: Q6PDW2 (UniProtKB/TrEMBL),   A6K1C0 (UniProtKB/TrEMBL),   D3ZPN7 (UniProtKB/TrEMBL),   A6K1C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395926   ⟸   NM_001408997
- UniProtKB: Q6PDW2 (UniProtKB/TrEMBL),   A6K1C0 (UniProtKB/TrEMBL),   D3ZPN7 (UniProtKB/TrEMBL),   A6K1C4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P20280-F1-model_v2 AlphaFold P20280 1-160 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68390 AgrOrtholog
BioCyc Gene G2FUF-20096 BioCyc
Ensembl Genes ENSRNOG00000000957 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000029410 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000032803 Ensembl
  ENSRNOG00000049848 Ensembl
  ENSRNOG00000066953 UniProtKB/TrEMBL
  ENSRNOG00000069969 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001265 ENTREZGENE
  ENSRNOT00000001265.6 UniProtKB/TrEMBL
  ENSRNOT00000040249.2 UniProtKB/TrEMBL
  ENSRNOT00000046791.2 UniProtKB/TrEMBL
  ENSRNOT00000049571.2 UniProtKB/TrEMBL
  ENSRNOT00000099991 ENTREZGENE
  ENSRNOT00000099991.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.250.3260 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6918772 IMAGE-MGC_LOAD
  IMAGE:7303531 IMAGE-MGC_LOAD
InterPro Ribosomal_L21_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L21e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L21e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:79449 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105377 IMAGE-MGC_LOAD
  MGC:72750 IMAGE-MGC_LOAD
NCBI Gene 79449 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L21 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR20981 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L21e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl21 PhenoGen
PROSITE RIBOSOMAL_L21E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000957 RatGTEx
  ENSRNOG00000029410 RatGTEx
  ENSRNOG00000032803 RatGTEx
  ENSRNOG00000049848 RatGTEx
  ENSRNOG00000066953 RatGTEx
  ENSRNOG00000069969 RatGTEx
Superfamily-SCOP SSF50104 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC203946
UniProt A6K1C0 ENTREZGENE
  A6K1C4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPN7 ENTREZGENE, UniProtKB/TrEMBL
  F7ELM8_RAT UniProtKB/TrEMBL
  P20280 ENTREZGENE
  Q6PDW2 ENTREZGENE, UniProtKB/TrEMBL
  RL21_RAT UniProtKB/Swiss-Prot
UniProt Secondary A6K1C0 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rpl21  ribosomal protein L21      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_other gene may be present in 16-23 copies 68298