Rpl21 (ribosomal protein L21) - Rat Genome Database

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Gene: Rpl21 (ribosomal protein L21) Rattus norvegicus
Analyze
Symbol: Rpl21 (Ensembl: LOC108348870)
Name: ribosomal protein L21 (Ensembl:60S ribosomal protein L21-like)
RGD ID: 68390
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Located in ribosome. Part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in hypotrichosis 12. Orthologous to human RPL21 (ribosomal protein L21); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L21; large ribosomal subunit protein eL21
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rpl21-ps1   Rpl21-ps25  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,382,516 - 13,386,153 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1213,382,516 - 13,386,153 (-)EnsemblGRCr8
GRCr8 Ensembl1326,910,641 - 26,911,251 (-)EnsemblGRCr8
mRatBN7.2128,268,641 - 8,272,278 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1326,396,173 - 26,396,732 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl388,512,435 - 88,512,917 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl128,267,196 - 8,272,281 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx129,070,396 - 9,073,473 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0129,693,575 - 9,696,652 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,717,016 - 8,720,093 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,996,919 - 9,999,998 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX10,430,847 - 10,431,400 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl129,996,951 - 9,998,779 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl391,870,208 - 91,870,690 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1330,799,969 - 30,800,451 (-)Ensemblrn6Rnor6.0
Rnor_5.01212,104,705 - 12,107,784 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4128,716,675 - 8,719,754 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1210,086,177 - 10,089,256 (-)NCBICelera
RGSC_v3.1128,746,602 - 8,749,682 (-)NCBI
Cytogenetic Map12p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzene  (EXP)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorohydrocarbon  (EXP)
chloropicrin  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichlorine  (EXP)
dicrotophos  (ISO)
eugenol  (EXP)
flavonoids  (EXP)
folic acid  (ISO)
furfural  (ISO)
hydrogen peroxide  (ISO)
indometacin  (EXP,ISO)
inulin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
methidathion  (ISO)
methotrexate  (ISO)
methylparaben  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (EXP)
potassium dichromate  (ISO)
Propiverine  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
triptonide  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein L21. Devi KR, etal., Biochem Biophys Res Commun 1989 Jul 14;162(1):364-70.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
11. Identification of neighboring protein pairs in rat liver 60S ribosomal subunits cross-linked with dimethyl suberimidate or dimethyl 3,3'-dithiobispropionimidate. Uchiumi T, etal., J Biochem. 1980 Oct;88(4):1033-44.
Additional References at PubMed
PMID:12477932   PMID:12962325   PMID:16854843   PMID:19946888   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Rpl21
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,382,516 - 13,386,153 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1213,382,516 - 13,386,153 (-)EnsemblGRCr8
GRCr8 Ensembl1326,910,641 - 26,911,251 (-)EnsemblGRCr8
mRatBN7.2128,268,641 - 8,272,278 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1326,396,173 - 26,396,732 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl388,512,435 - 88,512,917 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl128,267,196 - 8,272,281 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx129,070,396 - 9,073,473 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0129,693,575 - 9,696,652 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0128,717,016 - 8,720,093 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,996,919 - 9,999,998 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX10,430,847 - 10,431,400 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl129,996,951 - 9,998,779 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl391,870,208 - 91,870,690 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1330,799,969 - 30,800,451 (-)Ensemblrn6Rnor6.0
Rnor_5.01212,104,705 - 12,107,784 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4128,716,675 - 8,719,754 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1210,086,177 - 10,089,256 (-)NCBICelera
RGSC_v3.1128,746,602 - 8,749,682 (-)NCBI
Cytogenetic Map12p11NCBI
RPL21
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381327,251,558 - 27,256,568 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1327,251,283 - 27,259,609 (+)Ensemblhg38GRCh38
GRCh371327,825,695 - 27,830,705 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361326,723,692 - 26,728,705 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341326,723,705 - 26,728,700NCBI
Celera138,894,559 - 8,899,578 (+)NCBICelera
Cytogenetic Map13q12.2NCBI
HuRef138,647,762 - 8,652,781 (+)NCBIHuRef
CHM1_11327,794,141 - 27,799,154 (+)NCBICHM1_1
T2T-CHM13v2.01326,472,273 - 26,477,291 (+)NCBIT2T-CHM13v2.0
Rpl21
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395146,769,955 - 146,773,842 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5146,769,700 - 146,773,842 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385146,832,890 - 146,837,032 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5146,832,890 - 146,837,032 (+)Ensemblmm10GRCm38
MGSCv375147,644,466 - 147,648,608 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365147,143,494 - 147,147,379 (+)NCBIMGSCv36mm8
Celera5144,819,590 - 144,823,759 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map586.5NCBI
Rpl21
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554976,678,965 - 6,681,419 (+)Ensembl
ChiLan1.0NW_0049554976,676,584 - 6,681,776 (+)NCBIChiLan1.0ChiLan1.0
RPL21
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21426,847,690 - 26,852,933 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11317,956,448 - 17,965,606 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0138,541,343 - 8,546,709 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11326,886,986 - 26,892,281 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1326,886,986 - 26,892,281 (+)EnsemblpanPan2panpan1.1
RPL21
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12512,326,376 - 12,331,398 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2512,326,376 - 12,331,398 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2512,389,740 - 12,394,762 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02512,458,136 - 12,463,158 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2512,458,141 - 12,463,107 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12512,349,127 - 12,354,148 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02512,343,987 - 12,349,005 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02512,388,862 - 12,393,884 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl21
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945173,413,856 - 173,428,685 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647222,523,470 - 22,538,299 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL21
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl114,731,986 - 4,738,489 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1114,731,747 - 4,736,177 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2114,197,563 - 4,201,966 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL21
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.136,445,194 - 6,457,763 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605737,952,260 - 37,957,387 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl21
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477611,262,473 - 11,267,929 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477611,262,214 - 11,267,951 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl21
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1167,603,575 - 7,604,064 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl21
25 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:137
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000001265, ENSRNOT00000040249, ENSRNOT00000046791, ENSRNOT00000047936
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1357337Gluco3Glucose level QTL 30.0004adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)12116966671Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)121186960016966542Rat
61334Gluco17Glucose level QTL 176.3adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)12116966671Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12115486827Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
42 34 170 389 290 286 179 150 179 24 824 413 11 316 168 223 107 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001408995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001408998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001409000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000001265   ⟹   ENSRNOP00000001265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl128,269,265 - 8,272,257 (-)Ensembl
Rnor_6.0 Ensembl129,996,951 - 9,998,779 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000040249   ⟹   ENSRNOP00000051312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl388,512,435 - 88,512,917 (+)Ensembl
Rnor_6.0 Ensembl391,870,208 - 91,870,690 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000046791   ⟹   ENSRNOP00000048808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1326,910,641 - 26,911,251 (-)Ensembl
mRatBN7.2 Ensembl1326,396,173 - 26,396,732 (-)Ensembl
Rnor_6.0 Ensembl1330,799,969 - 30,800,451 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000047936   ⟹   ENSRNOP00000041966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX10,430,847 - 10,431,400 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099991   ⟹   ENSRNOP00000083763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl128,267,196 - 8,272,281 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120816   ⟹   ENSRNOP00000098430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1213,382,516 - 13,386,153 (-)Ensembl
RefSeq Acc Id: NM_001408995   ⟹   NP_001395924
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,382,516 - 13,386,153 (-)NCBI
mRatBN7.2128,268,641 - 8,272,278 (-)NCBI
RefSeq Acc Id: NM_001408996   ⟹   NP_001395925
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,382,516 - 13,386,153 (-)NCBI
mRatBN7.2128,268,641 - 8,272,278 (-)NCBI
RefSeq Acc Id: NM_001408997   ⟹   NP_001395926
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,382,516 - 13,386,153 (-)NCBI
mRatBN7.2128,268,641 - 8,272,278 (-)NCBI
RefSeq Acc Id: NM_001408998   ⟹   NP_001395927
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,382,516 - 13,386,153 (-)NCBI
mRatBN7.2128,268,641 - 8,272,278 (-)NCBI
RefSeq Acc Id: NM_001409000   ⟹   NP_001395929
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,382,516 - 13,386,153 (-)NCBI
mRatBN7.2128,268,641 - 8,272,278 (-)NCBI
RefSeq Acc Id: NM_053330   ⟹   NP_445782
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,382,516 - 13,386,153 (-)NCBI
mRatBN7.2128,268,641 - 8,272,278 (-)NCBI
Rnor_6.0129,996,919 - 9,999,998 (-)NCBI
Rnor_5.01212,104,705 - 12,107,784 (-)NCBI
RGSC_v3.4128,716,675 - 8,719,754 (-)RGD
Celera1210,086,177 - 10,089,256 (-)RGD
Sequence:
RefSeq Acc Id: NP_445782   ⟸   NM_053330
- UniProtKB: P20280 (UniProtKB/Swiss-Prot),   Q6PDW2 (UniProtKB/TrEMBL),   A6K1C0 (UniProtKB/TrEMBL),   A6K1C4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000041966   ⟸   ENSRNOT00000047936
Ensembl Acc Id: ENSRNOP00000048808   ⟸   ENSRNOT00000046791
Ensembl Acc Id: ENSRNOP00000001265   ⟸   ENSRNOT00000001265
Ensembl Acc Id: ENSRNOP00000051312   ⟸   ENSRNOT00000040249
Ensembl Acc Id: ENSRNOP00000083763   ⟸   ENSRNOT00000099991
RefSeq Acc Id: NP_001395924   ⟸   NM_001408995
- UniProtKB: P20280 (UniProtKB/Swiss-Prot),   Q6PDW2 (UniProtKB/TrEMBL),   A6K1C0 (UniProtKB/TrEMBL),   A6K1C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395929   ⟸   NM_001409000
- UniProtKB: P20280 (UniProtKB/Swiss-Prot),   Q6PDW2 (UniProtKB/TrEMBL),   A6K1C0 (UniProtKB/TrEMBL),   A6K1C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395927   ⟸   NM_001408998
- UniProtKB: P20280 (UniProtKB/Swiss-Prot),   Q6PDW2 (UniProtKB/TrEMBL),   A6K1C0 (UniProtKB/TrEMBL),   A6K1C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395925   ⟸   NM_001408996
- UniProtKB: P20280 (UniProtKB/Swiss-Prot),   Q6PDW2 (UniProtKB/TrEMBL),   A6K1C0 (UniProtKB/TrEMBL),   A6K1C4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001395926   ⟸   NM_001408997
- UniProtKB: P20280 (UniProtKB/Swiss-Prot),   Q6PDW2 (UniProtKB/TrEMBL),   A6K1C0 (UniProtKB/TrEMBL),   A6K1C4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000098430   ⟸   ENSRNOT00000120816

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P20280-F1-model_v2 AlphaFold P20280 1-160 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68390 AgrOrtholog
BioCyc Gene G2FUF-20096 BioCyc
Ensembl Genes ENSRNOG00000000957 Ensembl, ENTREZGENE
  ENSRNOG00000029410 Ensembl
  ENSRNOG00000032803 Ensembl
  ENSRNOG00000049848 Ensembl
  ENSRNOG00000069969 Ensembl
Ensembl Transcript ENSRNOT00000120816 ENTREZGENE
Gene3D-CATH 2.30.30.70 UniProtKB/Swiss-Prot
  6.10.250.3260 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6918772 IMAGE-MGC_LOAD
  IMAGE:7303531 IMAGE-MGC_LOAD
InterPro Ribosomal_L21_sf UniProtKB/Swiss-Prot
  Ribosomal_L21e UniProtKB/Swiss-Prot
  Ribosomal_L21e_CS UniProtKB/Swiss-Prot
  Translation_prot_SH3-like_sf UniProtKB/Swiss-Prot
KEGG Report rno:79449 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105377 IMAGE-MGC_LOAD
  MGC:72750 IMAGE-MGC_LOAD
NCBI Gene 79449 ENTREZGENE
PANTHER PTHR20981 UniProtKB/Swiss-Prot
Pfam Ribosomal_L21e UniProtKB/Swiss-Prot
PhenoGen Rpl21 PhenoGen
PROSITE RIBOSOMAL_L21E UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000957 RatGTEx
  ENSRNOG00000029410 RatGTEx
  ENSRNOG00000032803 RatGTEx
  ENSRNOG00000049848 RatGTEx
  ENSRNOG00000069969 RatGTEx
Superfamily-SCOP SSF50104 UniProtKB/Swiss-Prot
TIGR TC203946
UniProt A6K1C0 ENTREZGENE
  A6K1C4 ENTREZGENE, UniProtKB/TrEMBL
  P20280 ENTREZGENE
  Q6PDW2 ENTREZGENE, UniProtKB/TrEMBL
  RL21_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rpl21  ribosomal protein L21      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_other gene may be present in 16-23 copies 68298