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Gene: Cacnb4 (calcium voltage-gated channel auxiliary subunit beta 4) Rattus norvegicus

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Symbol:

Cacnb4

Name:

calcium voltage-gated channel auxiliary subunit beta 4

RGD ID:

68385

Description:

Enables protein kinase binding activity and voltage-gated calcium channel activity. Involved in several processes, including calcium ion transport; negative regulation of G1/S transition of mitotic cell cycle; and positive regulation of protein localization to nucleolus. Located in nuclear speck. Is active in presynapse. Human ortholog(s) of this gene implicated in dilated cardiomyopathy; episodic ataxia; episodic ataxia type 5; and generalized epilepsy. Orthologous to human CACNB4 (calcium voltage-gated channel auxiliary subunit beta 4); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; arrhythmogenic right ventricular cardiomyopathy pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CAB4; calcium channel beta 4 subunit; calcium channel voltage-dependent beta 4 subunit; calcium channel voltage-dependent subunit beta 4; calcium channel, voltage-dependent, beta 4 subunit; voltage-dependent L-type calcium channel subunit beta-4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	57,315,900 - 57,578,271 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	57,315,900 - 57,578,220 (-)	Ensembl				GRCr8
mRatBN7.2	3	36,906,771 - 37,169,165 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	36,910,427 - 37,168,944 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	40,292,289 - 40,542,372 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	48,877,070 - 49,127,150 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	46,661,653 - 46,912,088 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	37,950,846 - 38,211,478 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	37,955,069 - 38,090,526 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	43,050,530 - 43,312,292 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	33,934,478 - 34,072,070 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	35,052,892 - 35,186,998 (-)	NCBI		Celera
RGSC_v3.1	3	33,830,849 - 34,089,967 (-)	NCBI
Cytogenetic Map	3	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ataxia (ISO)

dilated cardiomyopathy (ISO)

epilepsy (ISO)

episodic ataxia (ISO)

episodic ataxia type 5 (ISO)

generalized epilepsy (ISO)

Idiopathic Generalized Epilepsy (ISO)

Idiopathic Generalized Epilepsy 9 (ISO)

juvenile myoclonic epilepsy (ISO)

spastic ataxia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

asbestos (ISO)

atrazine (EXP)

barium(0) (EXP,ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

CGP 52608 (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

Dibutyl phosphate (ISO)

diethyl malate (ISO)

disodium selenite (ISO)

ethanol (ISO)

fenvalerate (EXP)

formaldehyde (ISO)

furan (EXP)

lead(0) (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

methamphetamine (EXP)

methimazole (EXP)

N-methyl-4-phenylpyridinium (EXP)

N-methyl-D-aspartic acid (ISO)

ozone (EXP,ISO)

p-menthan-3-ol (ISO)

paracetamol (ISO)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

Ptaquiloside (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (EXP)

sodium arsenite (ISO)

Soman (EXP)

sotorasib (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

thalidomide (ISO)

titanium dioxide (ISO)

trametinib (ISO)

triphenyl phosphate (ISO)

tris(2-butoxyethyl) phosphate (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

venlafaxine hydrochloride (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult walking behavior (ISO)

calcium ion transmembrane transport (IEA,ISO)

calcium ion transport (IBA,IMP,ISO)

cAMP metabolic process (ISO)

cellular response to leukemia inhibitory factor (ISO)

chemical synaptic transmission (IBA)

detection of light stimulus involved in visual perception (ISO)

gamma-aminobutyric acid secretion (ISO)

gamma-aminobutyric acid signaling pathway (ISO)

muscle cell development (ISO)

negative regulation of cell population proliferation (IDA)

negative regulation of G1/S transition of mitotic cell cycle (IDA)

nervous system process (ISO)

neuromuscular junction development (ISO)

neuronal action potential propagation (ISO)

Peyer's patch development (ISO)

positive regulation of protein localization to nucleolus (IDA)

positive regulation of voltage-gated calcium channel activity (IDA)

regulation of membrane potential (ISO)

regulation of presynaptic cytosolic calcium ion concentration (IEA)

regulation of synaptic vesicle exocytosis (IEA,ISO)

spleen development (ISO)

synaptic transmission, glutamatergic (ISO)

T cell receptor signaling pathway (ISO)

thymus development (ISO)

Cellular Component

glutamatergic synapse (IEA,ISO)

nuclear speck (IDA)

plasma membrane (ISO)

presynapse (IDA,IMP)

synapse (IEA,ISO)

voltage-gated calcium channel complex (IBA,IEA,ISO)

Molecular Function

calcium channel regulator activity (IEA,ISO)

high voltage-gated calcium channel activity (IBA)

protein binding (IPI,ISO)

protein kinase binding (IDA)

voltage-gated calcium channel activity (IEA,IMP,ISO)

voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

arrhythmogenic right ventricular cardiomyopathy pathway (IEA)

calcium transport pathway (ISO)

calcium/calcium-mediated signaling pathway (ISO)

dilated cardiomyopathy pathway (IEA)

hypertrophic cardiomyopathy pathway (IEA)

mitogen activated protein kinase signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Voltage-gated calcium channels.	Catterall WA Cold Spring Harb Perspect Biol. 2011 Aug 1;3(8):a003947. doi: 10.1101/cshperspect.a003947.
2.	Coding and noncoding variation of the human calcium-channel beta4-subunit gene CACNB4 in patients with idiopathic generalized epilepsy and episodic ataxia.	Escayg A, etal., Am J Hum Genet 2000 May;66(5):1531-9. Epub 2000 Apr 4.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Use of a purified and functional recombinant calcium-channel beta4 subunit in surface-plasmon resonance studies.	Geib S, etal., Biochem J 2002 May 15;364(Pt 1):285-92.
5.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
6.	Differential regulated interactions of calcium/calmodulin-dependent protein kinase II with isoforms of voltage-gated calcium channel beta subunits.	Grueter CE, etal., Biochemistry. 2008 Feb 12;47(6):1760-7. Epub 2008 Jan 19.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
9.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
10.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
11.	GOA pipeline	RGD automated data pipeline
12.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
14.	The ß4subunit of the voltage-gated calcium channel (Cacnb4) regulates the rate of cell proliferation in Chinese Hamster Ovary cells.	Rima M, etal., Int J Biochem Cell Biol. 2017 Aug;89:57-70. doi: 10.1016/j.biocel.2017.05.032. Epub 2017 Jun 3.
15.	The neuronal beta 4 subunit increases the unitary conductance of L-type voltage-gated calcium channels in PC12 cells.	Schjott JM, etal., J Biol Chem 2003 Sep 5;278(36):33936-42. Epub 2003 Jun 23.
16.	Cacnb4 directly couples electrical activity to gene expression, a process defective in juvenile epilepsy.	Tadmouri A, etal., EMBO J. 2012 Sep 12;31(18):3730-44. doi: 10.1038/emboj.2012.226. Epub 2012 Aug 14.
17.	Synaptic localization and presynaptic function of calcium channel beta 4-subunits in cultured hippocampal neurons.	Wittemann S, etal., J Biol Chem. 2000 Dec 1;275(48):37807-14. doi: 10.1074/jbc.M004653200.
18.	A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans.	Xu H, etal., J Pers Med. 2018 Feb 26;8(1). pii: jpm8010011. doi: 10.3390/jpm8010011.

Additional References at PubMed

PMID:1321503	PMID:5037658	PMID:7261997	PMID:7472490	PMID:7562514	PMID:7595494	PMID:8388308	PMID:9293489	PMID:9705268	PMID:10322048	PMID:10328888	PMID:10407181
PMID:11880487	PMID:12151514	PMID:12223573	PMID:16525042	PMID:16636205	PMID:17028169	PMID:17320843	PMID:19755851	PMID:19755859	PMID:20439489	PMID:26142343	PMID:30538175

Genomics

Comparative Map Data

Cacnb4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	57,315,900 - 57,578,271 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	57,315,900 - 57,578,220 (-)	Ensembl				GRCr8
mRatBN7.2	3	36,906,771 - 37,169,165 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	36,910,427 - 37,168,944 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	40,292,289 - 40,542,372 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	48,877,070 - 49,127,150 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	46,661,653 - 46,912,088 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	37,950,846 - 38,211,478 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	37,955,069 - 38,090,526 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	43,050,530 - 43,312,292 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	33,934,478 - 34,072,070 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	35,052,892 - 35,186,998 (-)	NCBI		Celera
RGSC_v3.1	3	33,830,849 - 34,089,967 (-)	NCBI
Cytogenetic Map	3	q12	NCBI

CACNB4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	151,832,771 - 152,099,167 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	151,832,771 - 152,099,167 (-)	Ensembl			hg38	GRCh38
GRCh37	2	152,689,285 - 152,955,681 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	152,402,382 - 152,663,790 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	152,519,650 - 152,655,962	NCBI
Celera	2	146,303,966 - 146,570,260 (-)	NCBI		Celera
Cytogenetic Map	2	q23.3	NCBI
HuRef	2	144,575,492 - 144,841,767 (-)	NCBI		HuRef
CHM1_1	2	152,694,863 - 152,961,451 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	152,284,205 - 152,568,400 (-)	NCBI		T2T-CHM13v2.0

Cacnb4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	52,318,332 - 52,566,816 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	52,318,337 - 52,566,843 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	52,428,320 - 52,676,609 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	52,428,320 - 52,676,831 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	52,283,840 - 52,532,101 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	52,250,329 - 52,498,591 (-)	NCBI		MGSCv36	mm8
Celera	2	54,158,343 - 54,407,154 (-)	NCBI		Celera
Cytogenetic Map	2	C1.1	NCBI
cM Map	2	29.98	NCBI

Cacnb4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	17,371,321 - 17,497,616 (-)	Ensembl
ChiLan1.0	NW_004955440	17,364,996 - 17,497,446 (-)	NCBI	ChiLan1.0	ChiLan1.0

CACNB4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	54,515,897 - 54,784,064 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	54,530,877 - 54,798,475 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	39,137,777 - 39,399,007 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	156,373,888 - 156,639,471 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	156,379,469 - 156,639,328 (-)	Ensembl			panPan2	panpan1.1

CACNB4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	52,987,170 - 53,116,410 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	52,993,618 - 53,116,140 (-)	Ensembl			canFam3	CanFam3.1
CanFam3.1 Ensembl	19	52,993,618 - 53,116,140 (-)	NCBI			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	28,450,546 - 28,671,051 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	54,498,188 - 54,718,287 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	54,503,946 - 54,718,498 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	53,213,170 - 53,434,776 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	53,283,518 - 53,505,200 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	54,747,989 - 54,969,199 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cacnb4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	115,871,570 - 116,122,930 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	25,494,883 - 25,740,223 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	25,494,820 - 25,745,783 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CACNB4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	186,434 - 459,856 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	402,801 - 455,691 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Pig Cytomap	3	q14-q21	NCBI

CACNB4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	37,240,749 - 37,518,174 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	37,246,991 - 37,388,059 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	162,034,798 - 162,305,942 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cacnb4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624866	4,973,207 - 5,281,746 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624866	4,973,087 - 5,287,477 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cacnb4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	30,208,570 - 30,454,701 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cacnb4
1419 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	625
Count of miRNA genes:	273
Interacting mature miRNAs:	354
Transcripts:	ENSRNOT00000059430
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	51490129	111359995	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
1354589	Bw31	Body weight QTL 31	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	53651826	98651826	Rat
1298073	Cm13	Cardiac mass QTL 13	2.5		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	45423609	58601291	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	48876619	93876619	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	48876619	93876619	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	35403199	97383526	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	47904172	92904172	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	47904172	70710963	Rat
631647	Bp122	Blood pressure QTL 122	6.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	47904172	70710963	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
1300169	Bp177	Blood pressure QTL 177	2.96		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	3	36425116	81425116	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	48657744	93657744	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	37796919	82796919	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	3	47904172	70710963	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	38708931	67641995	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	38708931	67641995	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	48657744	93657744	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	38708931	67641995	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	50766145	95766145	Rat
61356	Bp37	Blood pressure QTL 37	3		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	51092561	96092561	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	50766145	95766145	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	36721849	110333156	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	38708931	67641995	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	47904172	70710963	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	38708931	67641995	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	67641995	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	38708931	67641995	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	48657744	93657744	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	38708931	83708931	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	48657744	93657744	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	37363734	82363734	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	36101403	81101403	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	48657744	93657744	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	47904172	70710963	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	37796919	59119581	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat

Markers in Region

RH131012

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	36,981,953 - 36,982,166 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	38,025,808 - 38,026,020	NCBI	Rnor6.0
Rnor_5.0	3	43,125,919 - 43,126,131	UniSTS	Rnor5.0
RGSC_v3.4	3	34,005,783 - 34,005,995	UniSTS	RGSC3.4
Celera	3	35,121,566 - 35,121,778	UniSTS
RH 3.4 Map	3	444.8	UniSTS
Cytogenetic Map	3	q12	UniSTS

BF391063

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	36,911,953 - 36,912,114 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	37,956,025 - 37,956,185	NCBI	Rnor6.0
Rnor_5.0	3	43,055,709 - 43,055,869	UniSTS	Rnor5.0
RGSC_v3.4	3	33,935,434 - 33,935,594	UniSTS	RGSC3.4
Celera	3	35,053,848 - 35,054,008	UniSTS
RH 3.4 Map	3	446.1	UniSTS
Cytogenetic Map	3	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	11	64	160	91	90	59	91	59	6	345	187	11	139	81	92	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L02315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000059430 ⟹ ENSRNOP00000056186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	57,315,900 - 57,365,933 (-)	Ensembl
mRatBN7.2 Ensembl	3	36,910,998 - 36,956,813 (-)	Ensembl
Rnor_6.0 Ensembl	3	37,955,069 - 38,090,526 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095267 ⟹ ENSRNOP00000097122

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	57,315,900 - 57,577,932 (-)	Ensembl
mRatBN7.2 Ensembl	3	36,910,998 - 37,168,748 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101829 ⟹ ENSRNOP00000078900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	57,315,900 - 57,456,088 (-)	Ensembl
mRatBN7.2 Ensembl	3	36,910,427 - 37,168,748 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104638 ⟹ ENSRNOP00000089186

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	57,315,900 - 57,456,060 (-)	Ensembl
mRatBN7.2 Ensembl	3	36,910,998 - 37,050,404 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107851 ⟹ ENSRNOP00000097125

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	57,315,900 - 57,578,220 (-)	Ensembl
mRatBN7.2 Ensembl	3	36,910,998 - 37,168,944 (-)	Ensembl

RefSeq Acc Id:

NM_001105733 ⟹ NP_001099203

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	57,315,900 - 57,456,088 (-)	NCBI
mRatBN7.2	3	36,906,774 - 37,046,981 (-)	NCBI
Rnor_6.0	3	37,955,069 - 38,090,535 (-)	NCBI
Rnor_5.0	3	43,050,530 - 43,312,292 (-)	NCBI
RGSC_v3.4	3	33,934,478 - 34,072,070 (-)	RGD
Celera	3	35,052,892 - 35,186,998 (-)	RGD

Sequence:

show sequence

GGTTTTTATGCTCTGTATTGGAGAGGCAGATAAAAATGCCAGGTCTGCATGTCTCTGGGGATAA
CCTCGCCCTGTATGATGTAAATGAATAACATCTTGCCTGATAAAGCCACAGGAACTGATCAGGC
AGCGCAGTTCTTCCAGAGAGGCCTTTTATGTTTTTTATTTTTTATTTTTTATTTTTTTTGAGCT
CTAGCTGTGCTTTCTGCAGCAATTTTGTTTTTCTGCCTTAAAAAGAGGGGCTGTGGATCACCAG
ACCCCCATGTATGACAATTTGTACCTGCATGGAGTTGAAGACTCGGAGGCTGGGTCAGCAGATT
CCTATACAAGCAGGCCATCGGACTCCGATGTCTCTTTGGAAGAGGACCGGGAAGCGATTCGGCA
AGAGAGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAAGTCCAAACCTGTAGCTTTTGCG
GTGAAAACGAATGTGAGCTACTGTGGTGCCCTGGATGAGGATGTGCCCGTTCCCAGCACAGCCA
TCTCCTTTGACGCCAAGGACTTTCTTCACATTAAAGAGAAATATAACAATGATTGGTGGATAGG
AAGGCTGGTGAAGGAGGGCTGTGAGATCGGCTTCATCCCAAGTCCACTGCGTTTGGAGAACATA
CGGATTCAACAGGAACAGAAAAGAGGCCGTTTTCATGGCGGGAAATCGAGTGGAAACTCTTCCT
CCAGTCTGGGAGAAATGGTGTCAGGAACATTTCGAGCAACTCCCACAACAACAGCAAAACAGAA
GCAGAAAGTGACAGAGCACATTCCTCCGTATGATGTTGTGCCATCAATGCGTCCTGTGGTGTTA
GTGGGGCCATCACTGAAAGGTTATGAGGTAACAGACATGATGCAGAAAGCCCTCTTTGATTTCC
TGAAGCACAGGTTTGATGGGAGGATATCAATAACCAGAGTGACAGCTGACATTTCTCTTGCTAA
GAGGTCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGAACGTTCAAACACCAGATCCAGC
CTAGCGGAAGTACAGAGTGAAATTGAAAGAATTTTCGAGTTGGCAAGATCTTTGCAATTGGTTG
TTCTCGATGCAGACACCATCAATCACCCAGCACAGCTGATAAAGACATCGTTAGCGCCCATCAT
CGTCCACGTGAAGGTCTCGTCCCCAAAGGTTTTACAGCGGCTGATTAAGTCCAGAGGAAAGTCC
CAGAGTAAACACTTGAATGTTCAACTGGTGGCAGCTGATAAACTGGCCCAGTGTCCCCCTGAAA
TGTTTGATGTTATATTAGATGAGAATCAACTTGAGGATGCCTGTGAACATCTGGGAGAGTACCT
GGAGGCATATTGGCGTGCCACCCACACAAGCAGTAGCACCCCTATGACCCCATTGCTGGGGAGG
AACGTGGGCTCCACAGCTCTCTCACCGTATCCCACAGCAATCTCTGGACTACAGAGTCAGCGGA
TGAGGCATAGCAACCACTCTACAGAGAATTCTCCAATTGAAAGACGAAGCCTAATGACCTCTGA
TGAAAATTACCACAATGAGAGGGCCCGCAAGAGTAGGAACCGCTTGTCCTCCAGCTCCCAGCAC
AGCCGAGATCACTACCCTCTGGTGGAAGAAGATTATCCTGACTCATACCAGGACACTTACAAAC
CCCATAGGAACCGAGGCTCACCTGGGGGATGCAGCCATGACTCCCGACATAGGCTTTGAGGCTG
CCCAAACAAACAAACAAACAAACAAACATCATCTGTTGACAATTTGCCATAGTACTGCTAAGAT
AAACCAGTCATCTTAATTTGGCAAGCATGGCACAGTATCTGCTGTGCGGGTGGTCTGCTGTCGT
TTGATGTAAGGGGCAAGAATTAAATAGAAGTACATTATGCCCTTGAGTCTAGGAGGGTATTAGA
TACCCGGTCATATAGGTATTTTTAAGTGCTACATTTACATGATAACAGTACCTTTTGTTTTCTT
CATAGATTTTAGACACATCAATTTGTAATTTAGGGTACTGATCAAGGCACATATAAAATAATTT
CCCGTGTAGGAAATTCCAAATGACCAGTTCCAGTTGGAACCAATTTATAAACCAATTCCTGTTG
GAATTTGGGTGAATTGACTGGAAAGTCTACCTGAGCATGTTGAAATCAATTGAAAAAATCAGAG
AAGAAAAAAATACCCAATAAGGAAATCAAAATACTAATAGAAACCAAACCCAGCTATGGTATTT
GTTTGCTGGAAGCTAAATTTACACTTCAAGTTGGAATGTAGAAACATTTTAATAATGTTGCCGG
AATGGCTTTTCAAACTTACCAAATATATTGATAGTGCCAAAAAAAAATCTCAGAAATCTTAATG
CAGAAATTATATAATCGCCTCAGATTTTAATATTTTTATTTTTCCTGATATAGCTGTTGTATTC
AAAGTGTTTTGCCTTCTGTTCAGTCAGTACTGTTAGCCAGTTTGAAGTTGACAAAATCCAGGGG
ATATTTGAGAAGTGGTAAAGAGAAGCCCTAGCATGGACAGTTCCAGAGAGTGGAGAATGAGGTG
TTGTTCCTTCTGCAGTCAGTCTGCACACAGCTGCACACATCTGGAGACCTGGTGTCAGGTAGCA
GAGATGTGGCGGGGCCTCTCTGGCTACAACGGTAATTGGCTTCAGATGGGAAGTCGTCCATCGT
ACAGCACACCGACACGGGCTTAGGAGCTGTGCCAGCATGGCTGAGTGTCTTTCCCTCACTTCAG
CCAGTCTCCATCTTTGAATATAATGAATGTTTTGGCCCTGCATCACACTTCTTTTATGTTTCAT
GGGCATAATCAAATTAGGTACTGAAAGTTATGTTTTCACAAAATAATTAGGAAAACTTAAAACA
CTGAATTAAAATCTTGCAGAGAAAGAAAAAAAAACCCTCATAGAATCAGAATATATTTATTCAC
TAAAAGCAAGACAGTTTCAATACACGGCATTAGAGAGAGTTGAGAGACTGCTCGGTTCCATTGA
TAGTGAACAGCCTTTAGACTTCTATGAGTGTATTTATGGAATTGATGACCTATGTCCTATGTTA
TTAAAGACAGCTTTAATCCAAGAAATTAGTGAAATTGACCCTTTGAAACAAATGTCTTTCTGAA
AGGGCTTGTTTCTGAAATGACGCAATACATGTGTTTTCTAAAGACCCAATTGGAGCTAGACGTA
AAGTCTCTTTCTACTAATGCTTTGAAGTCAATTTCCGAAACAAGTATAATTAATAGTATGTTAA
TTTCTCCAAAAAAAAGACATGGGTCCTCAAAACTGTGTACCAGTTCATTAATTTTCCTGATCAA
GAGTCTAAGTTTCATATTCTTAATCAGTTATCCTATCTCGGATCCCATCAACCCATTGTCTTGA
CTGTATGTGCAACCCATTATGAACCTGCTTATCTGATAATGAGGCTGCCTGAAATTTTGTGGTA
ATCTCAAACATTTGATACATTTAAACACGGGCTCAGTCAAATTGACAAGCTAACATCTGACACT
GGCTTGTGAAGCTTTTTTGTCATCCAGCGAGGCTTACAGAATTTTCTGTTAAGACATTTAACAG
AGCTGTATTCATTGGGCTCTTTAATAAGCATATAATCTTCCATTACCAAATACTTTGTTAGAAG
ACAGAAGAGCATTTTTCCAGCGAACAAACTATATTTATTACATGTATAGCACATATTTGCATGA
GAAAGAAAAACATTAGCCAAACATTTTCCTGTATGCTTTACTGGTTTCTTGTTTGTGCGCATTA
AAGCATTTAATTGC

hide sequence

RefSeq Acc Id:

NM_001399143 ⟹ NP_001386072

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	57,315,900 - 57,578,271 (-)	NCBI
mRatBN7.2	3	36,906,774 - 37,169,165 (-)	NCBI

RefSeq Acc Id:

XM_006234173 ⟹ XP_006234235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	57,315,900 - 57,454,165 (-)	NCBI
mRatBN7.2	3	36,906,771 - 37,056,119 (-)	NCBI
Rnor_6.0	3	37,950,846 - 38,092,383 (-)	NCBI
Rnor_5.0	3	43,050,530 - 43,312,292 (-)	NCBI

Sequence:

show sequence

TTCAGTCCTCAGCTCTGGAAAAAAAAAATAAAAAATGACAACCTGAAGTTGGGGATAGGTGGAA
AGTGTGTCTGGGTAGAGTTTTAGAGGGAAGAGTTGGGGATGAATCATGAAAATACATTATATAC
AATTCCCCCATATTGATAATACTATATTAAAATATAATTGAGCTTAGAATTCCTCTGACCCAGT
CCCCTTGCAGTGTGGGGCTCAAGGGAGTTGGGTGGTCCATGGGCCAGCATCCAGTATCAGCTCA
CGGCTGTCAGAAGATGGAGCTGGTTCAGTATTCCTCTGTGTAGAATCCCTTGAGCATACCTCTT
TTCCAGCCATCCTCTGGGTAGGTACAGACTCAAAGATGATAGCTATCCTGTGTGAGCTGGCCAT
TGAGGAGTCTGGAGGGACCCAGTTTGCCTTGCCACCGTCTAGACTCGAAAGTGATTAGGTATCG
AGATATGCAAAGGTGACTGAAAGCCCTCAGTGGTTGGGCCATCACGGACTGGGAAGAAGGGATG
TGCTGCTCTCAGCTATGGTAGCTCTTGGGTCACTTTGATGACTTGGTTTGTTGCTGTAGACTTA
GGCTTTTCACACTGGCTGGGAGAATGGCCTCCTTTCCCAGGTCTGGGACAGTGACTCCTTGCTG
AGGTCCTGTGATCTACAGCCAATAACTTCTGGCTGACAGAGCACGGTTGTCGCTGGTAAGTGTT
TATGTAGCACTTCTGCAAAGTTCCTTCTCCGAGTGATTTCTTTCCCGGAGTCACAGTGGAAGAA
ATGGAAGCCTGCAGAGGCAGTGCCTGACCGGCCCAGGTCAGCTGTCAAGTTAGTGGCAAAGTTG
ACATGGAGTTTCTGGGTTTATTTCTTACCCCGTGATTCATGCAGCTTCTCGAGATGATGCTATT
CGCCCCTCACCAATTTCTTTCCAGATTTAGCTGGAATCCTTCCTTTTAGAGTGATGAGCTGTAT
GTTTTCTAGGGTCAGGCTGCAACCCATTACTGGTGAGCAGACCAGCCGTAGGGAAGTGAGGGAA
TTCTATCTCAGGTGACCCCCGTTATGGAACTTGTCCTCGTCAGTGTGAGTATGGTGTGAAAGCA
GAGGGTTGGGGTGAGACCTTTCTGTGTGAGCTGTGGGGAAGGATCAGCCGTGTCCTGGATTATT
AAAGACACAGGGAACCGGGTATAAGAAGCAGGGGAAAGATTCTCGCAAAAACTTAGTCTGTTAC
TTAGAGAGGAGTGTTAGACAAATTGAACTAAAAGAACGTTCGGTTTTGCATCTAAAAGTTGAGA
GGTTTTGGCTACCTTTACAGACTCCGCTCATGACACAAGGGTGTTATCTTGCCAGTAAGGCACA
TTGGTGAGAATATTGAGAACTTTTCCTATAGCAATGCCACAGATGTTACCATCTGGTATTTTAT
CTACTTTGCTTCATCTAGATTAAATTTTTCTACCTGACTTGGTGTCCCTTAGCTTATATCGCCT
CTGCAGAGTACAGATGTTGGATGGAGATTGGCATCTGCCTGTGCCTGTGTTTATGAAATATTCA
AAAATAAAAGCCTCTCCTTTGATCCCTTCCTCCAACAGTTCATTTAGCCAAGAGGACGGATGAC
TGTGATTCGAATACCTGATAGCCCTCCTTCCTAAACATTCAAACAGCCCGTCGGGCTACTTGAC
AAGTGTTCGCCGTAGAACTAGCGATGTGCATGAAACAGGAAGCGTCTCCGTGCTGGATAGGATG
CTCAGAGTCACCCTCCACTGTCTCAGGGAACGCTCTTCAGCTGACTGAAGCAGGGAAGCTGAGC
CAATCAGAGGCCGTTTTCCTAGCTCTGTCACCAGTCTGTGCTTGAGGAAGGCTTTTGGTTTTTA
TGCTCTGTATTGGAGAGGCAGATAAAAATGCCAGGTCTGCATGTCTCTGGGGATAACCTCGCCC
TGTATGATGTAAATGAATAACATCTTGCCTGATAAAGCCACAGGAACTGATCAGGCAGCGCAGT
TCTTCCAGAGAGGCCTTTTATGTTTTTTATTTTTTATTTTTTATTTTTTTTGAGCTCTAGCTGT
GCTTTCTGCAGCAATTTTGTTTTTCTGCCTTAAAAAGAGGGGCTGTGGATCACCAGACCCCCAT
GTATGACAATTTGTACCTGCATGGAGTTGAAGACTCGGAGGCTGAAGAATAATGTGATGTGTTA
CCTGAGATGGTGTGAACAGAGCTTCAAGCCAATGGAGAAGACTAGGCCTAAATAGCTGAGCCGG
TGGAGTGCCAGATAAAGCCACACCTGGAGTGCCACATCCCCAGCAGTCTCTCTCAGTGCCAATG
CATTGATGGCTGGGTCAGCAGATTCCTATACAAGCAGGCCATCGGACTCCGATGTCTCTTTGGA
AGAGGACCGGGAAGCGATTCGGCAAGAGAGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCG
AAGTCCAAACCTGTAGCTTTTGCGGTGAAAACGAATGTGAGCTACTGTGGTGCCCTGGATGAGG
ATGTGCCCGTTCCCAGCACAGCCATCTCCTTTGACGCCAAGGACTTTCTTCACATTAAAGAGAA
ATATAACAATGATTGGTGGATAGGAAGGCTGGTGAAGGAGGGCTGTGAGATCGGCTTCATCCCA
AGTCCACTGCGTTTGGAGAACATACGGATTCAACAGGAACAGAAAAGAGGCCGTTTTCATGGCG
GGAAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGGTGTCAGGAACATTTCGAGCAAC
TCCCACAACAACAGCAAAACAGAAGCAGAAAGTGACAGAGCACATTCCTCCGTATGATGTTGTG
CCATCAATGCGTCCTGTGGTGTTAGTGGGGCCATCACTGAAAGGTTATGAGGTAACAGACATGA
TGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAGGATATCAATAACCAGAGT
GACAGCTGACATTTCTCTTGCTAAGAGGTCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATT
GAACGTTCAAACACCAGATCCAGCCTAGCGGAAGTACAGAGTGAAATTGAAAGAATTTTCGAGT
TGGCAAGATCTTTGCAATTGGTTGTTCTCGATGCAGACACCATCAATCACCCAGCACAGCTGAT
AAAGACATCGTTAGCGCCCATCATCGTCCACGTGAAGGTCTCGTCCCCAAAGGTTTTACAGCGG
CTGATTAAGTCCAGAGGAAAGTCCCAGAGTAAACACTTGAATGTTCAACTGGTGGCAGCTGATA
AACTGGCCCAGTGTCCCCCTGAAATGTTTGATGTTATATTAGATGAGAATCAACTTGAGGATGC
CTGTGAACATCTGGGAGAGTACCTGGAGGCATATTGGCGTGCCACCCACACAAGCAGTAGCACC
CCTATGACCCCATTGCTGGGGAGGAACGTGGGCTCCACAGCTCTCTCACCGTATCCCACAGCAA
TCTCTGGACTACAGAGTCAGCGGATGAGGCATAGCAACCACTCTACAGAGAATTCTCCAATTGA
AAGACGAAGCCTAATGACCTCTGATGAAAATTACCACAATGAGAGGGCCCGCAAGAGTAGGAAC
CGCTTGTCCTCCAGCTCCCAGCACAGCCGAGATCACTACCCTCTGGTGGAAGAAGATTATCCTG
ACTCATACCAGGACACTTACAAACCCCATAGGAACCGAGGCTCACCTGGGGGATGCAGCCATGA
CTCCCGACATAGGCTTTGAGGCTGCCCAAACAAACAAACAAACAAACAAACATCATCTGTTGAC
AATTTGCCATAGTACTGCTAAGATAAACCAGTCATCTTAATTTGGCAAGCATGGCACAGTATCT
GCTGTGCGGGTGGTCTGCTGTCGTTTGATGTAAGGGGCAAGAATTAAATAGAAGTACATTATGC
CCTTGAGTCTAGGAGGGTATTAGATACCCGGTCATATAGGTATTTTTAAGTGCTACATTTACAT
GATAACAGTACCTTTTGTTTTCTTCATAGATTTTAGACACATCAATTTGTAATTTAGGGTACTG
ATCAAGGCACATATAAAATAATTTCCCGTGTAGGAAATTCCAAATGACCAGTTCCAGTTGGAAC
CAATTTATAAACCAATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACCTGAGCATGT
TGAAATCAATTGAAAAAATCAGAGAAGAAAAAAATACCCAATAAGGAAATCAAAATACTAATAG
AAACCAAACCCAGCTATGGTATTTGTTTGCTGGAAGCTAAATTTACACTTCAAGTTGGAATGTA
GAAACATTTTAATAATGTTGCCGGAATGGCTTTTCAAACTTACCAAATATATTGATAGTGCCAA
AAAAAAATCTCAGAAATCTTAATGCAGAAATTATATAATCGCCTCAGATTTTAATATTTTTATT
TTTCCTGATATAGCTGTTGTATTCAAAGTGTTTTGCCTTCTGTTCAGTCAGTACTGTTAGCCAG
TTTGAAGTTGACAAAATCCAGGGGATATTTGAGAAGTGGTAAAGAGAAGCCCTAGCATGGACAG
TTCCAGAGAGTGGAGAATGAGGTGTTGTTCCTTCTGCAGTCAGTCTGCACACAGCTGCACACAT
CTGGAGACCTGGTGTCAGGTAGCAGAGATGTGGCGGGGCCTCTCTGGCTACAACGGTAATTGGC
TTCAGATGGGAAGTCGTCCATCGTACAGCACACCGACACGGGCTTAGGAGCTGTGCCAGCATGG
CTGAGTGTCTTTCCCTCACTTCAGCCAGTCTCCATCTTTGAATATAATGAATGTTTTGGCCCTG
CATCACACTTCTTTTATGTTTCATGGGCATAATCAAATTAGGTACTGAAAGTTATGTTTTCACA
AAATAATTAGGAAAACTTAAAACACTGAATTAAAATCTTGCAGAGAAAGAAAAAAAAACCCTCA
TAGAATCAGAATATATTTATTCACTAAAAGCAAGACAGTTTCAATACACGGCATTAGAGAGAGT
TGAGAGACTGCTCGGTTCCATTGATAGTGAACAGCCTTTAGACTTCTATGAGTGTATTTATGGA
ATTGATGACCTATGTCCTATGTTATTAAAGACAGCTTTAATCCAAGAAATTAGTGAAATTGACC
CTTTGAAACAAATGTCTTTCTGAAAGGGCTTGTTTCTGAAATGACGCAATACATGTGTTTTCTA
AAGACCCAATTGGAGCTAGACGTAAAGTCTCTTTCTACTAATGCTTTGAAGTCAATTTCCGAAA
CAAGTATAATTAATAGTATGTTAATTTCTCCAAAAAAAAGACATGGGTCCTCAAAACTGTGTAC
CAGTTCATTAATTTTCCTGATCAAGAGTCTAAGTTTCATATTCTTAATCAGTTATCCTATCTCG
GATCCCATCAACCCATTGTCTTGACTGTATGTGCAACCCATTATGAACCTGCTTATCTGATAAT
GAGGCTGCCTGAAATTTTGTGGTAATCTCAAACATTTGATACATTTAAACACGGGCTCAGTCAA
ATTGACAAGCTAACATCTGACACTGGCTTGTGAAGCTTTTTTGTCATCCAGCGAGGCTTACAGA
ATTTTCTGTTAAGACATTTAACAGAGCTGTATTCATTGGGCTCTTTAATAAGCATATAATCTTC
CATTACCAAATACTTTGTTAGAAGACAGAAGAGCATTTTTCCAGCGAACAAACTATATTTATTA
CATGTATAGCACATATTTGCATGAGAAAGAAAAACATTAGCCAAACATTTTCCTGTATGCTTTA
CTGGTTTCTTGTTTGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATT
TAGAATAGATTGCTGTTGAGCCTTTTCTGCAGTAGCATTAGCAATTTGGTCATTTAACTACTTT
AAGATATTTATATTTTATGGCGCGGGTAGCTGTAACAGCATTTACATATATTTCCTAGTCAACA
AGGCTACCTTTTCTTTCAACTTTGAAGGGTCACTTGTTTTGCAAGCCTCTCCAGCCCTTTTCTC
CCTCACCCCCCGCCCCGCCCCTTTGGCTCTCCATGTCCTGCTGAAAGATGGAGGCCCCATGTGA
TCCGTGCACAAAACTCATCCATCAGTTGCCATCAAAAGTCCATACCTAGTTTGCTTTGCAGTTC
TCTTAAAAAGCTAGCTATGTTGGAAAGGGTAAGATATATATTCTTGATGAATATATTTACTGTT
TCACTTTAATTCTGCATACCTTTCGTCTTCCTCCTATAAGTTTCTCTCCTACAAACGAGGAAGG
GATTAAGATTCCTCCTCTCTTTTTAAAGGCTCAGAGCTGCTTTGTAGAAATGACTAAAATCCAG
ATATACACTAAATAAAACGTTTCACTTTCGCCAAGCATACCAAGAACCTCTAGGGAATGCCTAT
CCCACAAGTACTTTGCTTTAATTCATTTCACTCAAAACGGCAAATGATGAGAAGCAGGAGAAAT
ATTTCTATATCATCTGAGGCTGTTTTCACTTCTAGAGTAGACCATGATAGAAGTCTGTGAGTTT
TCATGGTATATAATAATGCAGACACATGCAACAATGTGGACATGTGGTCCTGGAAAAAAGAGGA
AACGCTACTTGTGGGTCCTTTTGCTTGTTTCCAAGACTACGAGATGACTACAGTATCATAACAA
ACACTGTTACCGTGTTTATGCTAACACTTAAAACAACACATAGTGGTATTTACAAATGACTGTG
ATTCTCTCCCGCCTTTATATGGCTCTACTGGGCAGAAGATTGGAATTGTTAGCAATTAGACTCA
CGGTCTTTCCTAAAGAGTCTCAACTGTGCGACGGTACAAATCATTGCATTTCATCCTCAAGGGA
AGTCTGAAACAAATCAAGACAATTATTTGTTCCACTTTAAATGATCTGTGATTCGCTCCAATTA
TGATTGCTGTTTGCAAAAAAAAATGTATTTTTAGAATGTTAACGTCTTTTCATACCTGCATACT
TGAACTTGTCTTTTGTGTGGGGGCCTTAAACTTCATAGTAGAGAATGGGGGCAGTGAAAAGGGA
AAGGGAAAGAAGGCAAGGAAGCTTCACAAAGGAGAGCGTGCACTCTTCAACTCTTTCAGTGAAC
ATATCCCAAACGTTGAGACACCGCACGTCAGTGAAGAATGTTTCTAGGCAACCTTGATTTGCAA
GCTAGTATATTTTCTTATATAATTTTATTTTGGTATTTGCTAAAAACAAGAAAAAGAAAGAACA
CAACACCACCATACAAATTGCCCTCTACAATGATACGTATACTACCTCTTTTCTAGAGAAAACG
GTCCGTGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTCCCAGCCGGGCTGCAGGGTTG
GAAGTGTTCAGACAAGCCTGCCCTTTAGAGTTCACGCTGTTTTCAAATGCTCCCAGCATGCTCT
CATTTCTTCGACGTCAGCGAGGTTTTCTTGAAATTGGCCCACGGCTTATCATGATGTGAGTTTA
ATTTAACAAGAAGCCATCCTAGGGGACTAAGCAAAGTGAAAGGAACTACCTCTGTGCAAAATGT
AGCCTCTAGCTCAGGTCTAAGGAAGAGAAATCCAGAGACTAGGTGTTTAAAGGCAGAGTTGGTT
GATCCTAGACCTCTAGGGGTACTAAGGGCATGCTATGGCCACTTACTGGGTAAGAGATCTGCGT
TGTCTGGTACGCCCATGTAATTGGAACAAACCTCATATCAACATTTCAAATAAATGATTACATA
ACCCTTATTCCTTTATATTAACCTTCATCTCTCATGACAGCGTTACATTTTTTAATTATATAAA
AGTAATCCTTGGATGGCTGTATGAGTAAAAACTACAGAAGATCATGTAATAAAATCTGCTTCAT
TAGTTCCTCACATCTTTAAATAGTGTCAACACTGTAACTGTTAATTAAGTCACTCACTCCAGCG
GGGTCTACTTTGGCAAACAACAGTCCTTTGCTTTTAAATGACGGTGATGGAACCAGGCAACTTA
AGTGCTCTTGAACGGACATTGAGAATAACTTCTTGTTGAGTTAAGCAATCCAGTTTATCAAAAT
AGTAAAACTGGCTTATGTGGGCAGACAGCTACAGCATTCAGAAGTTACTCTTTACGGTTTCACC
GTTTGTTGAAAGGACCTTTCTCCAACGAAATCATCCTCTGATAGCAATGTCTTTCCTTGTGGAT
AATTTAAGACAAAATGCTGCATGTAGTGATGGTATATTATGGGACAATTAGGAAGTATCTCAGC
AGATAATCTTAATTAAGGGCTGTAACTCCTATTTGCCATAAATACATATAAATAAGAGGAAATA
GTGCTAAGACTTGGGGAGTCTTAACTTTCCATGAACCTTTCTTTTTGGTGGATGTAAGATATTC
ACAGAGAGATGGAAGAAAATGTTACCAATGAATTTATTGTAGTTTAGGGAATTCGCTGATTCTT
CCTAGTTTGAAAATCATAAAGAGTTAAAAAGAGAACCAAGAACAGTAGAAGATCTTTAGCTTTT
CGAGAGTCTTGGGTTATATTTTAAGTATTTAAATCTCCCAACAAATGGCTCGATCTGTATTTAT
GCAGGGGCCTTTCTTGGCCTATTTGCACACTACTTCATACACTTCACTGAAACCAGGATGAATT
CCATACACACAGAGCGCGGGGGGAAATCGGTGAGAATTCTGCTCGCACGGGGTGGGGGTGTCAC
GGGTGCGGGGGAAATTGATATGAATTCCATTCACAAGGGAGTGTCACGGATTCTGGGAAATCGG
TGTGAATTCCGTTTGCATGGGGGGTGTCACACATGCGGGGTCATTAACGCTATATTGTTGCATT
CTATTTTTCATATGCCTTACAATATTTTCTGGAACGTTATTAAAATGAAAGCATTTTATTGCCA
AAATAAATCTATGTTGTTACTTCTGCATTAGCAGTAGAAAAATAATGTAGCAAAAAATATATAT
TGTACAGTACAAAATTATAATATATATATATTTTGCCAATAAATGAAAATAGATTGAGGTGAAA
GAAGCACATTTGTTATAGCACAAACTTACAACAGAACCCACTGTTAAATCTGGCAGACCTGTTT
TTAGATGTACGTAGATTTGGTTTTCTTTCTTATCAGATTTATTTCATCTCTCATATTTGTAATT
GTGCTGCTTGATACTTTCCAGCAATTTATTTCATAGCCTTGCAATCTGTGAGTGTAATTTACTT
ATTTTGTCCCCTTACATAAAGCATATGAACTTCATTTTGTGTTACGACTCATACTCTATTACTG
TGTTTTCTGTTCCCGTTTCTTCTCCCTTGGTAACAGATGGCACAGCAGGTGAGCTCACAGGGCT
CCTCTAGGCTTTGGATGTTTGAAAGTTTATGTTTTTTTTCCCAGCCTCAAGTTAGAGATCAGCA
AAATGTCCCCATGGAAAAATATGAAGTAGGGATTCCATTGCTTTGTACCTGATACTATTTGAAG
CATAAATAAAGCCATTAGCTGTATTTTTAGGAGGTGGGTGGGATTTAAAATCTGATGCTATTAA
TAGGAAACGTACTAAAAATAACTATGGCAAGATGGTAGTAAAAGATCCCCCCTATTCTGAGGGC
TGTTGATATCCCAGGCTATTCCTATGTCTCTGCTGATGTGGTGGGGGGAAATGCCTTTGTCAGA
TAACTTCCTTTTTCCTTTGGGTGTTTATTTTAATAATCTGTCCCTTTCGTTTTTTGTTACATAG
ATATGCGTAGCGTTCTACAAGGCATGCTGGGGCAAATACACTATGCAAATGTACACCGTGCTGC
ATGCTTGGTTCTCCCTCTGCTTTAGCGGCTTAAAAAAAAAAAGAGAAAAACAAAACCGTGGTGT
TATTTTTGTGAACAAAGACATTTAAATTTAACGACAAAAAAAAAAGTGCAGAGTGCATGCATAC
AGTATCCTCATTTCTATGGGTTGTTTTATGGAATTTAAATGTGTACAAAGACTGCATTAATTTT
TTCTTTTATATAATAAATGAAAAAAAAACCACTGAAA

hide sequence

RefSeq Acc Id:

XM_017592000 ⟹ XP_017447489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	57,315,900 - 57,577,912 (-)	NCBI
mRatBN7.2	3	36,906,771 - 37,168,768 (-)	NCBI
Rnor_6.0	3	37,950,846 - 38,210,994 (-)	NCBI

Sequence:

show sequence

CCTCCTCCCCTCCTCCTAGCCTGCTCCCGGGCTCAGCGCTCGGGCTTCAGTGTCCGCAGCCTCC
TGTCGCCGATGCCGGGGACTCAGACCCCGCACCCGCGACGCTTTGTTAATGGATGTGGTGGCCC
GAGGCACCACGACCCGGAGGAGCAGGTTGAAAAGATCCGATGGCAGCACCACTTCCACCAGCTT
CATCCTCAGACAGGGGTCAGCAGATTCCTATACAAGCAGGCCATCGGACTCCGATGTCTCTTTG
GAAGAGGACCGGGAAGCGATTCGGCAAGAGAGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAG
CGAAGTCCAAACCTGTAGCTTTTGCGGTGAAAACGAATGTGAGCTACTGTGGTGCCCTGGATGA
GGATGTGCCCGTTCCCAGCACAGCCATCTCCTTTGACGCCAAGGACTTTCTTCACATTAAAGAG
AAATATAACAATGATTGGTGGATAGGAAGGCTGGTGAAGGAGGGCTGTGAGATCGGCTTCATCC
CAAGTCCACTGCGTTTGGAGAACATACGGATTCAACAGGAACAGAAAAGAGGCCGTTTTCATGG
CGGGAAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGGTGTCAGGAACATTTCGAGCA
ACTCCCACAACAACAGCAAAACAGAAGCAGAAAGTGACAGAGCACATTCCTCCGTATGATGTTG
TGCCATCAATGCGTCCTGTGGTGTTAGTGGGGCCATCACTGAAAGGTTATGAGGTAACAGACAT
GATGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAGGATATCAATAACCAGA
GTGACAGCTGACATTTCTCTTGCTAAGAGGTCTGTCCTCAACAATCCTAGCAAGAGAGCAATAA
TTGAACGTTCAAACACCAGATCCAGCCTAGCGGAAGTACAGAGTGAAATTGAAAGAATTTTCGA
GTTGGCAAGATCTTTGCAATTGGTTGTTCTCGATGCAGACACCATCAATCACCCAGCACAGCTG
ATAAAGACATCGTTAGCGCCCATCATCGTCCACGTGAAGGTCTCGTCCCCAAAGGTTTTACAGC
GGCTGATTAAGTCCAGAGGAAAGTCCCAGAGTAAACACTTGAATGTTCAACTGGTGGCAGCTGA
TAAACTGGCCCAGTGTCCCCCTGAAATGTTTGATGTTATATTAGATGAGAATCAACTTGAGGAT
GCCTGTGAACATCTGGGAGAGTACCTGGAGGCATATTGGCGTGCCACCCACACAAGCAGTAGCA
CCCCTATGACCCCATTGCTGGGGAGGAACGTGGGCTCCACAGCTCTCTCACCGTATCCCACAGC
AATCTCTGGACTACAGAGTCAGCGGATGAGGCATAGCAACCACTCTACAGAGAATTCTCCAATT
GAAAGACGAAGCCTAATGACCTCTGATGAAAATTACCACAATGAGAGGGCCCGCAAGAGTAGGA
ACCGCTTGTCCTCCAGCTCCCAGCACAGCCGAGATCACTACCCTCTGGTGGAAGAAGATTATCC
TGACTCATACCAGGACACTTACAAACCCCATAGGAACCGAGGCTCACCTGGGGGATGCAGCCAT
GACTCCCGACATAGGCTTTGAGGCTGCCCAAACAAACAAACAAACAAACAAACATCATCTGTTG
ACAATTTGCCATAGTACTGCTAAGATAAACCAGTCATCTTAATTTGGCAAGCATGGCACAGTAT
CTGCTGTGCGGGTGGTCTGCTGTCGTTTGATGTAAGGGGCAAGAATTAAATAGAAGTACATTAT
GCCCTTGAGTCTAGGAGGGTATTAGATACCCGGTCATATAGGTATTTTTAAGTGCTACATTTAC
ATGATAACAGTACCTTTTGTTTTCTTCATAGATTTTAGACACATCAATTTGTAATTTAGGGTAC
TGATCAAGGCACATATAAAATAATTTCCCGTGTAGGAAATTCCAAATGACCAGTTCCAGTTGGA
ACCAATTTATAAACCAATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACCTGAGCAT
GTTGAAATCAATTGAAAAAATCAGAGAAGAAAAAAATACCCAATAAGGAAATCAAAATACTAAT
AGAAACCAAACCCAGCTATGGTATTTGTTTGCTGGAAGCTAAATTTACACTTCAAGTTGGAATG
TAGAAACATTTTAATAATGTTGCCGGAATGGCTTTTCAAACTTACCAAATATATTGATAGTGCC
AAAAAAAAATCTCAGAAATCTTAATGCAGAAATTATATAATCGCCTCAGATTTTAATATTTTTA
TTTTTCCTGATATAGCTGTTGTATTCAAAGTGTTTTGCCTTCTGTTCAGTCAGTACTGTTAGCC
AGTTTGAAGTTGACAAAATCCAGGGGATATTTGAGAAGTGGTAAAGAGAAGCCCTAGCATGGAC
AGTTCCAGAGAGTGGAGAATGAGGTGTTGTTCCTTCTGCAGTCAGTCTGCACACAGCTGCACAC
ATCTGGAGACCTGGTGTCAGGTAGCAGAGATGTGGCGGGGCCTCTCTGGCTACAACGGTAATTG
GCTTCAGATGGGAAGTCGTCCATCGTACAGCACACCGACACGGGCTTAGGAGCTGTGCCAGCAT
GGCTGAGTGTCTTTCCCTCACTTCAGCCAGTCTCCATCTTTGAATATAATGAATGTTTTGGCCC
TGCATCACACTTCTTTTATGTTTCATGGGCATAATCAAATTAGGTACTGAAAGTTATGTTTTCA
CAAAATAATTAGGAAAACTTAAAACACTGAATTAAAATCTTGCAGAGAAAGAAAAAAAAACCCT
CATAGAATCAGAATATATTTATTCACTAAAAGCAAGACAGTTTCAATACACGGCATTAGAGAGA
GTTGAGAGACTGCTCGGTTCCATTGATAGTGAACAGCCTTTAGACTTCTATGAGTGTATTTATG
GAATTGATGACCTATGTCCTATGTTATTAAAGACAGCTTTAATCCAAGAAATTAGTGAAATTGA
CCCTTTGAAACAAATGTCTTTCTGAAAGGGCTTGTTTCTGAAATGACGCAATACATGTGTTTTC
TAAAGACCCAATTGGAGCTAGACGTAAAGTCTCTTTCTACTAATGCTTTGAAGTCAATTTCCGA
AACAAGTATAATTAATAGTATGTTAATTTCTCCAAAAAAAAGACATGGGTCCTCAAAACTGTGT
ACCAGTTCATTAATTTTCCTGATCAAGAGTCTAAGTTTCATATTCTTAATCAGTTATCCTATCT
CGGATCCCATCAACCCATTGTCTTGACTGTATGTGCAACCCATTATGAACCTGCTTATCTGATA
ATGAGGCTGCCTGAAATTTTGTGGTAATCTCAAACATTTGATACATTTAAACACGGGCTCAGTC
AAATTGACAAGCTAACATCTGACACTGGCTTGTGAAGCTTTTTTGTCATCCAGCGAGGCTTACA
GAATTTTCTGTTAAGACATTTAACAGAGCTGTATTCATTGGGCTCTTTAATAAGCATATAATCT
TCCATTACCAAATACTTTGTTAGAAGACAGAAGAGCATTTTTCCAGCGAACAAACTATATTTAT
TACATGTATAGCACATATTTGCATGAGAAAGAAAAACATTAGCCAAACATTTTCCTGTATGCTT
TACTGGTTTCTTGTTTGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAA
TTTAGAATAGATTGCTGTTGAGCCTTTTCTGCAGTAGCATTAGCAATTTGGTCATTTAACTACT
TTAAGATATTTATATTTTATGGCGCGGGTAGCTGTAACAGCATTTACATATATTTCCTAGTCAA
CAAGGCTACCTTTTCTTTCAACTTTGAAGGGTCACTTGTTTTGCAAGCCTCTCCAGCCCTTTTC
TCCCTCACCCCCCGCCCCGCCCCTTTGGCTCTCCATGTCCTGCTGAAAGATGGAGGCCCCATGT
GATCCGTGCACAAAACTCATCCATCAGTTGCCATCAAAAGTCCATACCTAGTTTGCTTTGCAGT
TCTCTTAAAAAGCTAGCTATGTTGGAAAGGGTAAGATATATATTCTTGATGAATATATTTACTG
TTTCACTTTAATTCTGCATACCTTTCGTCTTCCTCCTATAAGTTTCTCTCCTACAAACGAGGAA
GGGATTAAGATTCCTCCTCTCTTTTTAAAGGCTCAGAGCTGCTTTGTAGAAATGACTAAAATCC
AGATATACACTAAATAAAACGTTTCACTTTCGCCAAGCATACCAAGAACCTCTAGGGAATGCCT
ATCCCACAAGTACTTTGCTTTAATTCATTTCACTCAAAACGGCAAATGATGAGAAGCAGGAGAA
ATATTTCTATATCATCTGAGGCTGTTTTCACTTCTAGAGTAGACCATGATAGAAGTCTGTGAGT
TTTCATGGTATATAATAATGCAGACACATGCAACAATGTGGACATGTGGTCCTGGAAAAAAGAG
GAAACGCTACTTGTGGGTCCTTTTGCTTGTTTCCAAGACTACGAGATGACTACAGTATCATAAC
AAACACTGTTACCGTGTTTATGCTAACACTTAAAACAACACATAGTGGTATTTACAAATGACTG
TGATTCTCTCCCGCCTTTATATGGCTCTACTGGGCAGAAGATTGGAATTGTTAGCAATTAGACT
CACGGTCTTTCCTAAAGAGTCTCAACTGTGCGACGGTACAAATCATTGCATTTCATCCTCAAGG
GAAGTCTGAAACAAATCAAGACAATTATTTGTTCCACTTTAAATGATCTGTGATTCGCTCCAAT
TATGATTGCTGTTTGCAAAAAAAAATGTATTTTTAGAATGTTAACGTCTTTTCATACCTGCATA
CTTGAACTTGTCTTTTGTGTGGGGGCCTTAAACTTCATAGTAGAGAATGGGGGCAGTGAAAAGG
GAAAGGGAAAGAAGGCAAGGAAGCTTCACAAAGGAGAGCGTGCACTCTTCAACTCTTTCAGTGA
ACATATCCCAAACGTTGAGACACCGCACGTCAGTGAAGAATGTTTCTAGGCAACCTTGATTTGC
AAGCTAGTATATTTTCTTATATAATTTTATTTTGGTATTTGCTAAAAACAAGAAAAAGAAAGAA
CACAACACCACCATACAAATTGCCCTCTACAATGATACGTATACTACCTCTTTTCTAGAGAAAA
CGGTCCGTGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTCCCAGCCGGGCTGCAGGGT
TGGAAGTGTTCAGACAAGCCTGCCCTTTAGAGTTCACGCTGTTTTCAAATGCTCCCAGCATGCT
CTCATTTCTTCGACGTCAGCGAGGTTTTCTTGAAATTGGCCCACGGCTTATCATGATGTGAGTT
TAATTTAACAAGAAGCCATCCTAGGGGACTAAGCAAAGTGAAAGGAACTACCTCTGTGCAAAAT
GTAGCCTCTAGCTCAGGTCTAAGGAAGAGAAATCCAGAGACTAGGTGTTTAAAGGCAGAGTTGG
TTGATCCTAGACCTCTAGGGGTACTAAGGGCATGCTATGGCCACTTACTGGGTAAGAGATCTGC
GTTGTCTGGTACGCCCATGTAATTGGAACAAACCTCATATCAACATTTCAAATAAATGATTACA
TAACCCTTATTCCTTTATATTAACCTTCATCTCTCATGACAGCGTTACATTTTTTAATTATATA
AAAGTAATCCTTGGATGGCTGTATGAGTAAAAACTACAGAAGATCATGTAATAAAATCTGCTTC
ATTAGTTCCTCACATCTTTAAATAGTGTCAACACTGTAACTGTTAATTAAGTCACTCACTCCAG
CGGGGTCTACTTTGGCAAACAACAGTCCTTTGCTTTTAAATGACGGTGATGGAACCAGGCAACT
TAAGTGCTCTTGAACGGACATTGAGAATAACTTCTTGTTGAGTTAAGCAATCCAGTTTATCAAA
ATAGTAAAACTGGCTTATGTGGGCAGACAGCTACAGCATTCAGAAGTTACTCTTTACGGTTTCA
CCGTTTGTTGAAAGGACCTTTCTCCAACGAAATCATCCTCTGATAGCAATGTCTTTCCTTGTGG
ATAATTTAAGACAAAATGCTGCATGTAGTGATGGTATATTATGGGACAATTAGGAAGTATCTCA
GCAGATAATCTTAATTAAGGGCTGTAACTCCTATTTGCCATAAATACATATAAATAAGAGGAAA
TAGTGCTAAGACTTGGGGAGTCTTAACTTTCCATGAACCTTTCTTTTTGGTGGATGTAAGATAT
TCACAGAGAGATGGAAGAAAATGTTACCAATGAATTTATTGTAGTTTAGGGAATTCGCTGATTC
TTCCTAGTTTGAAAATCATAAAGAGTTAAAAAGAGAACCAAGAACAGTAGAAGATCTTTAGCTT
TTCGAGAGTCTTGGGTTATATTTTAAGTATTTAAATCTCCCAACAAATGGCTCGATCTGTATTT
ATGCAGGGGCCTTTCTTGGCCTATTTGCACACTACTTCATACACTTCACTGAAACCAGGATGAA
TTCCATACACACAGAGCGCGGGGGGAAATCGGTGAGAATTCTGCTCGCACGGGGTGGGGGTGTC
ACGGGTGCGGGGGAAATTGATATGAATTCCATTCACAAGGGAGTGTCACGGATTCTGGGAAATC
GGTGTGAATTCCGTTTGCATGGGGGGTGTCACACATGCGGGGTCATTAACGCTATATTGTTGCA
TTCTATTTTTCATATGCCTTACAATATTTTCTGGAACGTTATTAAAATGAAAGCATTTTATTGC
CAAAATAAATCTATGTTGTTACTTCTGCATTAGCAGTAGAAAAATAATGTAGCAAAAAATATAT
ATTGTACAGTACAAAATTATAATATATATATATTTTGCCAATAAATGAAAATAGATTGAGGTGA
AAGAAGCACATTTGTTATAGCACAAACTTACAACAGAACCCACTGTTAAATCTGGCAGACCTGT
TTTTAGATGTACGTAGATTTGGTTTTCTTTCTTATCAGATTTATTTCATCTCTCATATTTGTAA
TTGTGCTGCTTGATACTTTCCAGCAATTTATTTCATAGCCTTGCAATCTGTGAGTGTAATTTAC
TTATTTTGTCCCCTTACATAAAGCATATGAACTTCATTTTGTGTTACGACTCATACTCTATTAC
TGTGTTTTCTGTTCCCGTTTCTTCTCCCTTGGTAACAGATGGCACAGCAGGTGAGCTCACAGGG
CTCCTCTAGGCTTTGGATGTTTGAAAGTTTATGTTTTTTTTCCCAGCCTCAAGTTAGAGATCAG
CAAAATGTCCCCATGGAAAAATATGAAGTAGGGATTCCATTGCTTTGTACCTGATACTATTTGA
AGCATAAATAAAGCCATTAGCTGTATTTTTAGGAGGTGGGTGGGATTTAAAATCTGATGCTATT
AATAGGAAACGTACTAAAAATAACTATGGCAAGATGGTAGTAAAAGATCCCCCCTATTCTGAGG
GCTGTTGATATCCCAGGCTATTCCTATGTCTCTGCTGATGTGGTGGGGGGAAATGCCTTTGTCA
GATAACTTCCTTTTTCCTTTGGGTGTTTATTTTAATAATCTGTCCCTTTCGTTTTTTGTTACAT
AGATATGCGTAGCGTTCTACAAGGCATGCTGGGGCAAATACACTATGCAAATGTACACCGTGCT
GCATGCTTGGTTCTCCCTCTGCTTTAGCGGCTTAAAAAAAAAAAGAGAAAAACAAAACCGTGGT
GTTATTTTTGTGAACAAAGACATTTAAATTTAACGACAAAAAAAAAAGTGCAGAGTGCATGCAT
ACAGTATCCTCATTTCTATGGGTTGTTTTATGGAATTTAAATGTGTACAAAGACTGCATTAATT
TTTTCTTTTATATAATAAATGAAAAAAAAACCACTGAAA

hide sequence

RefSeq Acc Id:

XM_039105754 ⟹ XP_038961682

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	57,315,900 - 57,362,763 (-)	NCBI
mRatBN7.2	3	36,906,771 - 36,953,642 (-)	NCBI

RefSeq Acc Id:

XM_063284430 ⟹ XP_063140500

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	57,315,900 - 57,362,720 (-)	NCBI

RefSeq Acc Id:

XM_063284431 ⟹ XP_063140501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	57,315,900 - 57,353,629 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099203	(Get FASTA)	NCBI Sequence Viewer
	NP_001386072	(Get FASTA)	NCBI Sequence Viewer
	XP_006234235	(Get FASTA)	NCBI Sequence Viewer
	XP_017447489	(Get FASTA)	NCBI Sequence Viewer
	XP_038961682	(Get FASTA)	NCBI Sequence Viewer
	XP_063140500	(Get FASTA)	NCBI Sequence Viewer
	XP_063140501	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D4A055	(Get FASTA)	NCBI Sequence Viewer
	EDM00432	(Get FASTA)	NCBI Sequence Viewer
	EDM00433	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000078900
	ENSRNOP00000089186
	ENSRNOP00000097122
	ENSRNOP00000097125
	ENSRNOP00000097125.1

RefSeq Acc Id:	NP_001099203 ⟸ NM_001105733
- Peptide Label:	isoform 2
- UniProtKB:	A0A8L2QRB5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYDNLYLHGVEDSEAGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVK TNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRI QQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTTTAKQKQKVTEHIPPYDVVPSMRPVVLVG PSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLA EVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQS KHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTSSSTPMTPLLGRNV GSTALSPYPTAISGLQSQRMRHSNHSTENSPIERRSLMTSDENYHNERARKSRNRLSSSSQHSR DHYPLVEEDYPDSYQDTYKPHRNRGSPGGCSHDSRHRL hide sequence

RefSeq Acc Id:	XP_006234235 ⟸ XM_006234173
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A7M3 (UniProtKB/TrEMBL), A0A8L2QRB5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDV PVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGK SSGNSSSSLGEMVSGTFRATPTTTAKQKQKVTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQ KALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELA RSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKL AQCPPEMFDVILDENQLEDACEHLGEYLEAYWRATHTSSSTPMTPLLGRNVGSTALSPYPTAIS GLQSQRMRHSNHSTENSPIERRSLMTSDENYHNERARKSRNRLSSSSQHSRDHYPLVEEDYPDS YQDTYKPHRNRGSPGGCSHDSRHRL hide sequence

RefSeq Acc Id:	XP_017447489 ⟸ XM_017592000
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ARA9 (UniProtKB/TrEMBL), A0A8L2QRB5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVVARGTTTRRSRLKRSDGSTTSTSFILRQGSADSYTSRPSDSDVSLEEDREAIRQEREQQAA IQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTAISFDAKDFLHIKEKYNNDWWIGRLVKEGC EIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEMVSGTFRATPTTTAKQKQKVTEHI PPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNP SKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSLAPIIVHVKVSS PKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEAYWRAT HTSSSTPMTPLLGRNVGSTALSPYPTAISGLQSQRMRHSNHSTENSPIERRSLMTSDENYHNER ARKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGCSHDSRHRL hide sequence

Ensembl Acc Id:

ENSRNOP00000056186 ⟸ ENSRNOT00000059430

RefSeq Acc Id:	XP_038961682 ⟸ XM_039105754
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000078900 ⟸ ENSRNOT00000101829

Ensembl Acc Id:

ENSRNOP00000097125 ⟸ ENSRNOT00000107851

Ensembl Acc Id:

ENSRNOP00000089186 ⟸ ENSRNOT00000104638

Ensembl Acc Id:

ENSRNOP00000097122 ⟸ ENSRNOT00000095267

RefSeq Acc Id:	NP_001386072 ⟸ NM_001399143
- Peptide Label:	isoform 1
- UniProtKB:	D4A055 (UniProtKB/Swiss-Prot), A6JF27 (UniProtKB/TrEMBL), A0A8L2QRB5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140500 ⟸ XM_063284430
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063140501 ⟸ XM_063284431
- Peptide Label:	isoform X4

Protein Domains

SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A055-F1-model_v2	AlphaFold	D4A055	1-519	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:68385	AgrOrtholog
BioCyc Gene	G2FUF-49727	BioCyc
Ensembl Genes	ENSRNOG00000007666	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000095267	ENTREZGENE
	ENSRNOT00000101829	ENTREZGENE
	ENSRNOT00000104638	ENTREZGENE
	ENSRNOT00000107851	ENTREZGENE
	ENSRNOT00000107851.1	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot
	SH3 Domains	UniProtKB/Swiss-Prot
InterPro	CAB1-4_N_A-dom	UniProtKB/Swiss-Prot
	GK/Ca_channel_bsu	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	SH3-like_dom_sf	UniProtKB/Swiss-Prot
	SH3_domain	UniProtKB/Swiss-Prot
	VDCC_L_bsu	UniProtKB/Swiss-Prot
KEGG Report	rno:58942	UniProtKB/Swiss-Prot
NCBI Gene	58942	ENTREZGENE
PANTHER	VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT	UniProtKB/Swiss-Prot
Pfam	Guanylate_kin	UniProtKB/Swiss-Prot
	VGCC_beta4Aa_N	UniProtKB/Swiss-Prot
PhenoGen	Cacnb4	PhenoGen
PRINTS	LCACHANNELB	UniProtKB/Swiss-Prot
PROSITE	SH3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000007666	RatGTEx
SMART	GuKc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50044	UniProtKB/Swiss-Prot
	SSF52540	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZLY8_RAT	UniProtKB/TrEMBL
	A0A8I6A7M3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ARA9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QRB5	ENTREZGENE, UniProtKB/TrEMBL
	A6JF27	ENTREZGENE, UniProtKB/TrEMBL
	CACB4_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-11	Cacnb4	calcium voltage-gated channel auxiliary subunit beta 4	Cacnb4	calcium channel, voltage-dependent, beta 4 subunit	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Cacnb4	calcium channel beta 4 subunit			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)