Clip1 (CAP-GLY domain containing linker protein 1) - Rat Genome Database

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Gene: Clip1 (CAP-GLY domain containing linker protein 1) Rattus norvegicus
Analyze
Symbol: Clip1
Name: CAP-GLY domain containing linker protein 1
RGD ID: 67404
Description: Enables microtubule plus-end binding activity. Involved in positive regulation of dendrite development. Located in cytoplasmic microtubule and microtubule plus-end. Orthologous to human CLIP1 (CAP-Gly domain containing linker protein 1); PARTICIPATES IN mTOR signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CAP-Gly domain-containing linker protein 1; CLIP-170; cytoplasmic linker protein 170; MGC114234; restin; restin (Reed-Steinberg cell-espressed intermediate filament-associated protein); Restin (Reed-Steinberg cell-expressed intermediate filament-associated protein); Rsn
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,571,533 - 38,678,779 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1238,571,834 - 38,678,779 (+)EnsemblGRCr8
mRatBN7.21232,910,932 - 33,017,891 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1234,089,446 - 34,195,369 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,700,796 - 34,806,723 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,752,676 - 33,858,611 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,345,203 - 38,452,650 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,345,456 - 38,452,652 (+)Ensemblrn6Rnor6.0
Rnor_5.01240,226,364 - 40,333,749 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41234,049,773 - 34,155,531 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1234,596,440 - 34,702,275 (+)NCBICelera
RGSC_v3.11233,913,160 - 34,018,914 (+)NCBI
Cytogenetic Map12q16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bilirubin IXalpha  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
cannabidiol  (ISO)
chloroprene  (EXP,ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
clorgyline  (ISO)
cobalt dichloride  (EXP)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
fenthion  (ISO)
finasteride  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furfural  (ISO)
gallic acid  (ISO)
geldanamycin  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
menadione  (ISO)
methamphetamine  (EXP,ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
ozone  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetrahydropalmatine  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Clasps are CLIP-115 and -170 associating proteins involved in the regional regulation of microtubule dynamics in motile fibroblasts. Akhmanova A, etal., Cell 2001 Mar 23;104(6):923-35.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Phosphorylation of CLIP-170 by Plk1 and CK2 promotes timely formation of kinetochore-microtubule attachments. Li H, etal., EMBO J. 2010 Sep 1;29(17):2953-65. doi: 10.1038/emboj.2010.174. Epub 2010 Jul 27.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. alpha-Tubulin Tyrosination and CLIP-170 Phosphorylation Regulate the Initiation of Dynein-Driven Transport in Neurons. Nirschl JJ, etal., Cell Rep. 2016 Mar 22;14(11):2637-52. doi: 10.1016/j.celrep.2016.02.046. Epub 2016 Mar 10.
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. CLIP-170 and IQGAP1 cooperatively regulate dendrite morphology. Swiech L, etal., J Neurosci. 2011 Mar 23;31(12):4555-68. doi: 10.1523/JNEUROSCI.6582-10.2011.
13. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:12433698   PMID:12477932   PMID:15262990   PMID:16148041   PMID:16247022   PMID:16954346   PMID:17828275   PMID:17828277   PMID:17889670   PMID:18511518   PMID:18854161   PMID:19004523  
PMID:19687009   PMID:21273437   PMID:21399614   PMID:26506308  


Genomics

Comparative Map Data
Clip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81238,571,533 - 38,678,779 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1238,571,834 - 38,678,779 (+)EnsemblGRCr8
mRatBN7.21232,910,932 - 33,017,891 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1234,089,446 - 34,195,369 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,700,796 - 34,806,723 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01233,752,676 - 33,858,611 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,345,203 - 38,452,650 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,345,456 - 38,452,652 (+)Ensemblrn6Rnor6.0
Rnor_5.01240,226,364 - 40,333,749 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41234,049,773 - 34,155,531 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1234,596,440 - 34,702,275 (+)NCBICelera
RGSC_v3.11233,913,160 - 34,018,914 (+)NCBI
Cytogenetic Map12q16NCBI
CLIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812122,271,469 - 122,422,956 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12122,271,432 - 122,422,778 (-)Ensemblhg38GRCh38
GRCh3712122,756,016 - 122,907,216 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,321,934 - 121,473,069 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3412121,280,860 - 121,431,996NCBI
Celera12122,346,248 - 122,498,975 (-)NCBICelera
Cytogenetic Map12q24.31NCBI
HuRef12119,716,905 - 119,868,164 (-)NCBIHuRef
CHM1_112122,724,274 - 122,875,405 (-)NCBICHM1_1
T2T-CHM13v2.012122,267,259 - 122,418,870 (-)NCBIT2T-CHM13v2.0
Clip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395123,715,857 - 123,822,527 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5123,715,858 - 123,822,681 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385123,577,794 - 123,684,606 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5123,577,795 - 123,684,618 (-)Ensemblmm10GRCm38
MGSCv375124,029,079 - 124,134,300 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365123,839,688 - 123,944,915 (-)NCBIMGSCv36mm8
Celera5120,653,293 - 120,732,591 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map563.06NCBI
Clip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554826,244,752 - 6,330,978 (+)Ensembl
ChiLan1.0NW_0049554826,213,363 - 6,330,601 (+)NCBIChiLan1.0ChiLan1.0
CLIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210130,362,430 - 130,513,834 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112130,358,805 - 130,509,914 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012119,873,105 - 120,024,222 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112123,241,049 - 123,392,069 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12123,242,489 - 123,348,540 (-)EnsemblpanPan2panpan1.1
CLIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,979,685 - 7,087,914 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,996,340 - 7,087,731 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha267,123,914 - 7,248,095 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0267,215,194 - 7,339,394 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl267,215,176 - 7,339,393 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1267,145,842 - 7,271,532 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0267,238,425 - 7,362,525 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0267,193,979 - 7,318,170 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Clip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,254,519 - 157,369,858 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365582,137,392 - 2,224,878 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365582,109,569 - 2,224,907 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1430,320,958 - 30,467,657 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11430,320,870 - 30,467,095 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21432,126,533 - 32,195,050 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111117,621,047 - 117,775,717 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11117,620,949 - 117,729,506 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037127,581,928 - 127,709,244 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474722,481,196 - 22,598,038 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474722,481,304 - 22,596,779 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Clip1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11630,207,330 - 30,284,828 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Clip1
743 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:53
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000001685
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
8693635Alc28Alcohol consumption QTL 282.70.439drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771850386405Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123776414551558799Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122977552242298555Rat
1600386Calcic2Intracellular calcium level QTL 20.001platelet physiology trait (VT:0005464)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121746497946784661Rat
1556747Calcic1Intracellular calcium level QTL 13.6platelet calcium amount (VT:0010500)platelet intracellular calcium level (CMO:0000922)123370043246784661Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123370043251558799Rat
631829Alc6Alcohol consumption QTL 64.7consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)123424347543352593Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
8693658Alc33Alcohol consumption QTL 332.10.68drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)122871771849212240Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat

Markers in Region
D12Rat30  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81238,634,928 - 38,635,130 (+)Marker Load Pipeline
mRatBN7.21232,974,036 - 32,974,238 (+)MAPPERmRatBN7.2
Rnor_6.01238,408,800 - 38,409,001NCBIRnor6.0
Rnor_5.01240,289,899 - 40,290,100UniSTSRnor5.0
RGSC_v3.41234,112,682 - 34,112,883UniSTSRGSC3.4
RGSC_v3.41234,112,589 - 34,112,949RGDRGSC3.4
Celera1234,659,399 - 34,659,602UniSTS
RGSC_v3.11233,976,070 - 33,976,271RGD
RH 3.4 Map12585.8UniSTS
RH 3.4 Map12585.8RGD
SHRSP x BN Map1242.1099RGD
SHRSP x BN Map1242.1099UniSTS
Cytogenetic Map12q15UniSTS
RH118296  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21232,935,231 - 32,935,427 (+)MAPPERmRatBN7.2
Rnor_6.01238,369,986 - 38,370,181NCBIRnor6.0
Rnor_5.01240,251,109 - 40,251,304UniSTSRnor5.0
RGSC_v3.41234,073,686 - 34,073,881UniSTSRGSC3.4
Celera1234,620,608 - 34,620,803UniSTS
Cytogenetic Map12q15UniSTS
RH133849  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21233,016,648 - 33,016,854 (+)MAPPERmRatBN7.2
Rnor_6.01238,451,408 - 38,451,613NCBIRnor6.0
Rnor_5.01240,332,507 - 40,332,712UniSTSRnor5.0
RGSC_v3.41234,155,273 - 34,155,478UniSTSRGSC3.4
Celera1234,702,017 - 34,702,222UniSTS
RH 3.4 Map12593.8UniSTS
Cytogenetic Map12q15UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001408966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039089738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ237670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY829000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC097264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M99613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000001685   ⟹   ENSRNOP00000001685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1238,594,798 - 38,677,559 (+)Ensembl
mRatBN7.2 Ensembl1232,910,991 - 33,016,902 (+)Ensembl
Rnor_6.0 Ensembl1238,345,456 - 38,451,661 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000078530   ⟹   ENSRNOP00000072766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1238,571,843 - 38,678,777 (+)Ensembl
mRatBN7.2 Ensembl1232,910,991 - 33,016,902 (+)Ensembl
Rnor_6.0 Ensembl1238,375,416 - 38,451,226 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083261   ⟹   ENSRNOP00000068884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1238,594,822 - 38,612,782 (+)Ensembl
mRatBN7.2 Ensembl1232,933,939 - 32,951,906 (+)Ensembl
Rnor_6.0 Ensembl1238,368,693 - 38,386,653 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088002   ⟹   ENSRNOP00000073711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1238,604,622 - 38,678,774 (+)Ensembl
mRatBN7.2 Ensembl1232,943,745 - 33,017,884 (+)Ensembl
Rnor_6.0 Ensembl1238,377,034 - 38,452,652 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096011   ⟹   ENSRNOP00000090148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1238,571,834 - 38,678,779 (+)Ensembl
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098458   ⟹   ENSRNOP00000093783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1238,571,843 - 38,678,777 (+)Ensembl
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102474   ⟹   ENSRNOP00000079550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1238,571,834 - 38,678,779 (+)Ensembl
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105301   ⟹   ENSRNOP00000092485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1238,590,547 - 38,678,777 (+)Ensembl
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105680   ⟹   ENSRNOP00000093663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1238,571,834 - 38,678,779 (+)Ensembl
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110644   ⟹   ENSRNOP00000087368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1238,590,557 - 38,678,774 (+)Ensembl
mRatBN7.2 Ensembl1232,910,977 - 33,017,884 (+)Ensembl
RefSeq Acc Id: NM_001408966   ⟹   NP_001395895
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,834 - 38,678,779 (+)NCBI
mRatBN7.21232,910,949 - 33,017,891 (+)NCBI
RefSeq Acc Id: NM_031745   ⟹   NP_113933
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,834 - 38,678,779 (+)NCBI
mRatBN7.21232,910,949 - 33,017,891 (+)NCBI
Rnor_6.01238,345,456 - 38,451,666 (+)NCBI
Rnor_5.01240,226,364 - 40,333,749 (+)NCBI
RGSC_v3.41234,049,773 - 34,155,531 (+)RGD
Celera1234,596,440 - 34,702,275 (+)RGD
Sequence:
RefSeq Acc Id: XM_008769251   ⟹   XP_008767473
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769257   ⟹   XP_008767479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769258   ⟹   XP_008767480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769259   ⟹   XP_008767481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
Rnor_6.01238,345,203 - 38,452,650 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089733   ⟹   XP_038945661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_039089738   ⟹   XP_038945666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
mRatBN7.21232,910,932 - 33,017,891 (+)NCBI
RefSeq Acc Id: XM_063271618   ⟹   XP_063127688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,584,813 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271619   ⟹   XP_063127689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,759 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271620   ⟹   XP_063127690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,533 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271621   ⟹   XP_063127691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,759 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271622   ⟹   XP_063127692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271623   ⟹   XP_063127693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,584,813 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271624   ⟹   XP_063127694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,759 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271625   ⟹   XP_063127695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271626   ⟹   XP_063127696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,759 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271627   ⟹   XP_063127697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271628   ⟹   XP_063127698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,759 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271629   ⟹   XP_063127699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,759 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271630   ⟹   XP_063127700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,594,792 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271631   ⟹   XP_063127701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271632   ⟹   XP_063127702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271633   ⟹   XP_063127703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271634   ⟹   XP_063127704
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271635   ⟹   XP_063127705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,672,756 (+)NCBI
RefSeq Acc Id: XM_063271636   ⟹   XP_063127706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,584,813 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271637   ⟹   XP_063127707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271638   ⟹   XP_063127708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,584,813 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271639   ⟹   XP_063127709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271640   ⟹   XP_063127710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,584,813 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271641   ⟹   XP_063127711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,627,379 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271642   ⟹   XP_063127712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271643   ⟹   XP_063127713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271644   ⟹   XP_063127714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,571,810 - 38,678,779 (+)NCBI
RefSeq Acc Id: XM_063271645   ⟹   XP_063127715
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81238,636,303 - 38,678,779 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001395895 (Get FASTA)   NCBI Sequence Viewer  
  NP_113933 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767473 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767479 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767480 (Get FASTA)   NCBI Sequence Viewer  
  XP_008767481 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945661 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945666 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127688 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127689 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127690 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127691 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127692 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127693 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127694 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127695 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127696 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127697 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127698 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127699 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127700 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127701 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127702 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127703 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127704 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127705 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127706 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127707 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127708 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127709 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127710 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127711 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127712 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127713 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127714 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127715 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH97264 (Get FASTA)   NCBI Sequence Viewer  
  AAW69309 (Get FASTA)   NCBI Sequence Viewer  
  CAB92974 (Get FASTA)   NCBI Sequence Viewer  
  EDM13627 (Get FASTA)   NCBI Sequence Viewer  
  EDM13628 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000001685
  ENSRNOP00000001685.8
  ENSRNOP00000072766
  ENSRNOP00000073711
  ENSRNOP00000079550
  ENSRNOP00000087368
  ENSRNOP00000090148
  ENSRNOP00000092485
  ENSRNOP00000093663
  ENSRNOP00000093783
GenBank Protein Q9JK25 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_113933   ⟸   NM_031745
- Peptide Label: isoform 1
- UniProtKB: A0A0G2K3T3 (UniProtKB/Swiss-Prot),   Q9JK25 (UniProtKB/TrEMBL),   F1MAH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767473   ⟸   XM_008769251
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767479   ⟸   XM_008769257
- Peptide Label: isoform X14
- UniProtKB: A0A8I6A7M2 (UniProtKB/TrEMBL),   A0A0G2K681 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767480   ⟸   XM_008769258
- Peptide Label: isoform X15
- UniProtKB: A0A8I6AJJ0 (UniProtKB/TrEMBL),   A0A0G2K681 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767481   ⟸   XM_008769259
- Peptide Label: isoform X18
- UniProtKB: A0A0G2K681 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072766   ⟸   ENSRNOT00000078530
Ensembl Acc Id: ENSRNOP00000068884   ⟸   ENSRNOT00000083261
Ensembl Acc Id: ENSRNOP00000001685   ⟸   ENSRNOT00000001685
Ensembl Acc Id: ENSRNOP00000073711   ⟸   ENSRNOT00000088002
RefSeq Acc Id: XP_038945661   ⟸   XM_039089733
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945666   ⟸   XM_039089738
- Peptide Label: isoform X21
- UniProtKB: F1MAH8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090148   ⟸   ENSRNOT00000096011
Ensembl Acc Id: ENSRNOP00000087368   ⟸   ENSRNOT00000110644
Ensembl Acc Id: ENSRNOP00000093783   ⟸   ENSRNOT00000098458
Ensembl Acc Id: ENSRNOP00000092485   ⟸   ENSRNOT00000105301
Ensembl Acc Id: ENSRNOP00000093663   ⟸   ENSRNOT00000105680
Ensembl Acc Id: ENSRNOP00000079550   ⟸   ENSRNOT00000102474
RefSeq Acc Id: NP_001395895   ⟸   NM_001408966
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127690   ⟸   XM_063271620
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127709   ⟸   XM_063271639
- Peptide Label: isoform X17
- UniProtKB: A0A0G2K681 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127697   ⟸   XM_063271627
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127701   ⟸   XM_063271631
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127712   ⟸   XM_063271642
- Peptide Label: isoform X20
- UniProtKB: F1MAH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127692   ⟸   XM_063271622
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127707   ⟸   XM_063271637
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AFK9 (UniProtKB/TrEMBL),   A0A0G2K681 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127703   ⟸   XM_063271633
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127713   ⟸   XM_063271643
- Peptide Label: isoform X22
- UniProtKB: F1MAH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127702   ⟸   XM_063271632
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127704   ⟸   XM_063271634
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127714   ⟸   XM_063271644
- Peptide Label: isoform X23
- UniProtKB: A0A8I6AKB1 (UniProtKB/TrEMBL),   F1MAH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127695   ⟸   XM_063271625
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127705   ⟸   XM_063271635
- Peptide Label: isoform X13
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127688   ⟸   XM_063271618
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127706   ⟸   XM_063271636
- Peptide Label: isoform X14
- UniProtKB: A0A8I6A7M2 (UniProtKB/TrEMBL),   A0A0G2K681 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127693   ⟸   XM_063271623
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127708   ⟸   XM_063271638
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AFK9 (UniProtKB/TrEMBL),   A0A0G2K681 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127710   ⟸   XM_063271640
- Peptide Label: isoform X18
- UniProtKB: A0A0G2K681 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127689   ⟸   XM_063271619
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127691   ⟸   XM_063271621
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127694   ⟸   XM_063271624
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127696   ⟸   XM_063271626
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127698   ⟸   XM_063271628
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127699   ⟸   XM_063271629
- Peptide Label: isoform X8
- UniProtKB: A0A8I6GIN2 (UniProtKB/TrEMBL),   A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127700   ⟸   XM_063271630
- Peptide Label: isoform X8
- UniProtKB: A0A8I6GIN2 (UniProtKB/TrEMBL),   A0A8I5ZNR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127711   ⟸   XM_063271641
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063127715   ⟸   XM_063271645
- Peptide Label: isoform X24
Protein Domains
CAP-Gly

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JK25-F1-model_v2 AlphaFold Q9JK25 1-1320 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698628
Promoter ID:EPDNEW_R9151
Type:multiple initiation site
Name:AC117299_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01238,340,306 - 38,340,366EPDNEW
RGD ID:13698629
Promoter ID:EPDNEW_R9152
Type:initiation region
Name:Clip1_1
Description:CAP-GLY domain containing linker protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9153  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01238,345,472 - 38,345,532EPDNEW
RGD ID:13698630
Promoter ID:EPDNEW_R9153
Type:single initiation site
Name:Clip1_2
Description:CAP-GLY domain containing linker protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9152  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01238,368,678 - 38,368,738EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:67404 AgrOrtholog
BioCyc Gene G2FUF-19319 BioCyc
Ensembl Genes ENSRNOG00000001247 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001685 ENTREZGENE
  ENSRNOT00000001685.8 UniProtKB/Swiss-Prot
  ENSRNOT00000078530 ENTREZGENE
  ENSRNOT00000088002 ENTREZGENE
  ENSRNOT00000096011 ENTREZGENE
  ENSRNOT00000098458 ENTREZGENE
  ENSRNOT00000102474 ENTREZGENE
  ENSRNOT00000105301 ENTREZGENE
  ENSRNOT00000105680 ENTREZGENE
  ENSRNOT00000110644 ENTREZGENE
Gene3D-CATH 2.30.30.190 UniProtKB/Swiss-Prot
  Vasodilator-stimulated phosphoprotein UniProtKB/Swiss-Prot
InterPro CAP-Gly_dom_sf UniProtKB/Swiss-Prot
  CAP-Gly_domain UniProtKB/Swiss-Prot
  CLIP1_ZNF UniProtKB/Swiss-Prot
KEGG Report rno:65201 UniProtKB/Swiss-Prot
NCBI Gene 65201 ENTREZGENE
PANTHER CAP-GLY DOMAIN-CONTAINING LINKER PROTEIN 1 UniProtKB/Swiss-Prot
  DYNACTIN 1-RELATED MICROTUBULE-BINDING UniProtKB/Swiss-Prot
Pfam CAP_GLY UniProtKB/Swiss-Prot
  CLIP1_ZNF UniProtKB/Swiss-Prot
PhenoGen Clip1 PhenoGen
PROSITE CAP_GLY_1 UniProtKB/Swiss-Prot
  CAP_GLY_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001247 RatGTEx
SMART CAP_GLY UniProtKB/Swiss-Prot
Superfamily-SCOP SSF74924 UniProtKB/Swiss-Prot
TIGR TC218467
UniProt A0A0G2JTX8_RAT UniProtKB/TrEMBL
  A0A0G2K3T3 ENTREZGENE
  A0A0G2K681 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNR1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A7M2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJJ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKB1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GIN2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R7P7_RAT UniProtKB/TrEMBL
  CLIP1_RAT UniProtKB/Swiss-Prot
  F1MAH8 ENTREZGENE, UniProtKB/TrEMBL
  Q4V8P6_RAT UniProtKB/TrEMBL
  Q9JK25 ENTREZGENE
UniProt Secondary A0A0G2K3T3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-18 Clip1  CAP-GLY domain containing linker protein 1  Rsn  restin (Reed-Steinberg cell-expressed intermediate filament-associated protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Rsn  restin (Reed-Steinberg cell-expressed intermediate filament-associated protein)    restin  Name updated 1299863 APPROVED
2002-06-10 Rsn  restin      Name updated 70584 APPROVED
2001-07-26 Rsn  Restin (Reed-Steinberg cell-espressed intermediate      Name updated 61478 APPROVED