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Gene: Cacna2d2 (calcium voltage-gated channel auxiliary subunit alpha2delta 2) Rattus norvegicus

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Symbol:

Cacna2d2

Name:

calcium voltage-gated channel auxiliary subunit alpha2delta 2

RGD ID:

631360

Description:

Enables voltage-gated calcium channel activity. Involved in calcium ion transport. Predicted to be located in membrane. Predicted to be part of voltage-gated calcium channel complex. Predicted to be active in GABA-ergic synapse and presynaptic active zone membrane. Orthologous to human CACNA2D2 (calcium voltage-gated channel auxiliary subunit alpha2delta 2); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; alfentanil pharmacodynamics pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; androgen antagonist.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

calcium channel, voltage dependent, alpha2/delta subunit 2; calcium channel, voltage-dependent, alpha 2/delta subunit 2; voltage-dependent calcium channel subunit alpha-2/delta-2; voltage-gated calcium channel subunit alpha-2/delta-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	116,950,860 - 117,082,159 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	116,950,907 - 117,081,759 (+)	Ensembl				GRCr8
mRatBN7.2	8	108,072,208 - 108,203,516 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,072,454 - 108,203,173 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	113,699,122 - 113,828,659 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	111,898,292 - 112,027,815 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	109,741,072 - 109,870,596 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	116,154,661 - 116,285,643 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,154,736 - 116,284,985 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	115,510,729 - 115,641,903 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	112,643,409 - 112,775,460 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	107,381,970 - 107,508,046 (+)	NCBI		Celera
RGSC_v3.1	8	112,662,863 - 112,794,915 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ataxia (ISO)

Cardiac Arrhythmias (IMP)

Cerebellar Atrophy with Seizures and Variable Developmental Delay (ISO)

childhood absence epilepsy (ISO)

choreatic disease (ISO)

COVID-19 (ISO)

developmental and epileptic encephalopathy (ISO)

epilepsy (ISO,ISS)

Female Infertility (ISO)

generalized epilepsy (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

Myocardial Ischemia (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

androgen antagonist (EXP)

arsenous acid (ISO)

asbestos (ISO)

atrazine (EXP)

barium(0) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylparaben (EXP)

caffeine (ISO)

calcium atom (ISO)

calcium(0) (ISO)

cannabidiol (EXP)

carbamazepine (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

daunorubicin (ISO)

diarsenic trioxide (ISO)

dichloroacetic acid (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

enzacamene (EXP)

ethanol (ISO)

folic acid (ISO)

gabapentin (ISO)

GSK-J4 (ISO)

Licochalcone B (ISO)

methapyrilene (ISO)

mitoxantrone (ISO)

Moniliformin (ISO)

N,N-diethyl-m-toluamide (EXP)

N-ethyl-N-nitrosourea (ISO)

okadaic acid (ISO)

p-menthan-3-ol (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

permethrin (EXP)

phenylmercury acetate (ISO)

propanal (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (EXP,ISO)

streptozocin (ISO)

tetrachloromethane (EXP)

thapsigargin (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

tunicamycin (ISO)

valproic acid (EXP,ISO)

vanadium atom (ISO)

vanadium(0) (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion transmembrane transport (IEA)

calcium ion transport (IDA,IEA)

monoatomic ion transmembrane transport (IEA)

monoatomic ion transport (IEA)

muscle cell development (ISO)

neuromuscular junction development (ISO)

positive regulation of organ growth (ISO)

regulation of multicellular organism growth (ISO)

regulation of neurotransmitter receptor localization to postsynaptic specialization membrane (IEA,ISO)

rhythmic synaptic transmission (ISO)

Cellular Component

GABA-ergic synapse (IEA,ISO)

membrane (IEA)

monoatomic ion channel complex (IEA)

presynaptic active zone membrane (IEA,ISO)

voltage-gated calcium channel complex (IBA,IEA,ISO,TAS)

Molecular Function

calcium channel activity (IEA)

calcium channel regulator activity (TAS)

metal ion binding (IEA)

voltage-gated calcium channel activity (IBA,IDA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

acebutolol pharmacodynamics pathway (ISO)

adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway (ISO)

alfentanil pharmacodynamics pathway (ISO)

amiodarone pharmacodynamics pathway (ISO)

amlodipine pharmacodynamics pathway (ISO)

arrhythmogenic right ventricular cardiomyopathy pathway (IEA)

atenolol pharmacodynamics pathway (ISO)

betaxolol pharmacodynamics pathway (ISO)

bisoprolol pharmacodynamics pathway (ISO)

bupivacaine pharmacodynamics pathway (ISO)

bupranolol drug pathway (ISO)

bupranolol pharmacodynamics pathway (ISO)

buprenorphine pharmacodynamics pathway (ISO)

carvedilol pharmacodynamics pathway (ISO)

chloroprocaine pharmacodynamics pathway (ISO)

citalopram pharmacodynamics pathway (ISO)

cocaine pharmacodynamics pathway (ISO)

codeine and morphine pharmacodynamics pathway (ISO)

desipramine pharmacodynamics pathway (ISO)

dilated cardiomyopathy pathway (IEA)

diltiazem pharmacodynamics pathway (ISO)

diphenoxylate pharmacodynamics pathway (ISO)

disopyramide pharmacodynamics pathway (ISO)

dobutamine pharmacodynamics pathway (ISO)

escitalopram pharmacodynamics pathway (ISO)

esmolol pharmacodynamics pathway (ISO)

ethylmorphine pharmacodynamics pathway (ISO)

felodipine pharmacokinetics pathway (ISO)

fentanyl pharmacodynamics pathway (ISO)

flecainde pharmacodynamics pathway (ISO)

fluoxetine pharmacodynamics pathway (ISO)

fosphenytoin pharmacodynamics pathway (ISO)

gliclazide pharmacodynamics pathway (ISO)

glyburide pharmacodynamics pathway (ISO)

heroin pharmacodynamics pathway (ISO)

hydrocodone pharmacodynamics pathway (ISO)

hydromorphone pharmacodynamics pathway (ISO)

hypertrophic cardiomyopathy pathway (IEA)

ibutilide pharmacodynamics pathway (ISO)

imipramine pharmacodynamics pathway (ISO)

isoprenaline pharmacodynamics pathway (ISO)

isradipine pharmacodynamics pathway (ISO)

levacetylmethadol pharmacodynamics pathway (ISO)

levobunolol pharmacodynamics pathway (ISO)

levobupivacaine phgarmacodynamics pathway (ISO)

levorphanol pharmacodynamics pathway (ISO)

lidocaine pharmacodynamics pathway (ISO)

mepivacaine pharmacodynamics pathway (ISO)

methadone pharmacodynamics pathway (ISO)

metoprolol pharmacodynamics pathway (ISO)

mexiletine pharmacodynamics pathway (ISO)

mitogen activated protein kinase signaling pathway (IEA)

nadolol pharmacodynamics pathway (ISO)

nalbuphine pharmacodynamics pathway (ISO)

naloxone pharmacodynamics pathway (ISO)

naltrexone pharmacodynamics pathway (ISO)

nebivolol pharmacodynamics pathway (ISO)

nicotine pharmacodynamics pathway (ISO)

nifedipine pharmacodynamics pathway (ISO)

nimodipine pharmacodynamics pathway (ISO)

nisoldipine pharmacodynamics pathway (ISO)

nitrendipine pharmacodynamics pathway (ISO)

oxybuprocaine pharmacodynamics pathway (ISO)

oxycodone pharmacodynamics pathway (ISO)

oxymorphone pharmacodynamics pathway (ISO)

penbutolol pharmacodynamics pathway (ISO)

pentazocine pharmacodynamics pathway (ISO)

phenytoin pharmacodynamics pathway (ISO)

pindolol pharmacodynamics pathway (ISO)

potassium channel inhibitors pharmacodynamics pathway (ISO)

prilocaine pharmacodynamics pathway (ISO)

procainamide pharmacodynamics pathway (ISO)

procaine pharmacodynamics pathway (ISO)

propranolol pharmacodynamics pathway (ISO)

quinidine pharmacodynamics pathway (ISO)

remifentanil pharmacodynamics pathway (ISO)

ropivacaine pharmacodynamics pathway (ISO)

sotalol pharmacodynamics pathway (ISO)

timolol pharmacodynamics pathway (ISO)

tramadol pharmacodynamics pathway (ISO)

verapamil pharmacodynamics pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Molecular cloning of calcium channel alpha(2)delta-subunits from rat atria and the differential regulation of their expression by IGF-1.	Chu PJ and Best PM, J Mol Cell Cardiol 2003 Feb;35(2):207-15.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	miR-1231 exacerbates arrhythmia by targeting calciumchannel geneCACNA2D2in myocardial infarction.	Zhang J, etal., Am J Transl Res. 2017 Apr 15;9(4):1822-1833. eCollection 2017.

Additional References at PubMed

PMID:9349522	PMID:11487633	PMID:16134135	PMID:16474392	PMID:16636499	PMID:17320843	PMID:19818485	PMID:21700703	PMID:24055266

Genomics

Comparative Map Data

Cacna2d2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	116,950,860 - 117,082,159 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	116,950,907 - 117,081,759 (+)	Ensembl				GRCr8
mRatBN7.2	8	108,072,208 - 108,203,516 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,072,454 - 108,203,173 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	113,699,122 - 113,828,659 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	111,898,292 - 112,027,815 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	109,741,072 - 109,870,596 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	116,154,661 - 116,285,643 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,154,736 - 116,284,985 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	115,510,729 - 115,641,903 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	112,643,409 - 112,775,460 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	107,381,970 - 107,508,046 (+)	NCBI		Celera
RGSC_v3.1	8	112,662,863 - 112,794,915 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

CACNA2D2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	50,362,613 - 50,504,244 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	50,362,613 - 50,504,244 (-)	Ensembl			hg38	GRCh38
GRCh37	3	50,400,044 - 50,541,675 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	50,375,234 - 50,515,896 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	50,375,233 - 50,515,896	NCBI
Celera	3	50,373,061 - 50,513,724 (-)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	50,455,831 - 50,596,932 (-)	NCBI		HuRef
CHM1_1	3	50,352,505 - 50,493,122 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	50,392,335 - 50,534,145 (-)	NCBI		T2T-CHM13v2.0

Cacna2d2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	107,276,948 - 107,406,545 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	107,276,811 - 107,406,542 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	107,399,733 - 107,529,346 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	107,399,612 - 107,529,343 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	107,302,211 - 107,431,674 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	107,257,713 - 107,387,159 (+)	NCBI		MGSCv36	mm8
Celera	9	107,007,997 - 107,138,095 (+)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	58.02	NCBI

Cacna2d2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	2,163,529 - 2,283,508 (-)	Ensembl
ChiLan1.0	NW_004955532	2,163,529 - 2,283,509 (-)	NCBI	ChiLan1.0	ChiLan1.0

CACNA2D2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	50,343,478 - 50,484,673 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	50,348,253 - 50,489,448 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	50,288,926 - 50,430,152 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	51,524,200 - 51,638,249 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	51,526,075 - 51,640,406 (-)	Ensembl			panPan2	panpan1.1

CACNA2D2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	38,859,047 - 38,995,239 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	38,883,530 - 38,993,273 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	38,778,136 - 38,916,454 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	39,213,098 - 39,351,432 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	39,212,486 - 39,351,069 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	38,580,983 - 38,719,283 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	38,984,749 - 39,122,858 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	39,264,526 - 39,402,846 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cacna2d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	65,127,442 - 65,263,213 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	1,889,846 - 2,023,715 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	1,889,811 - 2,023,710 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CACNA2D2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	32,845,115 - 32,988,774 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	32,845,110 - 32,988,851 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	36,023,325 - 36,167,052 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CACNA2D2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	11,751,026 - 11,891,407 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	11,749,727 - 11,890,924 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	155,095,234 - 155,235,652 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cacna2d2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	4,212,901 - 4,345,849 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	4,211,189 - 4,346,119 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cacna2d2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	98,714,996 - 98,845,896 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cacna2d2
1019 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	41
Count of miRNA genes:	38
Interacting mature miRNAs:	39
Transcripts:	ENSRNOT00000021218
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
631217	Activ1	Activity QTL 1	15.9		voluntary movement trait (VT:0003491)	number of photobeam interruptions in an experimental apparatus (CMO:0001517)	8	111249511	117802327	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	87	59	6	348	187	11	141	78	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001433258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_175592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC139927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF486277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021218 ⟹ ENSRNOP00000021216

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	116,950,907 - 117,080,262 (+)	Ensembl
mRatBN7.2 Ensembl	8	108,072,454 - 108,201,619 (+)	Ensembl
Rnor_6.0 Ensembl	8	116,154,736 - 116,283,746 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081242 ⟹ ENSRNOP00000071469

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	116,951,106 - 117,081,759 (+)	Ensembl
mRatBN7.2 Ensembl	8	108,072,454 - 108,203,173 (+)	Ensembl
Rnor_6.0 Ensembl	8	116,154,913 - 116,284,985 (+)	Ensembl

RefSeq Acc Id:

NM_175592 ⟹ NP_783182

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	116,951,106 - 117,080,262 (+)	NCBI
mRatBN7.2	8	108,072,454 - 108,201,619 (+)	NCBI
Rnor_6.0	8	116,154,736 - 116,283,746 (+)	NCBI
Rnor_5.0	8	115,510,729 - 115,641,903 (+)	NCBI
RGSC_v3.4	8	112,643,409 - 112,775,460 (+)	RGD
Celera	8	107,381,970 - 107,508,046 (+)	RGD

Sequence:

show sequence

ATGGCGGTGCCGGCTCGGACCTGCGGCGCTTCTTGGCCCGGCCCGGTGCGGACCGCTCGCCCCT
GGCCCGGTCGCGGTCCCCGGCCCTGCCCTGACCCCCGGGGCCCAGCGTCCGGGCCCGCACGCCC
GCTCTTGCTACTGCTGCCGCCTCTGCTGCTTTTACCGCTGCTCACCGCCCCCGGCGCCTCTGCC
TACAGCTTCCCCCAGCAGCACACGATGCAGCACTGGGCCCGGCGCCTGGAGCAGGAGATTGACG
GTGTGATGCGGATTTTTGGAGGCGTGCAGCAGCTCCGAGAGATCTACAAGGACAATCGGAACCT
GTTTGATGTGCAGGAGAATGAACCACAGAAACTAGTGGAGAAGGTGGCAGGGGACATTGAGAGC
CTGCTGGACAGAAAGGTCCAGGCCTTGAAGAGACTGGCTGACGCTGCAGAGAATTTCCAGAAAG
CCCACCGCTGGCAAGACAACATCAAGGAGGAAGACATCATGTACTATGACGCCAAGGCTGACGC
CGAGCTGGATGATCCTGAGAGTGAGGATATGGAGAGGGGATCCAAGACCAGCGCCTTAAGGCTG
GACTTCATCGAGGAGCCAAACTTCAAGAACAAAGTCAACTATTCATACACGGCGGTGCAGATCC
CCACAGATATCTACAAAGGCTCTACCGTCATCCTCAATGAGCTTAACTGGACGGAGGCCCTGGA
GAATGTCTTCATTGAGAACCGTAGGCAAGACCCTACACTGTTGTGGCAAGTCTTCGGCAGTGCC
ACGGGAGTCACCCGCTATTACCCAGCCACACCGTGGCGAGCCCCCAAGAAGATTGACCTGTACG
ATGTCAGAAGACGACCCTGGTATATACAGGGGGCCTCATCACCCAAGGACATGGTCATCATTGT
GGATGTGAGTGGCAGTGTGAGCGGCCTGACGCTGAAGCTGATGAAGACGTCTGTCTGTGAGATG
CTAGACACACTCTCCGATGATGACTATGTGAATGTGGCCTCATTCAACGAGAAGGCGCAGCCTG
TGTCTTGCTTCACACACCTGGTGCAGGCCAATGTGCGGAACAAGAAGGTGTTCAAGGAAGCTGT
GCAGGGCATGGTGGCCAAGGGCACCACAGGCTACAAGGCTGGCTTTGAGTATGCCTTTGACCAG
CTACAGAATTCCAACATCACCCGTGCTAACTGCAATAAGATGATCATGATGTTCACGGACGGGG
GAGAGGATCGCGTGCAGGACGTCTTTGAAAAGTATAATTGGCCCAATCGGACGGTACGCGTCTT
CACGTTCTCCGTAGGACAGCATAACTATGATGTCACACCCCTGCAGTGGATGGCTTGTACTAAC
AAAGGTTACTATTTTGAGATCCCTTCCATCGGAGCCATCCGCATCAACACACAGGAATACCTGG
ATGTGCTGGGTAGGCCCATGGTCCTGGCAGGCAAGGACGCCAAGCAAGTGCAATGGACAAACGT
GTATGAAGATGCGCTGGGGCTGGGGTTGGTGGTAACAGGGACTCTCCCTGTTTTCAACCTGACA
CAGGATGGCCCTGGGGACAAGAAGAACCAGCTAATCCTGGGTGTCATGGGCATAGATGTGGCCC
TGAATGACATCAAAAGGCTGACTCCCAACTACACACTTGGCGCCAATGGCTACGTGTTCGCCAT
CGACCTGAATGGCTATGTGTTGCTACATCCCAATCTCAAGCCCCAGATTACCAACTTCCGGGAG
CCTGTGACCTTGGACTTCCTGGATGCAGAGCTGGAAGATGAGAACAAGGAGGAGATCCGTCGTA
GTATGATTGACGGAGACAAAGGCCACAAGCAGATCAGAACCTTGGTCAAATCCCTGGATGAGAG
GTACATAGATGAAGTGATTCGGAACTACACCTGGGTGCCTATAAGGAGTACCAACTACAGCCTG
GGGCTGGTGCTCCCACCCTACAGCACCTACTACCTCCAAGCCAACCTCAGCGACCAGATCCTGC
AGGTCAAGTTGCCAATCAGCAAACTGAAGGATTTTGAGTTCCTGCTCCCCAGCAGCTTTGAGTC
TGAAGGACATGTTTTCATTGCTCCCAGAGAGTATTGCAAGGATTTGAATGCCTCAGACAACAAC
ACCGAGTTCCTGAAAAACTTCATTGAGCTCATGGAGAAAGTGACTCCGGACTCCAAGCAGTGCA
ATAACTTCCTTCTGCATAACTTGATTTTGGACACGGGCATTACGCAGCAGTTAGTGGAACGCGT
CTGGCGGGACCAAGATCTCAACACGTACAGCCTGCTAGCTGTATTTGCTGCCACTGACGGTGGC
ATCACACGTGTCTTCCCGAACAAGGCAGCTGAAGACTGGACAGAAAACCCTGAACCCTTCAATG
CCAGCTTCTACCGCCGCAGCCTGGATAACCGTGGTTATATCTTCAAGCCCCCGCACCAGGACTC
CCTGTTAAGGCCACTGGAGCTGGAGAATGACACAGTAGGCGTCCTCGTCAGCACAGCTGTAGAG
CTCAGTCTGGGTCGCCGCACACTGAGGCCAGCAGTGGTGGGTGTCAAACTGGACCTAGAGGCTT
GGGCTGAAAAGTTCAAGGTGCTTGCCAGCAACCGTACCCATCAGGACCAACCTCAGAAGCAGTG
CGGCCCCAGCAGCCACTGTGAGATGGACTGCGAGGTAAACAACGAGGACCTACTCTGTGTCCTC
ATTGATGACGGGGGATTCCTGGTGCTGTCAAACCAAAACCACCAGTGGGACCAGGTTGGCAGGT
TCTTCAGTGAGGTGGATGCCAACCTGATGCTGGCACTGTACAATAACTCCTTCTACACCAGAAA
GGAGTCCTATGACTATCAGGCAGCTTGTGCCCCTCAGCCTCCTGGCAACCTGGGTGCTGCACCC
AGGGGTGTCTTTGTGCCCACCATTGCAGATTTCCTTAACTTGGCCTGGTGGACCTCTGCTGCCG
CCTGGTCCTTATTCCAGCAACTACTTTATGGTCTCATCTATCACAGCTGGTTCCAGGCAGACCC
GGCAGAAGCCGAGGGCAGCCCCGAGACGCGCGAGAGCAGCTGCGTCATGAAACAAACCCAGTAC
TACTTCGGCTCGGTGAACGCGTCCTATAACGCCATCATCGACTGCGGAAACTGCAGCAGGCTGT
TCCACGCGCAGAGACTGACCAACACCAACCTTCTGTTCGTGGTGGCGGAGAAGCCGCTGTGCAG
CCAGTGCGAGGTCGGCCGGCTGCTACAAAAGGAGACACACTGCCCAGCGGACGGCCCGGAGCAG
TGTGAGCTGGTGCAGAGACCGCGATACCGAACAGGCCCGCACATCTGTTTTGACTACAATGCGA
CGGAAGATACCTCAGACTGTGGCCGCGGAGCCTCCTTCCCTCCGTCGCTGGGCGTCTTGGTTTC
CCTGCAGCTGTTGCTCCTCCTAGGCCTGCCACCTCGGCCGCAGCCTCAAATCCATTCCTTCACG
CCCTCTCGCCGCCTCTGAACTACCCACACACACACATCATAGCCCC

hide sequence

RefSeq Acc Id:

XM_006243735 ⟹ XP_006243797

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	116,950,860 - 117,082,159 (+)	NCBI
mRatBN7.2	8	108,072,208 - 108,203,516 (+)	NCBI
Rnor_6.0	8	116,154,661 - 116,285,643 (+)	NCBI
Rnor_5.0	8	115,510,729 - 115,641,903 (+)	NCBI

Sequence:

show sequence

CGCCCCCCCCTCCATCCCGCCGCCGCCGCCGCCGTCCCCCCTCCCTCCCCGCGGCGCCGCATCT
TGAATGGAAACATGGCGGTGCCGGCTCGGACCTGCGGCGCTTCTTGGCCCGGCCCGGTGCGGAC
CGCTCGCCCCTGGCCCGGTCGCGGTCCCCGGCCCTGCCCTGACCCCCGGGGCCCAGCGTCCGGG
CCCGCACGCCCGCTCTTGCTACTGCTGCCGCCTCTGCTGCTTTTACCGCTGCTCACCGCCCCCG
GCGCCTCTGCCTACAGCTTCCCCCAGCAGCACACGATGCAGCACTGGGCCCGGCGCCTGGAGCA
GGAGATTGACGGTGTGATGCGGATTTTTGGAGGCGTGCAGCAGCTCCGAGAGATCTACAAGGAC
AATCGGAACCTGTTTGATGTGCAGGAGAATGAACCACAGAAACTAGTGGAGAAGGTGGCAGGGG
ACATTGAGAGCCTGCTGGACAGAAAGGTCCAGGCCTTGAAGAGACTGGCTGACGCTGCAGAGAA
TTTCCAGAAAGCCCACCGCTGGCAAGACAACATCAAGGAGGAAGACATCATGTACTATGACGCC
AAGGCTGACGCCGAGCTGGATGATCCTGAGAGTGAGGATATGGAGAGGGGATCCAAGACCAGCG
CCTTAAGGCTGGACTTCATCGAGGAGCCAAACTTCAAGAACAAAGTCAACTATTCATACACGGC
GGTGCAGATCCCCACAGATATCTACAAAGGCTCTACCGTCATCCTCAATGAGCTTAACTGGACG
GAGGCCCTGGAGAATGTCTTCATTGAGAACCGTAGGCAAGACCCTACACTGTTGTGGCAAGTCT
TCGGCAGTGCCACGGGAGTCACCCGCTATTACCCAGCCACACCGTGGCGAGCCCCCAAGAAGAT
TGACCTGTACGATGTCAGAAGACGACCCTGGTATATACAGGGGGCCTCATCACCCAAGGACATG
GTCATCATTGTGGATGTGAGTGGCAGTGTGAGCGGCCTGACGCTGAAGCTGATGAAGACGTCTG
TCTGTGAGATGCTAGACACACTCTCCGATGATGACTATGTGAATGTGGCCTCATTCAACGAGAA
GGCGCAGCCTGTGTCTTGCTTCACACACCTGGTGCAGGCCAATGTGCGGAACAAGAAGGTGTTC
AAGGAAGCTGTGCAGGGCATGGTGGCCAAGGGCACCACAGGCTACAAGGCTGGCTTTGAGTATG
CCTTTGACCAGCTACAGAATTCCAACATCACCCGTGCTAACTGCAATAAGATGATCATGATGTT
CACGGACGGGGGAGAGGATCGCGTGCAGGACGTCTTTGAAAAGTATAATTGGCCCAATCGGACG
GTACGCGTCTTCACGTTCTCCGTAGGACAGCATAACTATGATGTCACACCCCTGCAGTGGATGG
CTTGTACTAACAAAGGTTACTATTTTGAGATCCCTTCCATCGGAGCCATCCGCATCAACACACA
GGAATACCTGGATGTGCTGGGTAGGCCCATGGTCCTGGCAGGCAAGGACGCCAAGCAAGTGCAA
TGGACAAACGTGTATGAAGATGCGCTGGGGCTGGGGTTGGTGGTAACAGGGACTCTCCCTGTTT
TCAACCTGACACAGGATGGCCCTGGGGAAAAGAAGAACCAGCTAATCCTGGGTGTCATGGGCAT
AGATGTGGCCCTGAATGACATCAAAAGGCTGACTCCCAACTACACACTTGGCGCCAATGGCTAC
GTGTTCGCCATCGACCTGAATGGCTATGTGTTGCTACATCCCAATCTCAAGCCCCAGACTACCA
ACTTCCGGGAGCCTGTGACCTTGGACTTCCTGGATGCAGAGCTGGAAGATGAGAACAAGGAGGA
GATCCGTCGTAGTATGATTGACGGAGACAAAGGCCACAAGCAGATCAGAACCTTGGTCAAATCC
CTGGATGAGAGGTACATAGATGAAGTGATTCGGAACTACACCTGGGTGCCTATAAGGAGTACCA
ACTACAGCCTGGGGCTGGTGCTCCCACCCTACAGCACCTACTACCTCCAAGCCAACCTCAGCGA
CCAGATCCTGCAGGTCAAGTTGCCAATCAGCAAACTGAAGGATTTTGAGTTCCTGCTCCCCAGC
AGCTTTGAGTCTGAAGGACATGTTTTCATTGCTCCCAGAGAGTATTGCAAGGATTTGAATGCCT
CAGACAACAACACCGAGTTCCTGAAAAACTTCATTGAGCTCATGGAGAAAGTGACTCCGGACTC
CAAGCAGTGCAATAACTTCCTTCTGCATAACTTGATTTTGGACACGGGCATTACGCAGCAGTTA
GTGGAACGCGTCTGGCGGGACCAAGATCTCAACACGTACAGCCTGCTAGCTGTATTTGCTGCCA
CTGACGGTGGCATCACACGTGTCTTCCCGAACAAGGCAGCTGAAGACTGGACAGAAAACCCTGA
ACCCTTCAATGCCAGCTTCTACCGCCGCAGCCTGGATAACCGTGGTTATATCTTCAAGCCCCCG
CACCAGGACTCCCTGTTAAGGCCACTGGAGCTGGAGAATGACACAGTAGGCGTCCTCGTCAGCA
CAGCTGTAGAGCTCAGTCTGGGTCGCCGCACACTGAGGCCAGCAGTGGTGGGTGTCAAACTGGA
CCTAGAGGCTTGGGCTGAAAAGTTCAAGGTGCTTGCCAGCAACCGTACCCATCAGGACCAACCT
CAGAAGTGCGGCCCCAGCAGCCACTGTGAGATGGACTGCGAGGTAAACAACGAGGACCTACTCT
GTGTCCTCATTGATGACGGGGGATTCCTGGTGCTGTCAAACCAGAACCACCAGTGGGACCAGGT
TGGCAGATTCTTCAGTGAGGTGGATGCCAACCTGATGCTGGCACTGTACAATAACTCCTTCTAC
ACCAGAAAGGAGTCCTATGACTATCAGGCAGCTTGTGCCCCTCAGCCTCCTGGCAACCTGGGTG
CTGCACCCAGGGGTGTCTTTGTGCCCACCATTGCAGATTTCCTTAACTTGGCCTGGTGGACCTC
TGCTGCCGCCTGGTCCTTATTCCAGCAACTACTTTATGGTCTCATCTATCACAGCTGGTTCCAG
GCAGACCCGGCAGAAGCCGAGGGCAGCCCCGAGACGCGCGAGAGCAGCTGCGTCATGAAACAAA
CCCAGTACTACTTCGGCTCGGTGAACGCGTCCTATAACGCCATCATCGACTGCGGAAACTGCAG
CAGGCTGTTCCACGCGCAGAGACTGACCAACACCAACCTTCTGTTCGTGGTGGCGGAGAAGCCG
CTGTGCAGCCAGTGCGAGGTCGGCCGGCTGCTACAAAAGGAGACACACTCGGACGGCCCGGAGC
AGTGTGAGCTGGTGCAGAGACCGCGATACCGAAGAGGCCCGCACATCTGTTTTGACTACAATGC
GACGGAAGATACCTCAGACTGTGGCCGCGGAGCCTCCTTCCCTCCGTCGCTGGGCGTCTTGGTT
TCCCTGCAGCTGTTGCTCCTCCTAGGCCTGCCACCTCGGCCGCAGCCTCAAATCCATTCCTTCG
CTGCCTCTCGCCGCCTCTGAACTACCCACACACACACATCATAGCCCCCACCCCCACCCCGCCT
TGGCCTCCTAGCCTTTTCGCTCACCCTCCCATGCCACATTCCCCAATCTAGATCCTTGGCCAGT
CTCTCCTGAAGGAACTGGGCCCCTTCCCCGGGGCCTGTGCCTTGGGGCAGGGGAGCCCCAAAGT
AAGGTGCCATGGTGTTTGGCACTCAAGATTTATCTCACCCTTGAACTGTCCAAGTGCCCACAGT
CCCTGGACTCACCCCTGTGGGTTGGGACAGGAGGCCACTAGTACCGATGCCAAACCAGGCCTTC
ACCAACCCACCTGCCTGGAGATTTTCTCTATGTAGGCAACCCTGCCACTGCTGGGCGCCTCTAA
CTGGCCCTTTGGCCCCACCCAGGCCCAAACTTACCTTCTCTGGGGAAAAAACTAGGAGAGATGG
TAGTGGTGAGAGAGATTCTGGGGGCACCCCTTCCCCATAGGCCTCGGGCCGTTCCAGGCTACAC
CACAAACCCACACCTCGGCCTTGCAGGTATCAGGACAGCCTCACGATGACATCAGCTTAGGCAC
ACCCCACAGACACCTGGACCTCAGAGAGCAGAAACTGGACTCTCACTAGACATGCCCGAGAGGG
AACACACAAACAGACACACACCATGGGGGACCCACAAAGCCTTACACAGGGCGAGAGGTCAGTG
AAGGGGCTGACCTGTGTGTTCCTTCTCCGCTCACCTCTGCCTCCACTCTGAGATGCAGCCTGGC
AGGCCCTCCCATCTCTAGAACTGAATGTCAGACCGTGCCAAATGCTAGGGGAAGGCCTCTGTTT
CGCCCCTAGCCACCAGTGTCCCCAAATGCCCCTCACCCTGCCAGGTGCTCATTGTAACCATTGC
TCACTAGTGTCAGGCCCCTAGTAGGACCACACGTCACTGCCTGAACCCCTTTGGCAGAAGAACC
CCGCCAGACATTGTACTTTGCCTTAGCAGGGGTGACTTGGTCTCTCCTGGCTGGGCCATCCCAT
CCCCAATCTGGTTCTTACATACTCAGGCCTAATTCCCTCTTCACACACACACACACACACACAC
ACACACACACACACACACACACAGTCCCTGCCCCTAGGAGGCCATATTGCCCCTCCCTTGCTGA
ACACACACTTGCACCAAGCACATGTGTAGTCAACCATACTGCACACACAGAGGCTGGGCCTGGG
ACACATCTCTTCACACCATTCATTCTGTCATTTCTCCCAAAGGCATCGTAACCTGGGGGCCAGG
CGGGGACTGAGGGCAGGGTGGGGGGGTGTGTGGCCATGAGGCTCAGATGGACTGGGAGGAGGGT
GGGAGGGTGGTACATTAATTAATGGCTCCGTTAATTAATGTCATGTTGCGTGTTGCTTTCTCAG
TGTGTGTATGGTCCATGCCCAATGCTGGTGGCAGGGTGGGTGTCCATGATGTGTGCCCAGCCTG
GATGTCAGCTGTGTCCTGTGGGGGCGTGTGTGTAACTGTAGTGTAGTCAGGTGCTCAACGGAGA
ATACAAACGAAAAAAGAAACAAACGTATACAGAAAAATAAATATATATTTTAAGTTTAAAAAAA
CAAACGGAACCAGACAAAACAATTCCCATCAGGTAGTTGTCCACCCCCCCAGCTGGGTTCAATC
CTCTCATCACACACCTGACCTAGCTGTCCCCTCACCATGGGCTGGGGGACTTGGGGGCCATTTC
CTTTGCCCCGTTTTTTGTTTTGTTTTTTTTTTGTTGTTGTTTTGTTTTGTTTTGGTTGTTATTC
TATTTTGTACAGACAAGTTGGGAAAACAACAGCGACAAAAAAAAAGTCGAGAAACTTTGTAAAA
TATTGTGTGTGTGATTCCTTGTAAAATATTTTCAAATGGTTTATTACAGAAGATCAGTTATTAA
ATAATGTTCATATTTTCACTTCAAA

hide sequence

RefSeq Acc Id:

XM_006243736 ⟹ XP_006243798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	116,950,860 - 117,082,159 (+)	NCBI
mRatBN7.2	8	108,072,208 - 108,203,516 (+)	NCBI
Rnor_6.0	8	116,154,661 - 116,285,643 (+)	NCBI
Rnor_5.0	8	115,510,729 - 115,641,903 (+)	NCBI

Sequence:

show sequence

CGCCCCCCCCTCCATCCCGCCGCCGCCGCCGCCGTCCCCCCTCCCTCCCCGCGGCGCCGCATCT
TGAATGGAAACATGGCGGTGCCGGCTCGGACCTGCGGCGCTTCTTGGCCCGGCCCGGTGCGGAC
CGCTCGCCCCTGGCCCGGTCGCGGTCCCCGGCCCTGCCCTGACCCCCGGGGCCCAGCGTCCGGG
CCCGCACGCCCGCTCTTGCTACTGCTGCCGCCTCTGCTGCTTTTACCGCTGCTCACCGCCCCCG
GCGCCTCTGCCTACAGCTTCCCCCAGCAGCACACGATGCAGCACTGGGCCCGGCGCCTGGAGCA
GGAGATTGACGGTGTGATGCGGATTTTTGGAGGCGTGCAGCAGCTCCGAGAGATCTACAAGGAC
AATCGGAACCTGTTTGATGTGCAGGAGAATGAACCACAGAAACTAGTGGAGAAGGTGGCAGGGG
ACATTGAGAGCCTGCTGGACAGAAAGGTCCAGGCCTTGAAGAGACTGGCTGACGCTGCAGAGAA
TTTCCAGAAAGCCCACCGCTGGCAAGACAACATCAAGGAGGAAGACATCATGTACTATGACGCC
AAGGCTGACGCCGAGCTGGATGATCCTGAGAGTGAGGATATGGAGAGGGGATCCAAGACCAGCG
CCTTAAGGCTGGACTTCATCGAGGAGCCAAACTTCAAGAACAAAGTCAACTATTCATACACGGC
GGTGCAGATCCCCACAGATATCTACAAAGGCTCTACCGTCATCCTCAATGAGCTTAACTGGACG
GAGGCCCTGGAGAATGTCTTCATTGAGAACCGTAGGCAAGACCCTACACTGTTGTGGCAAGTCT
TCGGCAGTGCCACGGGAGTCACCCGCTATTACCCAGCCACACCGTGGCGAGCCCCCAAGAAGAT
TGACCTGTACGATGTCAGAAGACGACCCTGGTATATACAGGGGGCCTCATCACCCAAGGACATG
GTCATCATTGTGGATGTGAGTGGCAGTGTGAGCGGCCTGACGCTGAAGCTGATGAAGACGTCTG
TCTGTGAGATGCTAGACACACTCTCCGATGATGACTATGTGAATGTGGCCTCATTCAACGAGAA
GGCGCAGCCTGTGTCTTGCTTCACACACCTGGTGCAGGCCAATGTGCGGAACAAGAAGGTGTTC
AAGGAAGCTGTGCAGGGCATGGTGGCCAAGGGCACCACAGGCTACAAGGCTGGCTTTGAGTATG
CCTTTGACCAGCTACAGAATTCCAACATCACCCGTGCTAACTGCAATAAGATGATCATGATGTT
CACGGACGGGGGAGAGGATCGCGTGCAGGACGTCTTTGAAAAGTATAATTGGCCCAATCGGACG
GTACGCGTCTTCACGTTCTCCGTAGGACAGCATAACTATGATGTCACACCCCTGCAGTGGATGG
CTTGTACTAACAAAGGTTACTATTTTGAGATCCCTTCCATCGGAGCCATCCGCATCAACACACA
GGAATACCTGGATGTGCTGGGTAGGCCCATGGTCCTGGCAGGCAAGGACGCCAAGCAAGTGCAA
TGGACAAACGTGTATGAAGATGCGCTGGGGCTGGGGTTGGTGGTAACAGGGACTCTCCCTGTTT
TCAACCTGACACAGGATGGCCCTGGGGAAAAGAAGAACCAGCTAATCCTGGGTGTCATGGGCAT
AGATGTGGCCCTGAATGACATCAAAAGGCTGACTCCCAACTACACACTTGGCGCCAATGGCTAC
GTGTTCGCCATCGACCTGAATGGCTATGTGTTGCTACATCCCAATCTCAAGCCCCAGACTACCA
ACTTCCGGGAGCCTGTGACCTTGGACTTCCTGGATGCAGAGCTGGAAGATGAGAACAAGGAGGA
GATCCGTCGTAGTATGATTGACGGAGACAAAGGCCACAAGCAGATCAGAACCTTGGTCAAATCC
CTGGATGAGAGGTACATAGATGAAGTGATTCGGAACTACACCTGGGTGCCTATAAGGAGTACCA
ACTACAGCCTGGGGCTGGTGCTCCCACCCTACAGCACCTACTACCTCCAAGCCAACCTCAGCGA
CCAGATCCTGCAGGTCAAGTATTTTGAGTTCCTGCTCCCCAGCAGCTTTGAGTCTGAAGGACAT
GTTTTCATTGCTCCCAGAGAGTATTGCAAGGATTTGAATGCCTCAGACAACAACACCGAGTTCC
TGAAAAACTTCATTGAGCTCATGGAGAAAGTGACTCCGGACTCCAAGCAGTGCAATAACTTCCT
TCTGCATAACTTGATTTTGGACACGGGCATTACGCAGCAGTTAGTGGAACGCGTCTGGCGGGAC
CAAGATCTCAACACGTACAGCCTGCTAGCTGTATTTGCTGCCACTGACGGTGGCATCACACGTG
TCTTCCCGAACAAGGCAGCTGAAGACTGGACAGAAAACCCTGAACCCTTCAATGCCAGCTTCTA
CCGCCGCAGCCTGGATAACCGTGGTTATATCTTCAAGCCCCCGCACCAGGACTCCCTGTTAAGG
CCACTGGAGCTGGAGAATGACACAGTAGGCGTCCTCGTCAGCACAGCTGTAGAGCTCAGTCTGG
GTCGCCGCACACTGAGGCCAGCAGTGGTGGGTGTCAAACTGGACCTAGAGGCTTGGGCTGAAAA
GTTCAAGGTGCTTGCCAGCAACCGTACCCATCAGGACCAACCTCAGAAGCAGTGCGGCCCCAGC
AGCCACTGTGAGATGGACTGCGAGGTAAACAACGAGGACCTACTCTGTGTCCTCATTGATGACG
GGGGATTCCTGGTGCTGTCAAACCAGAACCACCAGTGGGACCAGGTTGGCAGATTCTTCAGTGA
GGTGGATGCCAACCTGATGCTGGCACTGTACAATAACTCCTTCTACACCAGAAAGGAGTCCTAT
GACTATCAGGCAGCTTGTGCCCCTCAGCCTCCTGGCAACCTGGGTGCTGCACCCAGGGGTGTCT
TTGTGCCCACCATTGCAGATTTCCTTAACTTGGCCTGGTGGACCTCTGCTGCCGCCTGGTCCTT
ATTCCAGCAACTACTTTATGGTCTCATCTATCACAGCTGGTTCCAGGCAGACCCGGCAGAAGCC
GAGGGCAGCCCCGAGACGCGCGAGAGCAGCTGCGTCATGAAACAAACCCAGTACTACTTCGGCT
CGGTGAACGCGTCCTATAACGCCATCATCGACTGCGGAAACTGCAGCAGGCTGTTCCACGCGCA
GAGACTGACCAACACCAACCTTCTGTTCGTGGTGGCGGAGAAGCCGCTGTGCAGCCAGTGCGAG
GTCGGCCGGCTGCTACAAAAGGAGACACACTCGGACGGCCCGGAGCAGTGTGAGCTGGTGCAGA
GACCGCGATACCGAAGAGGCCCGCACATCTGTTTTGACTACAATGCGACGGAAGATACCTCAGA
CTGTGGCCGCGGAGCCTCCTTCCCTCCGTCGCTGGGCGTCTTGGTTTCCCTGCAGCTGTTGCTC
CTCCTAGGCCTGCCACCTCGGCCGCAGCCTCAAATCCATTCCTTCGCTGCCTCTCGCCGCCTCT
GAACTACCCACACACACACATCATAGCCCCCACCCCCACCCCGCCTTGGCCTCCTAGCCTTTTC
GCTCACCCTCCCATGCCACATTCCCCAATCTAGATCCTTGGCCAGTCTCTCCTGAAGGAACTGG
GCCCCTTCCCCGGGGCCTGTGCCTTGGGGCAGGGGAGCCCCAAAGTAAGGTGCCATGGTGTTTG
GCACTCAAGATTTATCTCACCCTTGAACTGTCCAAGTGCCCACAGTCCCTGGACTCACCCCTGT
GGGTTGGGACAGGAGGCCACTAGTACCGATGCCAAACCAGGCCTTCACCAACCCACCTGCCTGG
AGATTTTCTCTATGTAGGCAACCCTGCCACTGCTGGGCGCCTCTAACTGGCCCTTTGGCCCCAC
CCAGGCCCAAACTTACCTTCTCTGGGGAAAAAACTAGGAGAGATGGTAGTGGTGAGAGAGATTC
TGGGGGCACCCCTTCCCCATAGGCCTCGGGCCGTTCCAGGCTACACCACAAACCCACACCTCGG
CCTTGCAGGTATCAGGACAGCCTCACGATGACATCAGCTTAGGCACACCCCACAGACACCTGGA
CCTCAGAGAGCAGAAACTGGACTCTCACTAGACATGCCCGAGAGGGAACACACAAACAGACACA
CACCATGGGGGACCCACAAAGCCTTACACAGGGCGAGAGGTCAGTGAAGGGGCTGACCTGTGTG
TTCCTTCTCCGCTCACCTCTGCCTCCACTCTGAGATGCAGCCTGGCAGGCCCTCCCATCTCTAG
AACTGAATGTCAGACCGTGCCAAATGCTAGGGGAAGGCCTCTGTTTCGCCCCTAGCCACCAGTG
TCCCCAAATGCCCCTCACCCTGCCAGGTGCTCATTGTAACCATTGCTCACTAGTGTCAGGCCCC
TAGTAGGACCACACGTCACTGCCTGAACCCCTTTGGCAGAAGAACCCCGCCAGACATTGTACTT
TGCCTTAGCAGGGGTGACTTGGTCTCTCCTGGCTGGGCCATCCCATCCCCAATCTGGTTCTTAC
ATACTCAGGCCTAATTCCCTCTTCACACACACACACACACACACACACACACACACACACACAC
ACACAGTCCCTGCCCCTAGGAGGCCATATTGCCCCTCCCTTGCTGAACACACACTTGCACCAAG
CACATGTGTAGTCAACCATACTGCACACACAGAGGCTGGGCCTGGGACACATCTCTTCACACCA
TTCATTCTGTCATTTCTCCCAAAGGCATCGTAACCTGGGGGCCAGGCGGGGACTGAGGGCAGGG
TGGGGGGGTGTGTGGCCATGAGGCTCAGATGGACTGGGAGGAGGGTGGGAGGGTGGTACATTAA
TTAATGGCTCCGTTAATTAATGTCATGTTGCGTGTTGCTTTCTCAGTGTGTGTATGGTCCATGC
CCAATGCTGGTGGCAGGGTGGGTGTCCATGATGTGTGCCCAGCCTGGATGTCAGCTGTGTCCTG
TGGGGGCGTGTGTGTAACTGTAGTGTAGTCAGGTGCTCAACGGAGAATACAAACGAAAAAAGAA
ACAAACGTATACAGAAAAATAAATATATATTTTAAGTTTAAAAAAACAAACGGAACCAGACAAA
ACAATTCCCATCAGGTAGTTGTCCACCCCCCCAGCTGGGTTCAATCCTCTCATCACACACCTGA
CCTAGCTGTCCCCTCACCATGGGCTGGGGGACTTGGGGGCCATTTCCTTTGCCCCGTTTTTTGT
TTTGTTTTTTTTTTGTTGTTGTTTTGTTTTGTTTTGGTTGTTATTCTATTTTGTACAGACAAGT
TGGGAAAACAACAGCGACAAAAAAAAAGTCGAGAAACTTTGTAAAATATTGTGTGTGTGATTCC
TTGTAAAATATTTTCAAATGGTTTATTACAGAAGATCAGTTATTAAATAATGTTCATATTTTCA
CTTCAAA

hide sequence

RefSeq Acc Id:

XM_006243737 ⟹ XP_006243799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	116,950,860 - 117,082,159 (+)	NCBI
mRatBN7.2	8	108,072,208 - 108,203,516 (+)	NCBI
Rnor_6.0	8	116,154,661 - 116,285,643 (+)	NCBI
Rnor_5.0	8	115,510,729 - 115,641,903 (+)	NCBI

Sequence:

show sequence

CGCCCCCCCCTCCATCCCGCCGCCGCCGCCGCCGTCCCCCCTCCCTCCCCGCGGCGCCGCATCT
TGAATGGAAACATGGCGGTGCCGGCTCGGACCTGCGGCGCTTCTTGGCCCGGCCCGGTGCGGAC
CGCTCGCCCCTGGCCCGGTCGCGGTCCCCGGCCCTGCCCTGACCCCCGGGGCCCAGCGTCCGGG
CCCGCACGCCCGCTCTTGCTACTGCTGCCGCCTCTGCTGCTTTTACCGCTGCTCACCGCCCCCG
GCGCCTCTGCCTACAGCTTCCCCCAGCAGCACACGATGCAGCACTGGGCCCGGCGCCTGGAGCA
GGAGATTGACGGTGTGATGCGGATTTTTGGAGGCGTGCAGCAGCTCCGAGAGATCTACAAGGAC
AATCGGAACCTGTTTGATGTGCAGGAGAATGAACCACAGAAACTAGTGGAGAAGGTGGCAGGGG
ACATTGAGAGCCTGCTGGACAGAAAGGTCCAGGCCTTGAAGAGACTGGCTGACGCTGCAGAGAA
TTTCCAGAAAGCCCACCGCTGGCAAGACAACATCAAGGAGGAAGACATCATGTACTATGACGCC
AAGGCTGACGCCGAGCTGGATGATCCTGAGAGTGAGGATATGGAGAGGGGATCCAAGACCAGCG
CCTTAAGGCTGGACTTCATCGAGGAGCCAAACTTCAAGAACAAAGTCAACTATTCATACACGGC
GGTGCAGATCCCCACAGATATCTACAAAGGCTCTACCGTCATCCTCAATGAGCTTAACTGGACG
GAGGCCCTGGAGAATGTCTTCATTGAGAACCGTAGGCAAGACCCTACACTGTTGTGGCAAGTCT
TCGGCAGTGCCACGGGAGTCACCCGCTATTACCCAGCCACACCGTGGCGAGCCCCCAAGAAGAT
TGACCTGTACGATGTCAGAAGACGACCCTGGTATATACAGGGGGCCTCATCACCCAAGGACATG
GTCATCATTGTGGATGTGAGTGGCAGTGTGAGCGGCCTGACGCTGAAGCTGATGAAGACGTCTG
TCTGTGAGATGCTAGACACACTCTCCGATGATGACTATGTGAATGTGGCCTCATTCAACGAGAA
GGCGCAGCCTGTGTCTTGCTTCACACACCTGGTGCAGGCCAATGTGCGGAACAAGAAGGTGTTC
AAGGAAGCTGTGCAGGGCATGGTGGCCAAGGGCACCACAGGCTACAAGGCTGGCTTTGAGTATG
CCTTTGACCAGCTACAGAATTCCAACATCACCCGTGCTAACTGCAATAAGATGATCATGATGTT
CACGGACGGGGGAGAGGATCGCGTGCAGGACGTCTTTGAAAAGTATAATTGGCCCAATCGGACG
GTACGCGTCTTCACGTTCTCCGTAGGACAGCATAACTATGATGTCACACCCCTGCAGTGGATGG
CTTGTACTAACAAAGGTTACTATTTTGAGATCCCTTCCATCGGAGCCATCCGCATCAACACACA
GGAATACCTGGATGTGCTGGGTAGGCCCATGGTCCTGGCAGGCAAGGACGCCAAGCAAGTGCAA
TGGACAAACGTGTATGAAGATGCGCTGGGGCTGGGGTTGGTGGTAACAGGGACTCTCCCTGTTT
TCAACCTGACACAGGATGGCCCTGGGGAAAAGAAGAACCAGCTAATCCTGGGTGTCATGGGCAT
AGATGTGGCCCTGAATGACATCAAAAGGCTGACTCCCAACTACACACTTGGCGCCAATGGCTAC
GTGTTCGCCATCGACCTGAATGGCTATGTGTTGCTACATCCCAATCTCAAGCCCCAGACTACCA
ACTTCCGGGAGCCTGTGACCTTGGACTTCCTGGATGCAGAGCTGGAAGATGAGAACAAGGAGGA
GATCCGTCGTAGTATGATTGACGGAGACAAAGGCCACAAGCAGATCAGAACCTTGGTCAAATCC
CTGGATGAGAGGTACATAGATGAAGTGATTCGGAACTACACCTGGGTGCCTATAAGGAGTACCA
ACTACAGCCTGGGGCTGGTGCTCCCACCCTACAGCACCTACTACCTCCAAGCCAACCTCAGCGA
CCAGATCCTGCAGGTCAAGTATTTTGAGTTCCTGCTCCCCAGCAGCTTTGAGTCTGAAGGACAT
GTTTTCATTGCTCCCAGAGAGTATTGCAAGGATTTGAATGCCTCAGACAACAACACCGAGTTCC
TGAAAAACTTCATTGAGCTCATGGAGAAAGTGACTCCGGACTCCAAGCAGTGCAATAACTTCCT
TCTGCATAACTTGATTTTGGACACGGGCATTACGCAGCAGTTAGTGGAACGCGTCTGGCGGGAC
CAAGATCTCAACACGTACAGCCTGCTAGCTGTATTTGCTGCCACTGACGGTGGCATCACACGTG
TCTTCCCGAACAAGGCAGCTGAAGACTGGACAGAAAACCCTGAACCCTTCAATGCCAGCTTCTA
CCGCCGCAGCCTGGATAACCGTGGTTATATCTTCAAGCCCCCGCACCAGGACTCCCTGTTAAGG
CCACTGGAGCTGGAGAATGACACAGTAGGCGTCCTCGTCAGCACAGCTGTAGAGCTCAGTCTGG
GTCGCCGCACACTGAGGCCAGCAGTGGTGGGTGTCAAACTGGACCTAGAGGCTTGGGCTGAAAA
GTTCAAGGTGCTTGCCAGCAACCGTACCCATCAGGACCAACCTCAGAAGTGCGGCCCCAGCAGC
CACTGTGAGATGGACTGCGAGGTAAACAACGAGGACCTACTCTGTGTCCTCATTGATGACGGGG
GATTCCTGGTGCTGTCAAACCAGAACCACCAGTGGGACCAGGTTGGCAGATTCTTCAGTGAGGT
GGATGCCAACCTGATGCTGGCACTGTACAATAACTCCTTCTACACCAGAAAGGAGTCCTATGAC
TATCAGGCAGCTTGTGCCCCTCAGCCTCCTGGCAACCTGGGTGCTGCACCCAGGGGTGTCTTTG
TGCCCACCATTGCAGATTTCCTTAACTTGGCCTGGTGGACCTCTGCTGCCGCCTGGTCCTTATT
CCAGCAACTACTTTATGGTCTCATCTATCACAGCTGGTTCCAGGCAGACCCGGCAGAAGCCGAG
GGCAGCCCCGAGACGCGCGAGAGCAGCTGCGTCATGAAACAAACCCAGTACTACTTCGGCTCGG
TGAACGCGTCCTATAACGCCATCATCGACTGCGGAAACTGCAGCAGGCTGTTCCACGCGCAGAG
ACTGACCAACACCAACCTTCTGTTCGTGGTGGCGGAGAAGCCGCTGTGCAGCCAGTGCGAGGTC
GGCCGGCTGCTACAAAAGGAGACACACTCGGACGGCCCGGAGCAGTGTGAGCTGGTGCAGAGAC
CGCGATACCGAAGAGGCCCGCACATCTGTTTTGACTACAATGCGACGGAAGATACCTCAGACTG
TGGCCGCGGAGCCTCCTTCCCTCCGTCGCTGGGCGTCTTGGTTTCCCTGCAGCTGTTGCTCCTC
CTAGGCCTGCCACCTCGGCCGCAGCCTCAAATCCATTCCTTCGCTGCCTCTCGCCGCCTCTGAA
CTACCCACACACACACATCATAGCCCCCACCCCCACCCCGCCTTGGCCTCCTAGCCTTTTCGCT
CACCCTCCCATGCCACATTCCCCAATCTAGATCCTTGGCCAGTCTCTCCTGAAGGAACTGGGCC
CCTTCCCCGGGGCCTGTGCCTTGGGGCAGGGGAGCCCCAAAGTAAGGTGCCATGGTGTTTGGCA
CTCAAGATTTATCTCACCCTTGAACTGTCCAAGTGCCCACAGTCCCTGGACTCACCCCTGTGGG
TTGGGACAGGAGGCCACTAGTACCGATGCCAAACCAGGCCTTCACCAACCCACCTGCCTGGAGA
TTTTCTCTATGTAGGCAACCCTGCCACTGCTGGGCGCCTCTAACTGGCCCTTTGGCCCCACCCA
GGCCCAAACTTACCTTCTCTGGGGAAAAAACTAGGAGAGATGGTAGTGGTGAGAGAGATTCTGG
GGGCACCCCTTCCCCATAGGCCTCGGGCCGTTCCAGGCTACACCACAAACCCACACCTCGGCCT
TGCAGGTATCAGGACAGCCTCACGATGACATCAGCTTAGGCACACCCCACAGACACCTGGACCT
CAGAGAGCAGAAACTGGACTCTCACTAGACATGCCCGAGAGGGAACACACAAACAGACACACAC
CATGGGGGACCCACAAAGCCTTACACAGGGCGAGAGGTCAGTGAAGGGGCTGACCTGTGTGTTC
CTTCTCCGCTCACCTCTGCCTCCACTCTGAGATGCAGCCTGGCAGGCCCTCCCATCTCTAGAAC
TGAATGTCAGACCGTGCCAAATGCTAGGGGAAGGCCTCTGTTTCGCCCCTAGCCACCAGTGTCC
CCAAATGCCCCTCACCCTGCCAGGTGCTCATTGTAACCATTGCTCACTAGTGTCAGGCCCCTAG
TAGGACCACACGTCACTGCCTGAACCCCTTTGGCAGAAGAACCCCGCCAGACATTGTACTTTGC
CTTAGCAGGGGTGACTTGGTCTCTCCTGGCTGGGCCATCCCATCCCCAATCTGGTTCTTACATA
CTCAGGCCTAATTCCCTCTTCACACACACACACACACACACACACACACACACACACACACACA
CAGTCCCTGCCCCTAGGAGGCCATATTGCCCCTCCCTTGCTGAACACACACTTGCACCAAGCAC
ATGTGTAGTCAACCATACTGCACACACAGAGGCTGGGCCTGGGACACATCTCTTCACACCATTC
ATTCTGTCATTTCTCCCAAAGGCATCGTAACCTGGGGGCCAGGCGGGGACTGAGGGCAGGGTGG
GGGGGTGTGTGGCCATGAGGCTCAGATGGACTGGGAGGAGGGTGGGAGGGTGGTACATTAATTA
ATGGCTCCGTTAATTAATGTCATGTTGCGTGTTGCTTTCTCAGTGTGTGTATGGTCCATGCCCA
ATGCTGGTGGCAGGGTGGGTGTCCATGATGTGTGCCCAGCCTGGATGTCAGCTGTGTCCTGTGG
GGGCGTGTGTGTAACTGTAGTGTAGTCAGGTGCTCAACGGAGAATACAAACGAAAAAAGAAACA
AACGTATACAGAAAAATAAATATATATTTTAAGTTTAAAAAAACAAACGGAACCAGACAAAACA
ATTCCCATCAGGTAGTTGTCCACCCCCCCAGCTGGGTTCAATCCTCTCATCACACACCTGACCT
AGCTGTCCCCTCACCATGGGCTGGGGGACTTGGGGGCCATTTCCTTTGCCCCGTTTTTTGTTTT
GTTTTTTTTTTGTTGTTGTTTTGTTTTGTTTTGGTTGTTATTCTATTTTGTACAGACAAGTTGG
GAAAACAACAGCGACAAAAAAAAAGTCGAGAAACTTTGTAAAATATTGTGTGTGTGATTCCTTG
TAAAATATTTTCAAATGGTTTATTACAGAAGATCAGTTATTAAATAATGTTCATATTTTCACTT
CAAA

hide sequence

RefSeq Acc Id:

XM_063265241 ⟹ XP_063121311

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	116,950,860 - 117,082,159 (+)	NCBI

RefSeq Acc Id:

XM_063265242 ⟹ XP_063121312

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	116,950,860 - 117,082,159 (+)	NCBI

RefSeq Acc Id:

XM_063265243 ⟹ XP_063121313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	116,950,860 - 117,082,159 (+)	NCBI

RefSeq Acc Id:

XM_063265244 ⟹ XP_063121314

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	116,950,860 - 117,082,159 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001420187	(Get FASTA)	NCBI Sequence Viewer
	NP_783182	(Get FASTA)	NCBI Sequence Viewer
	XP_006243797	(Get FASTA)	NCBI Sequence Viewer
	XP_006243798	(Get FASTA)	NCBI Sequence Viewer
	XP_006243799	(Get FASTA)	NCBI Sequence Viewer
	XP_063121311	(Get FASTA)	NCBI Sequence Viewer
	XP_063121312	(Get FASTA)	NCBI Sequence Viewer
	XP_063121313	(Get FASTA)	NCBI Sequence Viewer
	XP_063121314	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAO14653	(Get FASTA)	NCBI Sequence Viewer
	EDL77256	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021216
	ENSRNOP00000071469
GenBank Protein	Q8CFG6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_783182 ⟸ NM_175592
- Peptide Label:	precursor
- UniProtKB:	Q8CFG6 (UniProtKB/Swiss-Prot), A6I2X1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVPARTCGASWPGPVRTARPWPGRGPRPCPDPRGPASGPARPLLLLLPPLLLLPLLTAPGASA YSFPQQHTMQHWARRLEQEIDGVMRIFGGVQQLREIYKDNRNLFDVQENEPQKLVEKVAGDIES LLDRKVQALKRLADAAENFQKAHRWQDNIKEEDIMYYDAKADAELDDPESEDMERGSKTSALRL DFIEEPNFKNKVNYSYTAVQIPTDIYKGSTVILNELNWTEALENVFIENRRQDPTLLWQVFGSA TGVTRYYPATPWRAPKKIDLYDVRRRPWYIQGASSPKDMVIIVDVSGSVSGLTLKLMKTSVCEM LDTLSDDDYVNVASFNEKAQPVSCFTHLVQANVRNKKVFKEAVQGMVAKGTTGYKAGFEYAFDQ LQNSNITRANCNKMIMMFTDGGEDRVQDVFEKYNWPNRTVRVFTFSVGQHNYDVTPLQWMACTN KGYYFEIPSIGAIRINTQEYLDVLGRPMVLAGKDAKQVQWTNVYEDALGLGLVVTGTLPVFNLT QDGPGDKKNQLILGVMGIDVALNDIKRLTPNYTLGANGYVFAIDLNGYVLLHPNLKPQITNFRE PVTLDFLDAELEDENKEEIRRSMIDGDKGHKQIRTLVKSLDERYIDEVIRNYTWVPIRSTNYSL GLVLPPYSTYYLQANLSDQILQVKLPISKLKDFEFLLPSSFESEGHVFIAPREYCKDLNASDNN TEFLKNFIELMEKVTPDSKQCNNFLLHNLILDTGITQQLVERVWRDQDLNTYSLLAVFAATDGG ITRVFPNKAAEDWTENPEPFNASFYRRSLDNRGYIFKPPHQDSLLRPLELENDTVGVLVSTAVE LSLGRRTLRPAVVGVKLDLEAWAEKFKVLASNRTHQDQPQKQCGPSSHCEMDCEVNNEDLLCVL IDDGGFLVLSNQNHQWDQVGRFFSEVDANLMLALYNNSFYTRKESYDYQAACAPQPPGNLGAAP RGVFVPTIADFLNLAWWTSAAAWSLFQQLLYGLIYHSWFQADPAEAEGSPETRESSCVMKQTQY YFGSVNASYNAIIDCGNCSRLFHAQRLTNTNLLFVVAEKPLCSQCEVGRLLQKETHCPADGPEQ CELVQRPRYRTGPHICFDYNATEDTSDCGRGASFPPSLGVLVSLQLLLLLGLPPRPQPQIHSFT PSRRL hide sequence

RefSeq Acc Id:	XP_006243797 ⟸ XM_006243735
- Peptide Label:	isoform X3
- UniProtKB:	Q8CFG6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAVPARTCGASWPGPVRTARPWPGRGPRPCPDPRGPASGPARPLLLLLPPLLLLPLLTAPGASA YSFPQQHTMQHWARRLEQEIDGVMRIFGGVQQLREIYKDNRNLFDVQENEPQKLVEKVAGDIES LLDRKVQALKRLADAAENFQKAHRWQDNIKEEDIMYYDAKADAELDDPESEDMERGSKTSALRL DFIEEPNFKNKVNYSYTAVQIPTDIYKGSTVILNELNWTEALENVFIENRRQDPTLLWQVFGSA TGVTRYYPATPWRAPKKIDLYDVRRRPWYIQGASSPKDMVIIVDVSGSVSGLTLKLMKTSVCEM LDTLSDDDYVNVASFNEKAQPVSCFTHLVQANVRNKKVFKEAVQGMVAKGTTGYKAGFEYAFDQ LQNSNITRANCNKMIMMFTDGGEDRVQDVFEKYNWPNRTVRVFTFSVGQHNYDVTPLQWMACTN KGYYFEIPSIGAIRINTQEYLDVLGRPMVLAGKDAKQVQWTNVYEDALGLGLVVTGTLPVFNLT QDGPGEKKNQLILGVMGIDVALNDIKRLTPNYTLGANGYVFAIDLNGYVLLHPNLKPQTTNFRE PVTLDFLDAELEDENKEEIRRSMIDGDKGHKQIRTLVKSLDERYIDEVIRNYTWVPIRSTNYSL GLVLPPYSTYYLQANLSDQILQVKLPISKLKDFEFLLPSSFESEGHVFIAPREYCKDLNASDNN TEFLKNFIELMEKVTPDSKQCNNFLLHNLILDTGITQQLVERVWRDQDLNTYSLLAVFAATDGG ITRVFPNKAAEDWTENPEPFNASFYRRSLDNRGYIFKPPHQDSLLRPLELENDTVGVLVSTAVE LSLGRRTLRPAVVGVKLDLEAWAEKFKVLASNRTHQDQPQKCGPSSHCEMDCEVNNEDLLCVLI DDGGFLVLSNQNHQWDQVGRFFSEVDANLMLALYNNSFYTRKESYDYQAACAPQPPGNLGAAPR GVFVPTIADFLNLAWWTSAAAWSLFQQLLYGLIYHSWFQADPAEAEGSPETRESSCVMKQTQYY FGSVNASYNAIIDCGNCSRLFHAQRLTNTNLLFVVAEKPLCSQCEVGRLLQKETHSDGPEQCEL VQRPRYRRGPHICFDYNATEDTSDCGRGASFPPSLGVLVSLQLLLLLGLPPRPQPQIHSFAASR RL hide sequence

RefSeq Acc Id:	XP_006243798 ⟸ XM_006243736
- Peptide Label:	isoform X6
- UniProtKB:	Q8CFG6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAVPARTCGASWPGPVRTARPWPGRGPRPCPDPRGPASGPARPLLLLLPPLLLLPLLTAPGASA YSFPQQHTMQHWARRLEQEIDGVMRIFGGVQQLREIYKDNRNLFDVQENEPQKLVEKVAGDIES LLDRKVQALKRLADAAENFQKAHRWQDNIKEEDIMYYDAKADAELDDPESEDMERGSKTSALRL DFIEEPNFKNKVNYSYTAVQIPTDIYKGSTVILNELNWTEALENVFIENRRQDPTLLWQVFGSA TGVTRYYPATPWRAPKKIDLYDVRRRPWYIQGASSPKDMVIIVDVSGSVSGLTLKLMKTSVCEM LDTLSDDDYVNVASFNEKAQPVSCFTHLVQANVRNKKVFKEAVQGMVAKGTTGYKAGFEYAFDQ LQNSNITRANCNKMIMMFTDGGEDRVQDVFEKYNWPNRTVRVFTFSVGQHNYDVTPLQWMACTN KGYYFEIPSIGAIRINTQEYLDVLGRPMVLAGKDAKQVQWTNVYEDALGLGLVVTGTLPVFNLT QDGPGEKKNQLILGVMGIDVALNDIKRLTPNYTLGANGYVFAIDLNGYVLLHPNLKPQTTNFRE PVTLDFLDAELEDENKEEIRRSMIDGDKGHKQIRTLVKSLDERYIDEVIRNYTWVPIRSTNYSL GLVLPPYSTYYLQANLSDQILQVKYFEFLLPSSFESEGHVFIAPREYCKDLNASDNNTEFLKNF IELMEKVTPDSKQCNNFLLHNLILDTGITQQLVERVWRDQDLNTYSLLAVFAATDGGITRVFPN KAAEDWTENPEPFNASFYRRSLDNRGYIFKPPHQDSLLRPLELENDTVGVLVSTAVELSLGRRT LRPAVVGVKLDLEAWAEKFKVLASNRTHQDQPQKQCGPSSHCEMDCEVNNEDLLCVLIDDGGFL VLSNQNHQWDQVGRFFSEVDANLMLALYNNSFYTRKESYDYQAACAPQPPGNLGAAPRGVFVPT IADFLNLAWWTSAAAWSLFQQLLYGLIYHSWFQADPAEAEGSPETRESSCVMKQTQYYFGSVNA SYNAIIDCGNCSRLFHAQRLTNTNLLFVVAEKPLCSQCEVGRLLQKETHSDGPEQCELVQRPRY RRGPHICFDYNATEDTSDCGRGASFPPSLGVLVSLQLLLLLGLPPRPQPQIHSFAASRRL hide sequence

RefSeq Acc Id:

XP_006243799 ⟸ XM_006243737

- Peptide Label:

isoform X7

- Sequence:

show sequence

MAVPARTCGASWPGPVRTARPWPGRGPRPCPDPRGPASGPARPLLLLLPPLLLLPLLTAPGASA
YSFPQQHTMQHWARRLEQEIDGVMRIFGGVQQLREIYKDNRNLFDVQENEPQKLVEKVAGDIES
LLDRKVQALKRLADAAENFQKAHRWQDNIKEEDIMYYDAKADAELDDPESEDMERGSKTSALRL
DFIEEPNFKNKVNYSYTAVQIPTDIYKGSTVILNELNWTEALENVFIENRRQDPTLLWQVFGSA
TGVTRYYPATPWRAPKKIDLYDVRRRPWYIQGASSPKDMVIIVDVSGSVSGLTLKLMKTSVCEM
LDTLSDDDYVNVASFNEKAQPVSCFTHLVQANVRNKKVFKEAVQGMVAKGTTGYKAGFEYAFDQ
LQNSNITRANCNKMIMMFTDGGEDRVQDVFEKYNWPNRTVRVFTFSVGQHNYDVTPLQWMACTN
KGYYFEIPSIGAIRINTQEYLDVLGRPMVLAGKDAKQVQWTNVYEDALGLGLVVTGTLPVFNLT
QDGPGEKKNQLILGVMGIDVALNDIKRLTPNYTLGANGYVFAIDLNGYVLLHPNLKPQTTNFRE
PVTLDFLDAELEDENKEEIRRSMIDGDKGHKQIRTLVKSLDERYIDEVIRNYTWVPIRSTNYSL
GLVLPPYSTYYLQANLSDQILQVKYFEFLLPSSFESEGHVFIAPREYCKDLNASDNNTEFLKNF
IELMEKVTPDSKQCNNFLLHNLILDTGITQQLVERVWRDQDLNTYSLLAVFAATDGGITRVFPN
KAAEDWTENPEPFNASFYRRSLDNRGYIFKPPHQDSLLRPLELENDTVGVLVSTAVELSLGRRT
LRPAVVGVKLDLEAWAEKFKVLASNRTHQDQPQKCGPSSHCEMDCEVNNEDLLCVLIDDGGFLV
LSNQNHQWDQVGRFFSEVDANLMLALYNNSFYTRKESYDYQAACAPQPPGNLGAAPRGVFVPTI
ADFLNLAWWTSAAAWSLFQQLLYGLIYHSWFQADPAEAEGSPETRESSCVMKQTQYYFGSVNAS
YNAIIDCGNCSRLFHAQRLTNTNLLFVVAEKPLCSQCEVGRLLQKETHSDGPEQCELVQRPRYR
RGPHICFDYNATEDTSDCGRGASFPPSLGVLVSLQLLLLLGLPPRPQPQIHSFAASRRL

hide sequence

Ensembl Acc Id:

ENSRNOP00000021216 ⟸ ENSRNOT00000021218

Ensembl Acc Id:

ENSRNOP00000071469 ⟸ ENSRNOT00000081242

RefSeq Acc Id:	XP_063121311 ⟸ XM_063265241
- Peptide Label:	isoform X1
- UniProtKB:	Q8CFG6 (UniProtKB/Swiss-Prot), A6I2X1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121312 ⟸ XM_063265242
- Peptide Label:	isoform X2
- UniProtKB:	Q8CFG6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063121313 ⟸ XM_063265243
- Peptide Label:	isoform X4
- UniProtKB:	Q8CFG6 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063121314 ⟸ XM_063265244
- Peptide Label:	isoform X5
- UniProtKB:	Q8CFG6 (UniProtKB/Swiss-Prot)

Protein Domains

Cache VWFA

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8CFG6-F1-model_v2	AlphaFold	Q8CFG6	1-1157	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:631360	AgrOrtholog
BioCyc Gene	G2FUF-29205	BioCyc
Ensembl Genes	ENSRNOG00000015835	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000021218	ENTREZGENE
	ENSRNOT00000081242	ENTREZGENE
Gene3D-CATH	3.40.50.410	UniProtKB/Swiss-Prot
	PAS domain	UniProtKB/Swiss-Prot
InterPro	Ca_channel_alpha-2/delta	UniProtKB/Swiss-Prot
	VDCC_a2/dsu	UniProtKB/Swiss-Prot
	VWA_N	UniProtKB/Swiss-Prot
	VWF_A	UniProtKB/Swiss-Prot
	vWFA_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:300992	UniProtKB/Swiss-Prot
NCBI Gene	300992	ENTREZGENE
PANTHER	VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-2	UniProtKB/Swiss-Prot
	VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED	UniProtKB/Swiss-Prot
Pfam	VGCC_alpha2	UniProtKB/Swiss-Prot
	VWA	UniProtKB/Swiss-Prot
	VWA_N	UniProtKB/Swiss-Prot
PhenoGen	Cacna2d2	PhenoGen
PROSITE	VWFA	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000015835	RatGTEx
SMART	VWA	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF53300	UniProtKB/Swiss-Prot
UniProt	A0A0G2K0J2_RAT	UniProtKB/TrEMBL
	A6I2X1	ENTREZGENE, UniProtKB/TrEMBL
	CA2D2_RAT	UniProtKB/Swiss-Prot
	F1M9X7_RAT	UniProtKB/TrEMBL
	Q8CFG6	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-11	Cacna2d2	calcium voltage-gated channel auxiliary subunit alpha2delta 2	Cacna2d2	calcium channel, voltage-dependent, alpha 2/delta subunit 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Cacna2d2	calcium channel, voltage-dependent, alpha 2/delta subunit 2		calcium channel, voltage dependent, alpha2/delta subunit 2	Name updated	1299863	APPROVED
2004-02-11	Slc1a7	calcium channel, voltage dependent, alpha2/delta subunit 2	Cacna2d2	calcium channel, voltage-dependent, alpha 2/delta subunit 2	Name updated to reflect Human and Mouse nomenclature	625702	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_regulation	expression is increased by IGF-1	632381

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)