Rpl13a (ribosomal protein L13A) - Rat Genome Database

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Gene: Rpl13a (ribosomal protein L13A) Rattus norvegicus
Analyze
Symbol: Rpl13a (Ensembl: Flt3lg)
Name: ribosomal protein L13A (Ensembl:Fms related receptor tyrosine kinase 3 ligand)
RGD ID: 628697
Description: Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Involved in cellular response to UV-B; cellular response to cAMP; and cellular response to gamma radiation. Located in ribosome. Part of cytosolic large ribosomal subunit. Orthologous to human RPL13A (ribosomal protein L13a); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aldehydo-D-glucose; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L13a; large ribosomal subunit protein uL13; neuroprotective protein 11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,746,223 - 104,748,975 (-)NCBIGRCr8
mRatBN7.2195,609,374 - 95,612,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,609,370 - 95,620,463 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,995,152 - 100,997,842 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,467,819 - 109,470,509 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,758,226 - 102,760,916 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,120,325 - 101,123,401 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,120,325 - 101,123,402 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,186,220 - 102,188,910 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,600,814 - 95,603,504 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,678,924 - 95,681,616 (-)NCBI
Celera189,868,177 - 89,870,867 (-)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3'-diindolylmethane  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
actinomycin D  (ISO)
aldehydo-D-glucose  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
cadmium atom  (ISO)
camptothecin  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
carbonyl cyanide p-trifluoromethoxyphenylhydrazone  (ISO)
chlorohydrocarbon  (EXP)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
clobetasol  (ISO)
clofibric acid  (EXP)
crocidolite asbestos  (ISO)
cylindrospermopsin  (ISO)
D-glucose  (EXP)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (EXP)
dorsomorphin  (ISO)
ethanol  (ISO)
Evodiamine  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
glucose  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
N-nitrosodiethylamine  (EXP)
nimesulide  (EXP)
nitrates  (ISO)
Nutlin-3  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
PhIP  (EXP)
picoxystrobin  (ISO)
propiconazole  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
triadimefon  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. A leucine zipper-like motif and a basic region-leucine zipper-like element in rat ribosomal protein L13a. Identification of the tum- transplantation antigen P198. Chan YL, etal., J Biol Chem 1994 Feb 25;269(8):5589-94.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. UVB and gamma-radiation induce the expression of mRNAs encoding the ribosomal subunit L13A in rat keratinocytes. Shahmolky N, etal., Photochem Photobiol. 1999 Sep;70(3):341-7.
Additional References at PubMed
PMID:12477932   PMID:12962325   PMID:14567916   PMID:15479637   PMID:16791210   PMID:17218275   PMID:18809582   PMID:19946888   PMID:20716364   PMID:21124846   PMID:21423176   PMID:21630459  
PMID:22658674   PMID:22871113   PMID:23071094   PMID:23460747   PMID:28192165   PMID:30053369  


Genomics

Comparative Map Data
Rpl13a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,746,223 - 104,748,975 (-)NCBIGRCr8
mRatBN7.2195,609,374 - 95,612,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,609,370 - 95,620,463 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,995,152 - 100,997,842 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,467,819 - 109,470,509 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,758,226 - 102,760,916 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,120,325 - 101,123,401 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,120,325 - 101,123,402 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,186,220 - 102,188,910 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,600,814 - 95,603,504 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,678,924 - 95,681,616 (-)NCBI
Celera189,868,177 - 89,870,867 (-)NCBICelera
Cytogenetic Map1q22NCBI
RPL13A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,487,608 - 49,492,308 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,487,510 - 49,493,057 (+)EnsemblGRCh38hg38GRCh38
GRCh371949,990,865 - 49,995,565 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,682,677 - 54,687,377 (+)NCBINCBI36Build 36hg18NCBI36
Build 341954,682,676 - 54,687,374NCBI
Celera1946,860,188 - 46,864,887 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,368,350 - 46,373,103 (+)NCBIHuRef
CHM1_11949,992,085 - 49,997,349 (+)NCBICHM1_1
T2T-CHM13v2.01952,487,574 - 52,492,273 (+)NCBIT2T-CHM13v2.0
Rpl13a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,774,987 - 44,778,169 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,774,982 - 44,778,185 (-)EnsemblGRCm39 Ensembl
GRCm38745,125,563 - 45,128,745 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,125,558 - 45,128,761 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,381,146 - 52,384,105 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,993,818 - 44,996,777 (-)NCBIMGSCv36mm8
Celera740,578,868 - 40,581,827 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.14NCBI
Rpl13a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,358,486 - 1,362,663 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,358,479 - 1,362,663 (-)NCBIChiLan1.0ChiLan1.0
RPL13A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,602,155 - 55,607,523 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,523,611 - 57,527,867 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,485,729 - 46,504,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,423,867 - 55,428,598 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,423,866 - 55,428,598 (+)Ensemblpanpan1.1panPan2
RPL13A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,010,190 - 107,014,267 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,010,190 - 107,014,267 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,593,464 - 106,597,541 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,530,251 - 107,534,330 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,530,251 - 107,534,330 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,203,301 - 107,207,380 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,845,354 - 106,849,436 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,686,472 - 107,690,551 (-)NCBIUU_Cfam_GSD_1.0
Rpl13a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,734,487 - 21,738,006 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,352,514 - 3,356,895 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,352,535 - 3,356,196 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL13A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,551,533 - 54,561,489 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,551,772 - 54,568,752 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,280,484 - 50,297,722 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL13A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,666,186 - 42,671,018 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607322,595,799 - 22,600,058 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl13a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,727,899 - 4,732,367 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,728,298 - 4,732,397 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpl13a
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:48
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000027976
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)194494440117601394Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)15034351099980958Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat

Markers in Region
RH134015  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 38 94 64 60 48 6 48 6 144 56 82 34 49 12

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_173340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU000472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC207277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC301871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X68282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000027976   ⟹   ENSRNOP00000027976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,609,370 - 95,612,459 (-)Ensembl
Rnor_6.0 Ensembl1101,120,325 - 101,123,402 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082283   ⟹   ENSRNOP00000073852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,615,057 - 95,620,243 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1101,121,040 - 101,123,398 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093210   ⟹   ENSRNOP00000076088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,609,761 - 95,620,243 (-)Ensembl
Rnor_6.0 Ensembl1101,120,692 - 101,123,399 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1101,121,014 - 101,121,821 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1101,120,711 - 101,122,240 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093443   ⟹   ENSRNOP00000090368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,613,528 - 95,620,320 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093498   ⟹   ENSRNOP00000076117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,613,525 - 95,620,463 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1101,120,778 - 101,123,375 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093559   ⟹   ENSRNOP00000076314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,609,761 - 95,620,243 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1101,122,650 - 101,123,397 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1101,121,562 - 101,122,298 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093729   ⟹   ENSRNOP00000076296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,615,057 - 95,620,463 (-)Ensembl
RefSeq Acc Id: NM_173340   ⟹   NP_775462
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,746,223 - 104,748,913 (-)NCBI
mRatBN7.2195,609,760 - 95,612,450 (-)NCBI
Rnor_6.01101,120,711 - 101,123,401 (-)NCBI
Rnor_5.01102,186,220 - 102,188,910 (-)NCBI
RGSC_v3.4195,600,814 - 95,603,504 (-)RGD
Celera189,868,177 - 89,870,867 (-)RGD
Sequence:
RefSeq Acc Id: XR_005487745
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,746,223 - 104,748,975 (-)NCBI
mRatBN7.2195,609,374 - 95,612,557 (-)NCBI
RefSeq Acc Id: NP_775462   ⟸   NM_173340
- UniProtKB: P35427 (UniProtKB/Swiss-Prot),   A6JAX5 (UniProtKB/TrEMBL),   B3SVE8 (UniProtKB/TrEMBL),   Q5RK10 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000076088   ⟸   ENSRNOT00000093210
Ensembl Acc Id: ENSRNOP00000027976   ⟸   ENSRNOT00000027976
Ensembl Acc Id: ENSRNOP00000076314   ⟸   ENSRNOT00000093559
Ensembl Acc Id: ENSRNOP00000076117   ⟸   ENSRNOT00000093498
Ensembl Acc Id: ENSRNOP00000076296   ⟸   ENSRNOT00000093729
Ensembl Acc Id: ENSRNOP00000073852   ⟸   ENSRNOT00000082283
Ensembl Acc Id: ENSRNOP00000090368   ⟸   ENSRNOT00000093443

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P35427-F1-model_v2 AlphaFold P35427 1-203 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690026
Promoter ID:EPDNEW_R550
Type:multiple initiation site
Name:Rpl13a_1
Description:ribosomal protein L13A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01101,123,409 - 101,123,469EPDNEW
RGD ID:13690030
Promoter ID:EPDNEW_R551
Type:single initiation site
Name:AC099450_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01101,131,287 - 101,131,347EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628697 AgrOrtholog
BioCyc Gene G2FUF-59719 BioCyc
Ensembl Genes ENSRNOG00000020618 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000062298 Ensembl
Ensembl Transcript ENSRNOT00000027976.7 UniProtKB/TrEMBL
  ENSRNOT00000082283.2 UniProtKB/TrEMBL
  ENSRNOT00000093210.2 UniProtKB/TrEMBL
  ENSRNOT00000093443.2 UniProtKB/TrEMBL
  ENSRNOT00000093498.2 UniProtKB/TrEMBL
  ENSRNOT00000093559.2 UniProtKB/TrEMBL
  ENSRNOT00000093729.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/TrEMBL
  3.90.1180.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.250.3250 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7301486 IMAGE-MGC_LOAD
InterPro 4_helix_cytokine-like_core UniProtKB/TrEMBL
  Flt3_lig UniProtKB/TrEMBL
  Ribosomal_L13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L13_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L13_euk/arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L13_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:317646 UniProtKB/TrEMBL
MGC_CLONE MGC:105295 IMAGE-MGC_LOAD
NCBI Gene 317646 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L13A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FMS-RELATED TYROSINE KINASE 3 LIGAND UniProtKB/TrEMBL
  PTHR11032 UniProtKB/TrEMBL
  PTHR11545 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Flt3_lig UniProtKB/TrEMBL
  Ribosomal_L13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl13a PhenoGen
PROSITE RIBOSOMAL_L13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020618 RatGTEx
  ENSRNOG00000062298 RatGTEx
Superfamily-SCOP SSF47266 UniProtKB/TrEMBL
  SSF52161 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K6K8_RAT UniProtKB/TrEMBL
  A0A1W2Q602_RAT UniProtKB/TrEMBL
  A0A1W2Q636_RAT UniProtKB/TrEMBL
  A0A1W2Q6J3_RAT UniProtKB/TrEMBL
  A0A1W2Q6L2_RAT UniProtKB/TrEMBL
  A0A8I6A9D9_RAT UniProtKB/TrEMBL
  A6JAX5 ENTREZGENE
  A6JAX7_RAT UniProtKB/TrEMBL
  B3SVE8 ENTREZGENE, UniProtKB/TrEMBL
  P35427 ENTREZGENE
  Q5RK10 ENTREZGENE, UniProtKB/TrEMBL
  RL13A_RAT UniProtKB/Swiss-Prot
UniProt Secondary A6JAX5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Rpl13a  ribosomal protein L13A      Symbol and Name status set to approved 1299863 APPROVED
2003-02-27 Rpl13a  ribosomal protein L13A      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains an N-terminal leucine zipper-like motif and a potential C-terminal basic region-leucine zipper element 632924