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Gene: Cttnbp2 (cortactin binding protein 2) Rattus norvegicus

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Symbol:

Cttnbp2

Name:

cortactin binding protein 2

RGD ID:

628691

Description:

Enables SH3 domain binding activity. Involved in regulation of modification of postsynaptic actin cytoskeleton. Located in synaptic vesicle. Is active in glutamatergic synapse. Orthologous to human CTTNBP2 (cortactin binding protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

brain specific cortactin-binding protein CBP90; Cbp90; cortactin-binding protein 2; Cortbp2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CTTNBP2 (cortactin binding protein 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Cttnbp2 (cortactin binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cttnbp2 (cortactin binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CTTNBP2 (cortactin binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CTTNBP2 (cortactin binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cttnbp2 (cortactin binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CTTNBP2 (cortactin binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CTTNBP2 (cortactin binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cttnbp2 (cortactin binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cttnbp2 (cortactin binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	IL15 (interleukin 15)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CTTNBP2 (cortactin binding protein 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cttnbp2 (cortactin binding protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cttnbp2 (cortactin binding protein 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG10915	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	cttnbp2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	47,766,867 - 47,930,598 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	47,766,870 - 47,930,540 (-)	Ensembl				GRCr8
mRatBN7.2	4	46,800,975 - 46,964,681 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	46,800,981 - 46,964,631 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	51,794,547 - 51,957,758 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	47,715,681 - 47,878,895 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	46,139,573 - 46,302,508 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	4	49,537,427 - 49,700,371 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	4	46,970,245 - 47,133,443 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	4	47,544,840 - 47,707,764 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	4	47,345,291 - 47,507,552 (-)	NCBI		F344_StmMcwi
Rnor_6.0	4	42,932,897 - 43,096,454 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	42,932,903 - 43,096,399 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	42,516,933 - 42,680,639 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	44,114,097 - 44,277,748 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	42,060,024 - 42,223,096 (-)	NCBI		Celera
RGSC_v3.1	4	44,402,924 - 44,507,501 (-)	NCBI
Cytogenetic Map	4	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Myocardial Ischemia (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

4,4'-sulfonyldiphenol (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

Butylbenzyl phthalate (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

choline (ISO)

cisplatin (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

dioxygen (ISO)

folic acid (ISO)

FR900359 (ISO)

inulin (ISO)

L-methionine (ISO)

linsidomine (EXP)

maneb (ISO)

methoxychlor (EXP)

miconazole (ISO)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

poly(I:C) (EXP)

quercetin (ISO)

resveratrol (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of modification of postsynaptic actin cytoskeleton (IDA,IMP)

regulation of synapse organization (IBA,IDA,IMP)

Cellular Component

cell cortex (IEA)

dendritic spine (IEA,ISO,ISS)

FAR/SIN/STRIPAK complex (IEA,ISO,ISS)

glutamatergic synapse (IBA,IDA,IEA,IMP,ISO)

postsynaptic actin cytoskeleton (IEA,ISO)

synaptic vesicle (IDA)

Molecular Function

protein binding (ISO)

SH3 domain binding (IPI)

References

References - curated

#	Reference Title	Reference Citation
1.	Cortactin-binding protein 2 modulates the mobility of cortactin and regulates dendritic spine formation and maintenance.	Chen YK and Hsueh YP, J Neurosci. 2012 Jan 18;32(3):1043-55. doi: 10.1523/JNEUROSCI.4405-11.2012.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Isolation and characterization of cortactin isoforms and a novel cortactin-binding protein, CBP90.	Ohoka Y and Takai Y, Genes Cells 1998 Sep;3(9):603-12.
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12917688	PMID:24928895	PMID:30053369	PMID:33168105

Genomics

Comparative Map Data

Cttnbp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	47,766,867 - 47,930,598 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	47,766,870 - 47,930,540 (-)	Ensembl				GRCr8
mRatBN7.2	4	46,800,975 - 46,964,681 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	46,800,981 - 46,964,631 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	51,794,547 - 51,957,758 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	47,715,681 - 47,878,895 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	46,139,573 - 46,302,508 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	4	49,537,427 - 49,700,371 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	4	46,970,245 - 47,133,443 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	4	47,544,840 - 47,707,764 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	4	47,345,291 - 47,507,552 (-)	NCBI		F344_StmMcwi
Rnor_6.0	4	42,932,897 - 43,096,454 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	42,932,903 - 43,096,399 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	42,516,933 - 42,680,639 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	44,114,097 - 44,277,748 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	42,060,024 - 42,223,096 (-)	NCBI		Celera
RGSC_v3.1	4	44,402,924 - 44,507,501 (-)	NCBI
Cytogenetic Map	4	q22	NCBI

CTTNBP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	117,710,651 - 117,873,441 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	117,710,651 - 117,874,139 (-)	Ensembl			hg38	GRCh38
GRCh37	7	117,350,705 - 117,513,495 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	117,137,941 - 117,300,797 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	116,944,658 - 117,107,512	NCBI
Celera	7	112,158,873 - 112,321,703 (-)	NCBI		Celera
Cytogenetic Map	7	q31.31	NCBI
HuRef	7	111,716,178 - 111,879,317 (-)	NCBI		HuRef
CHM1_1	7	117,284,164 - 117,447,123 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	119,026,042 - 119,189,157 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	116,746,141 - 116,908,979 (-)	NCBI

Cttnbp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	18,366,470 - 18,515,216 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	18,366,477 - 18,514,842 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	18,366,471 - 18,515,217 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	18,366,478 - 18,514,843 (-)	Ensembl			mm10	GRCm38
MGSCv37	6	18,316,477 - 18,464,825 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	18,316,472 - 18,464,869 (-)	NCBI		MGSCv36	mm8
Celera	6	18,439,130 - 18,588,875 (-)	NCBI		Celera
Cytogenetic Map	6	A2	NCBI
cM Map	6	8.12	NCBI

Cttnbp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	23,364,933 - 23,518,550 (-)	Ensembl
ChiLan1.0	NW_004955432	23,364,193 - 23,527,300 (-)	NCBI	ChiLan1.0	ChiLan1.0

CTTNBP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	154,535,118 - 154,697,070 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	6,545,375 - 6,707,311 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	109,675,275 - 109,837,178 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	122,369,733 - 122,531,604 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	122,370,616 - 122,520,397 (-)	Ensembl			panPan2	panpan1.1

CTTNBP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	56,514,114 - 56,665,437 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	56,514,381 - 56,657,958 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	55,909,374 - 56,053,305 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	56,553,566 - 56,624,854 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	14	56,592,187 - 56,735,831 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	56,273,353 - 56,344,334 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	56,644,651 - 56,715,671 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cttnbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	45,166,957 - 45,304,112 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936589	1,393,141 - 1,522,048 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936589	1,385,342 - 1,522,911 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTTNBP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	28,415,067 - 28,573,159 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	18	28,130,213 - 28,573,166 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	30,230,103 - 30,342,035 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CTTNBP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	86,376,005 - 86,539,662 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	86,376,011 - 86,527,223 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666042	17,181,391 - 17,344,562 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cttnbp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624827	1,481,082 - 1,655,871 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624827	1,481,082 - 1,656,279 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cttnbp2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	120,190,256 - 120,348,485 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cttnbp2
948 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	73
Count of miRNA genes:	60
Interacting mature miRNAs:	62
Transcripts:	ENSRNOT00000011135
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2302371	Stl22	Serum triglyceride level QTL 22	5.15		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	13080146	58080146	Rat
2303585	Bw86	Body weight QTL 86	4		body mass (VT:0001259)	body weight (CMO:0000012)	4	15644309	60644309	Rat
5685012	Bmd87	Bone mineral density QTL 87	5.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	4	35113290	80113290	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	41400577	86400577	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	44425024	89425024	Rat
8552906	Pigfal3	Plasma insulin-like growth factor 1 level QTL 3			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	11038706	56038706	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1331807	Rf31	Renal function QTL 31	2.988		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	4	40490442	75726188	Rat
6478766	Anxrr47	Anxiety related response QTL 47		0.09637	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	11038706	56038706	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5894575	57613242	Rat
6478769	Anxrr48	Anxiety related response QTL 48		0.02514	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	11038706	56038706	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
2313401	Anxrr27	Anxiety related response QTL 27			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	4	18900697	63900697	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	37269577	82269577	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
8694374	Bw155	Body weight QTL 155	3.39	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	4	11038706	56038706	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
61475	Aia2	Adjuvant induced arthritis QTL 2	5.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	40471453	75939996	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	41400603	86400603	Rat
61412	Pia2	Pristane induced arthritis QTL 2	3.9		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	4	22288453	63245191	Rat
8552807	Vie4	Viral induced encephalitis QTL 4	7.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	18900697	63900697	Rat
6478724	Anxrr35	Anxiety related response QTL 35		0.00449	defecation behavior trait (VT:0010462)	defecation measurement (CMO:0000997)	4	11038706	56038706	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	30448961	82336920	Rat
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	5889999	50889999	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
7387227	Uae40	Urinary albumin excretion QTL 40	2.9	0.0052	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	18913151	63913151	Rat
6909122	Insul22	Insulin level QTL 22	4.63		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	4	27862204	62997402	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	41400577	86400577	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	21925151	66925151	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	1	63900697	Rat
9590304	Scort17	Serum corticosterone level QTL 17	4.96	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	11038706	56038706	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat
11530004	Niddm71	Non-insulin dependent diabetes mellitus QTL 71		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	4	33538816	53719714	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat

Markers in Region

RH144522

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	46,858,896 - 46,859,143 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	42,990,819 - 42,991,065	NCBI	Rnor6.0
Rnor_5.0	4	42,574,855 - 42,575,101	UniSTS	Rnor5.0
RGSC_v3.4	4	44,172,013 - 44,172,259	UniSTS	RGSC3.4
Celera	4	42,117,901 - 42,118,147	UniSTS
RH 3.4 Map	4	285.9	UniSTS
Cytogenetic Map	4	q21	UniSTS

BF401529

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	46,949,056 - 46,949,227 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	43,080,963 - 43,081,133	NCBI	Rnor6.0
Rnor_5.0	4	42,665,169 - 42,665,339	UniSTS	Rnor5.0
RGSC_v3.4	4	44,262,157 - 44,262,327	UniSTS	RGSC3.4
Celera	4	42,207,705 - 42,207,875	UniSTS
RH 3.4 Map	4	284.8	UniSTS
Cytogenetic Map	4	q21	UniSTS

AI045527

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	46,801,275 - 46,801,468 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	42,933,198 - 42,933,390	NCBI	Rnor6.0
Rnor_5.0	4	42,517,234 - 42,517,426	UniSTS	Rnor5.0
RGSC_v3.4	4	44,114,392 - 44,114,584	UniSTS	RGSC3.4
Celera	4	42,060,319 - 42,060,511	UniSTS
RH 3.4 Map	4	298.61	UniSTS
Cytogenetic Map	4	q21	UniSTS

BF413676

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	46,909,248 - 46,909,422 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	43,041,167 - 43,041,340	NCBI	Rnor6.0
Rnor_5.0	4	42,625,203 - 42,625,376	UniSTS	Rnor5.0
RGSC_v3.4	4	44,222,361 - 44,222,534	UniSTS	RGSC3.4
Celera	4	42,168,227 - 42,168,400	UniSTS
RH 3.4 Map	4	283.41	UniSTS
Cytogenetic Map	4	q21	UniSTS

REN62252

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	46,877,044 - 46,877,276 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	43,008,965 - 43,009,196	NCBI	Rnor6.0
Rnor_5.0	4	42,593,001 - 42,593,232	UniSTS	Rnor5.0
RGSC_v3.4	4	44,190,159 - 44,190,390	UniSTS	RGSC3.4
Celera	4	42,136,047 - 42,136,278	UniSTS
Cytogenetic Map	4	q21	UniSTS

REN62251

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	46,877,256 - 46,877,501 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	43,009,177 - 43,009,421	NCBI	Rnor6.0
Rnor_5.0	4	42,593,213 - 42,593,457	UniSTS	Rnor5.0
RGSC_v3.4	4	44,190,371 - 44,190,615	UniSTS	RGSC3.4
Celera	4	42,136,259 - 42,136,503	UniSTS
Cytogenetic Map	4	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	81	59	6	344	181	11	142	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001114401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC087251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC111378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC119088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF053768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DP000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000087167 ⟹ ENSRNOP00000072761

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	47,766,870 - 47,930,540 (-)	Ensembl
mRatBN7.2 Ensembl	4	46,800,981 - 46,964,631 (-)	Ensembl
Rnor_6.0 Ensembl	4	42,932,903 - 43,096,399 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120156 ⟹ ENSRNOP00000077746

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	47,766,870 - 47,930,540 (-)	Ensembl
mRatBN7.2 Ensembl	4	46,800,981 - 46,964,631 (-)	Ensembl

RefSeq Acc Id:

NM_001114401 ⟹ NP_001107873

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,766,870 - 47,930,540 (-)	NCBI
mRatBN7.2	4	46,800,981 - 46,964,631 (-)	NCBI
Dahl_SR_JrHsd	4	49,537,427 - 49,700,371 (-)	NCBI
Lyon_Normotensive	4	46,970,245 - 47,133,443 (-)	NCBI
Lyon_Hypertensive	4	47,544,840 - 47,707,764 (-)	NCBI
F344_StmMcwi	4	47,345,291 - 47,507,552 (-)	NCBI
Rnor_6.0	4	42,932,903 - 43,096,399 (-)	NCBI
Rnor_5.0	4	42,516,933 - 42,680,639 (-)	NCBI
RGSC_v3.4	4	44,114,097 - 44,277,748 (-)	RGD
Celera	4	42,060,024 - 42,223,096 (-)	RGD

Sequence:

show sequence

AGCCAGCAGCGGGTTAAGCGCCGCCCGCGCCGAGAGAGCTGAGCCCTGCCGCCGCTCCGAGCTC
GCATTCGGATCCGCTAGAGCAGGAAGATGGCGACGGACAGCGCGAGCTGCGAGCCCGACTTGTC
CCGCGCCCCGGGCGACGCGGAGGGGGCCACGGCGGAGGCGGCGAAAAAGGAGTTTGATGTGGAC
ACCCTCAGCAAATCAGAGCTGCGGATGCTCCTCAGTGTGATGGAAGGTGAACTAGAAGCCAGAG
ACCTCGTGATTGAGGCCCTGCGGGCTCGCAGGAAGGAGGTGTTCATCCAGGAACGTTATGGGAG
ATTTAATCTAAACGACCCTTTCCTGGCACTCCAGAGAGACTATGAAGCGGGTGCTGGTGACAAA
GAGAAGCCAGTCTGCACCAACCCACTCTCCATTCTTGAAGCCGTCATGGCCCACTGCAGAAAAA
TGCAAGAAAGAATGTCCGCACAGCTGGCTGCCGCTGAGAGTAGGCAGAAAAAGTTGGAGATGGA
AAAGCTCCAGCTTCAGGCCCTTGAACAGGAGCACAAGAAGCTGGCTGCCCACCTGGAGGAAGAG
AGGGGCAAGAACAAGCACGTGGTCCTGATGCTGGTGAAGGAGTGCAAGCAGCTCTCAGGCAAAG
TCGTAGAGGAAGCTCAGAAGCTGGAGGAAGTCATGGTGAAATTGGAGGAGGAAAAGAAAAAGAC
AAGTGAGTTAGAAGACCAGCTCTCCGCTGAGAAACAGAGAAGCGCTGGAATGGAAGCTCAGCTG
GAGAAACAGCTCTTTGAGTTTGATACGGAACGGGAGCAGCTGCGGGCCAAGCTGACCCGAGAAG
AAGCACACACCACCGACCTCAAAGAGGAGATAGACAAGATGAAGAAAATGATGGAGCAAATGAA
GAAAGGCAACGATGGGAAGCCCGGACTCTCCCTCCCCCGGAAGACAAAAGATAAGCGACTGGCT
TCCATATCTGTGGCAACAGAAGGGCCTGTGACAAGGTCTGTTGCTTGCCAGACAGATGTAGTGA
CAGAAAGCACTGACCCTGTGAAGAAATTGCCTTTGTCTGTACCCATAAAACCTTCCACAGGGAG
CCCCCTAGTTTCCACAAACACAAAAGGGAATGTGGGCCCCAGTGCCCTGCTGATTAGACCAGGT
ATTGATAGACAAGCTTCCCACAGTGACTTGGGTCCCTCTCCACCTACTGCCCTACCGTCAAGTG
CAAGTAGAATTGAGGAAAACGGACCAAGTGCAGGCAATGCCCCTGACCTATCAAACAGCACACC
CTCAACTCCTAGTGGAACTGCCCCTGCTGCTGCTCAGACACTAGGTGCAGCACCCCAGAACCAT
TCACAAGCTCCTCCTGTGCACAGTTTACATTCACCGTGTGCCAACACTCATCCAGGTCTCAACC
CACGCATCCAAGCAGCTAGATTTAGATTTCAGGGCAATGCAAATGACCCAGACCAGAATGGAAA
TAACACTCAAAGTCCTCCCTCCAGAGATGTTTCTCCTACGAGTCGTGACAACCTAGTAGCCAAG
CAGCTAGCTCGGAATACTGTGACCCAAGCGCTGTCCAGATTTACCAGCCCTCAAGCAGGTGCTT
CTTCAAGGCTGGGAGCATCTCCAGGAGGCGATGCTGGCACCTGCCCTCCAGTTGGTCGAACCGG
TTTAAAGACTCCAGGGGCAGCACGAGTTGACAGAGGAAATCCTCCTCCTATCCCTCCCAAAAAG
CCAGGGCTCTCCCAAACTCCTTCTCCACCACACCCTCAACTGAGGGCCTCCAATGCAGGGGCCA
AAGTTGATAACAAAATTGTGGCTTCACCTCCCTCTACATTGCCACAAGGGACCAAGGTAGTAAA
TGAGGAGAACGTCCCTAAGTCATCCTCCCCTCAGCTGCCACCAAAACCATCCATAGATTTAACT
GTGGCATCTGCAGGCTGTCCCGTTTCGGCCCTGGCCACGTCTCAGGTGGGTGCCTGGCCTGCTG
AAACCCCTGGACTGAACCAACCCGCATGTACAGACAGCTCCCTTGTCATTCCCACCACCGTTGC
CTTTCGCTCTTCCATAAACCCTGTTAGTGCCTCATCCCGTAGCCCCGGTGCCTCAGACAGCCTC
TTGGTAACAGCATCAGGCTGGTCACCCTCCCTAACCCCTTTGCTAATGAGTGGTGGTCCTGCCC
CCCTGGCTGGCAGGCCCACCCTTCTTCAGCAAGCTGCTGCCCAGGGAAATGTCACTCTATTATC
AATGCTGCTTAATGAAGAAGGACTGGACATAAATTACTGCTGTGAAGATAGCCATTCTGCCTTG
TATTCTGCTGCTAAGAATGGACATACAGACTGTGTGCGATTGCTGCTGAATGCAGAAGCCCGCG
TCGACGCTGCTGATAAAAATGGCTTCACACCCTTGTGCGTTGCAGCCGCTCAGGGACATTTTGA
ATGTATAGAATTACTAACTGCATACAATGCCAACATTAATCACTCTGCTGCTGGAGGACAGACA
CCTCTGTACCTGGCCTGTAAAACTGGAAATAAGGAATGTATCAAACTCCTGCTGGAAGCTGGCA
CTGACCGGAGTATAAAAACCAGAGATGGCTGGACACCAATTCATGCAGCCGTGGACACTGGTAA
TGTGGACAGCCTCAAGCTATTGATGTACCATAGAGTGCCAGCCCCTGGAAACTCTTTGAGTGCA
GAAGAGCCCAAGTCAGGCTTGTTCAGCTTGAATGGAGGTGAGAGCCCTCCAGGTTCATCTAAGC
CTGTGGTTCCTGCGGACCTCATTAACCACGCTGACAAAGAAGGCTGGACTGCTGCCCATATTGC
TGCTTCCAAAGGTTTCAAGAACTGCCTAGAAATCTTGTGTAGGCATGGAGGGCTAGAGCCGGAA
AGGAGAGACAAGTGCAATCGGACTGTGCATGATGTTGCCACTGATGACTGCAAGCATTTGCTGG
AGAATCTGAATGCTCTTAAAATACCCTTAAGGATTTCCGTGGGTGAAATTCAACCAAGCAACGA
CGGTTCTGACGACTTTGAATGTGAACACACAATATGCACTTTAAATATCCGCAAACAGACATCA
TGGGAAGATTTTTCAAAAGCAGTGAGTCAGGCTCTGACAAATCACTTCCAAGCCATCTCTTCTG
ATGGATGTTGGGGTCTGGAAGATGGGACACTTAATAACACGACTGACTCCTGCATCGGTCTTGG
CACCAGCAGCATACAATCCATCATGCTAGGAAGTATTCCGTGGTCAACTGGTCAGAGCTTTTCC
CAGTCCCCGTGGGACTTCATGAAGAAGAAGAAGGTGGAGCAGGTCACAGTGCTCTTGTCAGGTC
CCCAAGAAGGCTGCCTCAGTAGTGTGACTTATACATCCATGATCCCACTTCAGATGCTGCAGAA
CTACCTCAGGCTGGTTGAGCAATATCATAATGTCATTTTCCATGGCCCAGAAGGAAGCTTGCAA
GACTACATAGCAAATCAGCTTGCCCTCTGCATGAAGCACAGACAGATGGCTGCAGGATTCCCCT
GTGAAATAGTGAGAGCTGAGGTGGATTCAGGTTTCTCCAAGGAACAGCTAGTAGACGTGTTCAT
CAGTAATGCCTGTCTGATCCCAGTAAAGCAGTTCCCTGTTAAGAAGAAAATAATCGTCATCTTG
GAAAATTTGGAAAAATCATCATTGTCTGAGTTACTGGGGGACTTTTTGGCACCTTTGGAGAATC
GCAGCACTGAAAGCCCATGCACTTTCCAGAAAGGAAATGGAACATCTGAATGCTATTATTTCCA
TGAGAACTGCTTTCTGCTGGGAACCCTCGCCAAGGCTTGTCTCCAGGGCTCTGACCTGCTGGTG
CAGCAACACTTCCGCTGGGTTCAGCTGCGCTGGGATTGCGAGCCCAGTCAAGGACTGCTTCAGA
GGTTCCTCCGAAGAAAAGCAGTCAGCAAGTTCAGAGGTCAGCTGCCCGCACCCTGTGATCCTGT
GTGTAAAATTGTGGACTGGGTTATCTCTGTCTGGAGGCAGCTCAACTCCTGCCTGGCCCGCTTG
GGTACACCGGAAGCACTTCTTGGACCCAAGTATTTCCTGTCTTGTCCAGTAGTCCCGGGACATG
CCCAAGCAACAGTGAAGTGGATGTCTAAGCTGTGGAACGCCATCATTGCTCCCCGAGTTCAAGA
AGCAATACTGTCAAGAGCCGCCATGAACAAACAACCTGGTGCTAGGCAGACAGCTTCGAAGAAG
CACCCTAGCCAAGGGCAGCAGGCTGTGGTGAGGGCTGCTCTCAGCATTCTGCTTAATAAAGCCA
TTCTGCATGGCTGTCCCCTTCCCAGGACAGAGCTGGACCAGCAGATAGCAGACTTCAAAGGGGG
AAGTTTCCCTCTGTCAATAGTTTCAAGTTATAGCAAGAAGAAAGGAGAGAGTGCAGCCTGGAGA
AAGGTGAACACCAGTCCTCGCAAGAAACCTGGGCACTTCTCCTCACCCATGTGGAACAAGCCAG
ACCTGAAGCATGAAGGTATGAGAAACAAGAGTGTACCACATCTGAATATTAACAGGAGCTCCTC
TCTGTCAAAGCAACAGTCCTTAGAGAATGATCTATCCATGACATTGACTTTGGACCACAGACTC
TCTTTGGGTTCAGATGATGAGGCAGATCTGGTCAAAGAACTCCAGAGTATGTGTTCCAGCAAAT
CTGAGTCTGATATAAGCAAGATTGCTGATTCCAGGGAAGACTTAAGGACATTTGATAGTTCAAG
AACCAACCCTGTGACTTCAGCACCTGTTAACCTGAGGATGCCAGTGCCACAGAAGGAAGCCAGT
CCTCTCAGCAGCCATCAAACTACCGAATGCAGCAACAGTAAATCCAAGACTGAGTTGGGTGTCT
CAAGAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCGCCCAGTGTTCCCAGAACACCAA
AAGAAGCAGCAGCAGCAGCAGTAATACAAGGCAACTAGAAATCAATAACAACTCCAAAGAAGAG
AATTGGAACGTAGACAAACACGAACACGTAGAAAAACGTAACAAATAGGCCTGCCTACAACACC
TCCAACAACGTGATCACCTTAACGTCTTTTGTATATTTCATGCAGAAACACCAAGACAAAGAAG
ATGTAAATACCTTAAAATGAATAAAACCATTTTCCTGTAATATAAAGGACAGGTGCGGGACCAC
TATTCAGCCTTTTGTAAAGAATGTATTTATAACCTCACATTTTTTTTTCTGTTAATCCTATAGG
ACTAAACTTTGATCCCATGAACTTACAGCAACCTTTCAAGTAGTTTTTTTATAATAGAAACATT
GTAATCGTTTTAATGGAGATGTTCAGGGGTATTAAAGCAGAAGTGTCTGTGTACTGTATATTTC
TATCTGTACATATGTACATATATGTATATTGACAGAAGTTGCATACATGTGTACAAGATTGGCT
TAGATGAAATGTGCCAGTTTGAATGGAGATGATAATTTTATGCTCATCTGATGGGGAATGACTC
GAATGGGGCAATAACAAAACATTTCTAAACAGTTATTTTCCATTAAAAGCCATATGAAGTATTT
TGCCTGTTAAAATTCTAGTTTTACATTTTGAATCTTTTAGTGGTTACATTGCCATCTGGTTGCA
TCATGTATATATATTTACGCTTCTTAATTTGCATTATGACTTGTAAAAAATATGAAATTATAAT
GCAATAAAAGTGTTATCTTTCTTACAAAACTTTTGTACCTAAGTGGATATAAAAGTTATCTGCA
TCAAGAAAGACATCAATTAAATGAATTTGGAGTTAACGCCTTCAATATATTTCTAATAACACAC
CGATAATAAAATTAATATTTTCTAGAAGTGTGTCTTATAAAGGAATGGTGAAGTTATTTATCCA
ATTTACGGTTAAGGTACTTTGATGCCAAATAAAATTTTGAACTAGTG

hide sequence

RefSeq Acc Id:

XM_017592494 ⟹ XP_017447983

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,766,867 - 47,930,591 (-)	NCBI
mRatBN7.2	4	46,800,975 - 46,964,681 (-)	NCBI
Rnor_6.0	4	42,932,897 - 43,096,454 (-)	NCBI

Sequence:

show sequence

TGCGGAAAGGCGGGAGGGGACCGCCGAGCTCCGGGGCTGAGAGCGCCGCGGCCACAGCCAGCAG
CGGGTTAAGCGCCGCCCGCGCCGAGAGAGCTGAGCCCTGCCGCCGCTCCGAGCTCGCATTCGGA
TCCGCTAGAGCAGGAAGATGGCGACGGACAGCGCGAGCTGCGAGCCCGACTTGTCCCGCGCCCC
GGGCGACGCGGAGGGGGCCACGGCGGAGGCGGCGAAAAAGGAGTTTGATGTGGACACCCTCAGC
AAATCAGAGCTGCGGATGCTCCTCAGTGTGATGGAAGGTGAACTAGAAGCCAGAGACCTCGTGA
TTGAGGCCCTGCGGGCTCGCAGGAAGGAGGTGTTCATCCAGGAACGTTATGGGAGATTTAATCT
AAACGACCCTTTCCTGGCACTCCAGAGAGACTATGAAGCGGGTGCTGGTGACAAAGAGAAGCCA
GTCTGCACCAACCCACTCTCCATTCTTGAAGCCGTCATGGCCCACTGCAGAAAAATGCAAGAAA
GAATGTCCGCACAGCTGGCTGCCGCTGAGAGTAGGCAGAAAAAGTTGGAGATGGAAAAGCTCCA
GCTTCAGGCCCTTGAACAGGAGCACAAGAAGCTGGCTGCCCACCTGGAGGAAGAGAGGGGCAAG
AACAAGCACGTGGTCCTGATGCTGGTGAAGGAGTGCAAGCAGCTCTCAGGCAAAGTCGTAGAGG
AAGCTCAGAAGCTGGAGGAAGTCATGGTGAAATTGGAGGAGGAAAAGAAAAAGACAAGTGAGTT
AGAAGACCAGCTCTCCGCTGAGAAACAGAGAAGCGCTGGAATGGAAGCTCAGCTGGAGAAACAG
CTCTTTGAGTTTGATACGGAACGGGAGCAGCTGCGGGCCAAGCTGACCCGAGAAGAAGCACACA
CCACCGACCTCAAAGAGGAGATAGACAAGATGAAGAAAATGATGGAGCAAATGAAGAAAGGCAA
CGATGGGAAGCCCGGACTCTCCCTCCCCCGGAAGACAAAAGATAAGCGACTGGCTTCCATATCT
GTGGCAACAGAAGGGCCTGTGACAAGGTCTGTTGCTTGCCAGACAGATGTAGTGACAGAAAGCA
CTGACCCTGTGAAGAAATTGCCTTTGTCTGTACCCATAAAACCTTCCACAGGGAGCCCCCTAGT
TTCCACAAACACAAAAGGGAATGTGGGCCCCAGTGCCCTGCTGATTAGACCAGGTATTGATAGA
CAAGCTTCCCACAGTGACTTGGGTCCCTCTCCACCTACTGCCCTACCGTCAAGTGCAAGTAGAA
TTGAGGAAAACGGACCAAGTGCAGGCAATGCCCCTGACCTATCAAACAGCACACCCTCAACTCC
TAGTGGAACTGCCCCTGCTGCTGCTCAGACACTAGGTGCAGCACCCCAGAACCATTCACAAGCT
CCTCCTGTGCACAGTTTACATTCACCGTGTGCCAACACTCATCCAGGTCTCAACCCACGCATCC
AAGCAGCTAGATTTAGATTTCAGGGCAATGCAAATGACCCAGACCAGAATGGAAATAACACTCA
AAGTCCTCCCTCCAGAGATGTTTCTCCTACGAGTCGTGACAACCTAGTAGCCAAGCAGCTAGCT
CGGAATACTGTGACCCAAGCGCTGTCCAGATTTACCAGCCCTCAAGCAGGTGCTTCTTCAAGGC
TGGGAGCATCTCCAGGAGGCGATGCTGGCACCTGCCCTCCAGTTGGTCGAACCGGTTTAAAGAC
TCCAGGGGCAGCACGAGTTGACAGAGGAAATCCTCCTCCTATCCCTCCCAAAAAGCCAGGGCTC
TCCCAAACTCCTTCTCCACCACACCCTCAACTGAGGGCCTCCAATGCAGGGGCCAAAGTTGATA
ACAAAATTGTGGCTTCACCTCCCTCTACATTGCCACAAGGGACCAAGGTAGTAAATGAGGAGAA
CGTCCCTAAGTCATCCTCCCCTCAGCTGCCACCAAAACCATCCATAGATTTAACTGTGGCATCT
GCAGGCTGTCCCGTTTCGGCCCTGGCCACGTCTCAGGTGGGTGCCTGGCCTGCTGAAACCCCTG
GACTGAACCAACCCGCATGTACAGACAGCTCCCTTGTCATTCCCACCACCGTTGCCTTTCGCTC
TTCCATAAACCCTGTTAGTGCCTCATCCCGTAGCCCCGGTGCCTCAGACAGCCTCTTGGTAACA
GCATCAGGCTGGTCACCCTCCCTAACCCCTTTGCTAATGAGTGGTGGTCCTGCCCCCCTGGCTG
GCAGGCCCACCCTTCTTCAGCAAGCTGCTGCCCAGGGAAATGTCACTCTATTATCAATGCTGCT
TAATGAAGAAGGACTGGACATAAATTACTGCTGTGAAGATAGCCATTCTGCCTTGTATTCTGCT
GCTAAGAATGGACATACAGACTGTGTGCGATTGCTGCTGAATGCAGAAGCCCGCGTCGACGCTG
CTGATAAAAATGGCTTCACACCCTTGTGCGTTGCAGCCGCTCAGGGACATTTTGAATGTATAGA
ATTACTAACTGCATACAATGCCAACATTAATCACTCTGCTGCTGGAGGACAGACACCTCTGTAC
CTGGCCTGTAAAACTGGAAATAAGGAATGTATCAAACTCCTGCTGGAAGCTGGCACTGACCGGA
GTATAAAAACCAGAGATGGCTGGACACCAATTCATGCAGCCGTGGACACTGGTAATGTGGACAG
CCTCAAGCTATTGATGTACCATAGAGTGCCAGCCCCTGGAAACTCTTTGAGTGCAGAAGAGCCC
AAGTCAGGCTTGTTCAGCTTGAATGGAGGTGAGAGCCCTCCAGGTTCATCTAAGCCTGTGGTTC
CTGCGGACCTCATTAACCACGCTGACAAAGAAGGCTGGACTGCTGCCCATATTGCTGCTTCCAA
AGGTTTCAAGAACTGCCTAGAAATCTTGTGTAGGCATGGAGGGCTAGAGCCGGAAAGGAGAGAC
AAGTGCAATCGGACTGTGCATGATGTTGCCACTGATGACTGCAAGCATTTGCTGGAGAATCTGA
ATGCTCTTAAAATACCCTTAAGGATTTCCGTGGGTGAAATTCAACCAAGCAACGACGGTTCTGA
CGACTTTGAATGTGAACACACAATATGCACTTTAAATATCCGCAAACAGACATCATGGGAAGAT
TTTTCAAAAGCAGTGAGTCAGGCTCTGACAAATCACTTCCAAGCCATCTCTTCTGATGGATGTT
GGGGTCTGGAAGATGGGACACTTAATAACACGACTGACTCCTGCATCGGTCTTGGCACCAGCAG
CATACAATCCATCATGCTAGGAAGTATTCCGTGGTCAACTGGTCAGAGCTTTTCCCAGTCCCCG
TGGGACTTCATGAAGAAGAAGAAGGTGGAGCAGGTCACAGTGCTCTTGTCAGGTCCCCAAGAAG
GCTGCCTCAGTAGTGTGACTTATACATCCATGATCCCACTTCAGATGCTGCAGAACTACCTCAG
GCTGGTTGAGCAATATCATAATGTCATTTTCCATGGCCCAGAAGGAAGCTTGCAAGACTACATA
GCAAATCAGCTTGCCCTCTGCATGAAGCACAGACAGATGGCTGCAGGATTCCCCTGTGAAATAG
TGAGAGCTGAGGTGGATTCAGGTTTCTCCAAGGAACAGCTAGTAGACGTGTTCATCAGTAATGC
CTGTCTGATCCCAGTAAAGCAGTTCCCTGTTAAGAAGAAAATAATCGTCATCTTGGAAAATTTG
GAAAAATCATCATTGTCTGAGTTACTGGGGGACTTTTTGGCACCTTTGGAGAATCGCAGCACTG
AAAGCCCATGCACTTTCCAGAAAGGTAAAGGAAATGGAACATCTGAATGCTATTATTTCCATGA
GAACTGCTTTCTGCTGGGAACCCTCGCCAAGGCTTGTCTCCAGGGCTCTGACCTGCTGGTGCAG
CAACACTTCCGCTGGGTTCAGCTGCGCTGGGATTGCGAGCCCAGTCAAGGACTGCTTCAGAGGT
TCCTCCGAAGAAAAGCAGTCAGCAAGTTCAGAGGTCAGCTGCCCGCACCCTGTGATCCTGTGTG
TAAAATTGTGGACTGGGTTATCTCTGTCTGGAGGCAGCTCAACTCCTGCCTGGCCCGCTTGGGT
ACACCGGAAGCACTTCTTGGACCCAAGTATTTCCTGTCTTGTCCAGTAGTCCCGGGACATGCCC
AAGCAACAGTGAAGTGGATGTCTAAGCTGTGGAACGCCATCATTGCTCCCCGAGTTCAAGAAGC
AATACTGTCAAGAGCCGCCATGAACAAACAACCTGGTGCTAGGCAGACAGCTTCGAAGAAGCAC
CCTAGCCAAGGGCAGCAGGCTGTGGTGAGGGCTGCTCTCAGCATTCTGCTTAATAAAGCCATTC
TGCATGGCTGTCCCCTTCCCAGGACAGAGCTGGACCAGCAGATAGCAGACTTCAAAGGGGGAAG
TTTCCCTCTGTCAATAGTTTCAAGTTATAGCAAGAAGAAAGGAGAGAGTGCAGCCTGGAGAAAG
GTGAACACCAGTCCTCGCAAGAAACCTGGGCACTTCTCCTCACCCATGTGGAACAAGCCAGACC
TGAAGCATGAAGGTATGAGAAACAAGAGTGTACCACATCTGAATATTAACAGGAGCTCCTCTCT
GTCAAAGCAACAGTCCTTAGAGAATGATCTATCCATGACATTGACTTTGGACCACAGACTCTCT
TTGGGTTCAGATGATGAGGCAGATCTGGTCAAAGAACTCCAGAGTATGTGTTCCAGCAAATCTG
AGTCTGATATAAGCAAGATTGCTGATTCCAGGGAAGACTTAAGGACATTTGATAGTTCAAGAAC
CAACCCTGTGACTTCAGCACCTGTTAACCTGAGGATGCCAGTGCCACAGAAGGAAGCCAGTCCT
CTCAGCAGCCATCAAACTACCGAATGCAGCAACAGTAAATCCAAGACTGAGTTGGGTGTCTCAA
GAGTTAAATCTTTTCTTCCTGTTCCTAGAAGTAAAGTCGCCCAGTGTTCCCAGAACACCAAAAG
AAGCAGCAGCAGCAGCAGTAATACAAGGCAACTAGAAATCAATAACAACTCCAAAGAAGAGAAT
TGGAACGTAGACAAACACGAACACGTAGAAAAACGTAACAAATAGGCCTGCCTACAACACCTCC
AACAACGTGATCACCTTAACGTCTTTTGTATATTTCATGCAGAAACACCAAGACAAAGAAGATG
TAAATACCTTAAAATGAATAAAACCATTTTCCTGTAATATAAAGGACAGGTGCGGGACCACTAT
TCAGCCTTTTGTAAAGAATGTATTTATAACCTCACATTTTTTTTTCTGTTAATCCTATAGGACT
AAACTTTGATCCCATGAACTTACAGCAACCTTTCAAGTAGTTTTTTTATAATAGAAACATTGTA
ATCGTTTTAATGGAGATGTTCAGGGGTATTAAAGCAGAAGTGTCTGTGTACTGTATATTTCTAT
CTGTACATATGTACATATATGTATATTGACAGAAGTTGCATACATGTGTACAAGATTGGCTTAG
ATGAAATGTGCCAGTTTGAATGGAGATGATAATTTTATGCTCATCTGATGGGGAATGACTCGAA
TGGGGCAATAACAAAACATTTCTAAACAGTTATTTTCCATTAAAAGCCATATGAAGTATTTTGC
CTGTTAAAATTCTAGTTTTACATTTTGAATCTTTTAGTGGTTACATTGCCATCTGGTTGCATCA
TGTATATATATTTACGCTTCTTAATTTGCATTATGACTTGTAAAAAATATGAAATTATAATGCA
ATAAAAGTGTTATCTTTCTTACAAAACTTTTGTACCTAAGTGGATATAAAAGTTATCTGCATCA
AGAAAGACATCAATTAAATGAATTTGGAGTTAACGCCTTCAATATATTTCTAATAACACACCGA
TAATAAAATTAATATTTTCTAGAAGTGTGTCTTATAAAGGAATGGTGAAGTTATTTATCCAATT
TACGGTTAAGGTACTTTGATGCCAAATAAAATTTTGAACTAGTGAAATTA

hide sequence

RefSeq Acc Id:

XM_039107159 ⟹ XP_038963087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,766,867 - 47,930,591 (-)	NCBI
mRatBN7.2	4	46,800,975 - 46,964,681 (-)	NCBI

RefSeq Acc Id:

XM_039107160 ⟹ XP_038963088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,781,785 - 47,930,595 (-)	NCBI
mRatBN7.2	4	46,815,896 - 46,964,681 (-)	NCBI

RefSeq Acc Id:

XM_039107161 ⟹ XP_038963089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,813,448 - 47,930,596 (-)	NCBI
mRatBN7.2	4	46,847,564 - 46,964,681 (-)	NCBI

RefSeq Acc Id:

XM_039107162 ⟹ XP_038963090

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	47,834,054 - 47,930,598 (-)	NCBI
mRatBN7.2	4	46,867,525 - 46,964,681 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001107873	(Get FASTA)	NCBI Sequence Viewer
	XP_017447983	(Get FASTA)	NCBI Sequence Viewer
	XP_038963087	(Get FASTA)	NCBI Sequence Viewer
	XP_038963088	(Get FASTA)	NCBI Sequence Viewer
	XP_038963089	(Get FASTA)	NCBI Sequence Viewer
	XP_038963090	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC35911	(Get FASTA)	NCBI Sequence Viewer
	AAR16316	(Get FASTA)	NCBI Sequence Viewer
	EDM15128	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072761
	ENSRNOP00000072761.1
	ENSRNOP00000077746
GenBank Protein	Q2IBD4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001107873 ⟸ NM_001114401

- UniProtKB:

O88864 (UniProtKB/Swiss-Prot), Q2IBD4 (UniProtKB/Swiss-Prot), A0A8I5YC08 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATDSASCEPDLSRAPGDAEGATAEAAKKEFDVDTLSKSELRMLLSVMEGELEARDLVIEALRA
RRKEVFIQERYGRFNLNDPFLALQRDYEAGAGDKEKPVCTNPLSILEAVMAHCRKMQERMSAQL
AAAESRQKKLEMEKLQLQALEQEHKKLAAHLEEERGKNKHVVLMLVKECKQLSGKVVEEAQKLE
EVMVKLEEEKKKTSELEDQLSAEKQRSAGMEAQLEKQLFEFDTEREQLRAKLTREEAHTTDLKE
EIDKMKKMMEQMKKGNDGKPGLSLPRKTKDKRLASISVATEGPVTRSVACQTDVVTESTDPVKK
LPLSVPIKPSTGSPLVSTNTKGNVGPSALLIRPGIDRQASHSDLGPSPPTALPSSASRIEENGP
SAGNAPDLSNSTPSTPSGTAPAAAQTLGAAPQNHSQAPPVHSLHSPCANTHPGLNPRIQAARFR
FQGNANDPDQNGNNTQSPPSRDVSPTSRDNLVAKQLARNTVTQALSRFTSPQAGASSRLGASPG
GDAGTCPPVGRTGLKTPGAARVDRGNPPPIPPKKPGLSQTPSPPHPQLRASNAGAKVDNKIVAS
PPSTLPQGTKVVNEENVPKSSSPQLPPKPSIDLTVASAGCPVSALATSQVGAWPAETPGLNQPA
CTDSSLVIPTTVAFRSSINPVSASSRSPGASDSLLVTASGWSPSLTPLLMSGGPAPLAGRPTLL
QQAAAQGNVTLLSMLLNEEGLDINYCCEDSHSALYSAAKNGHTDCVRLLLNAEARVDAADKNGF
TPLCVAAAQGHFECIELLTAYNANINHSAAGGQTPLYLACKTGNKECIKLLLEAGTDRSIKTRD
GWTPIHAAVDTGNVDSLKLLMYHRVPAPGNSLSAEEPKSGLFSLNGGESPPGSSKPVVPADLIN
HADKEGWTAAHIAASKGFKNCLEILCRHGGLEPERRDKCNRTVHDVATDDCKHLLENLNALKIP
LRISVGEIQPSNDGSDDFECEHTICTLNIRKQTSWEDFSKAVSQALTNHFQAISSDGCWGLEDG
TLNNTTDSCIGLGTSSIQSIMLGSIPWSTGQSFSQSPWDFMKKKKVEQVTVLLSGPQEGCLSSV
TYTSMIPLQMLQNYLRLVEQYHNVIFHGPEGSLQDYIANQLALCMKHRQMAAGFPCEIVRAEVD
SGFSKEQLVDVFISNACLIPVKQFPVKKKIIVILENLEKSSLSELLGDFLAPLENRSTESPCTF
QKGNGTSECYYFHENCFLLGTLAKACLQGSDLLVQQHFRWVQLRWDCEPSQGLLQRFLRRKAVS
KFRGQLPAPCDPVCKIVDWVISVWRQLNSCLARLGTPEALLGPKYFLSCPVVPGHAQATVKWMS
KLWNAIIAPRVQEAILSRAAMNKQPGARQTASKKHPSQGQQAVVRAALSILLNKAILHGCPLPR
TELDQQIADFKGGSFPLSIVSSYSKKKGESAAWRKVNTSPRKKPGHFSSPMWNKPDLKHEGMRN
KSVPHLNINRSSSLSKQQSLENDLSMTLTLDHRLSLGSDDEADLVKELQSMCSSKSESDISKIA
DSREDLRTFDSSRTNPVTSAPVNLRMPVPQKEASPLSSHQTTECSNSKSKTELGVSRVKSFLPV
PRSKVAQCSQNTKRSSSSSSNTRQLEINNNSKEENWNVDKHEHVEKRNK

hide sequence

RefSeq Acc Id:	XP_017447983 ⟸ XM_017592494
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5YC08 (UniProtKB/TrEMBL)
- Sequence:	show sequence MATDSASCEPDLSRAPGDAEGATAEAAKKEFDVDTLSKSELRMLLSVMEGELEARDLVIEALRA RRKEVFIQERYGRFNLNDPFLALQRDYEAGAGDKEKPVCTNPLSILEAVMAHCRKMQERMSAQL AAAESRQKKLEMEKLQLQALEQEHKKLAAHLEEERGKNKHVVLMLVKECKQLSGKVVEEAQKLE EVMVKLEEEKKKTSELEDQLSAEKQRSAGMEAQLEKQLFEFDTEREQLRAKLTREEAHTTDLKE EIDKMKKMMEQMKKGNDGKPGLSLPRKTKDKRLASISVATEGPVTRSVACQTDVVTESTDPVKK LPLSVPIKPSTGSPLVSTNTKGNVGPSALLIRPGIDRQASHSDLGPSPPTALPSSASRIEENGP SAGNAPDLSNSTPSTPSGTAPAAAQTLGAAPQNHSQAPPVHSLHSPCANTHPGLNPRIQAARFR FQGNANDPDQNGNNTQSPPSRDVSPTSRDNLVAKQLARNTVTQALSRFTSPQAGASSRLGASPG GDAGTCPPVGRTGLKTPGAARVDRGNPPPIPPKKPGLSQTPSPPHPQLRASNAGAKVDNKIVAS PPSTLPQGTKVVNEENVPKSSSPQLPPKPSIDLTVASAGCPVSALATSQVGAWPAETPGLNQPA CTDSSLVIPTTVAFRSSINPVSASSRSPGASDSLLVTASGWSPSLTPLLMSGGPAPLAGRPTLL QQAAAQGNVTLLSMLLNEEGLDINYCCEDSHSALYSAAKNGHTDCVRLLLNAEARVDAADKNGF TPLCVAAAQGHFECIELLTAYNANINHSAAGGQTPLYLACKTGNKECIKLLLEAGTDRSIKTRD GWTPIHAAVDTGNVDSLKLLMYHRVPAPGNSLSAEEPKSGLFSLNGGESPPGSSKPVVPADLIN HADKEGWTAAHIAASKGFKNCLEILCRHGGLEPERRDKCNRTVHDVATDDCKHLLENLNALKIP LRISVGEIQPSNDGSDDFECEHTICTLNIRKQTSWEDFSKAVSQALTNHFQAISSDGCWGLEDG TLNNTTDSCIGLGTSSIQSIMLGSIPWSTGQSFSQSPWDFMKKKKVEQVTVLLSGPQEGCLSSV TYTSMIPLQMLQNYLRLVEQYHNVIFHGPEGSLQDYIANQLALCMKHRQMAAGFPCEIVRAEVD SGFSKEQLVDVFISNACLIPVKQFPVKKKIIVILENLEKSSLSELLGDFLAPLENRSTESPCTF QKGKGNGTSECYYFHENCFLLGTLAKACLQGSDLLVQQHFRWVQLRWDCEPSQGLLQRFLRRKA VSKFRGQLPAPCDPVCKIVDWVISVWRQLNSCLARLGTPEALLGPKYFLSCPVVPGHAQATVKW MSKLWNAIIAPRVQEAILSRAAMNKQPGARQTASKKHPSQGQQAVVRAALSILLNKAILHGCPL PRTELDQQIADFKGGSFPLSIVSSYSKKKGESAAWRKVNTSPRKKPGHFSSPMWNKPDLKHEGM RNKSVPHLNINRSSSLSKQQSLENDLSMTLTLDHRLSLGSDDEADLVKELQSMCSSKSESDISK IADSREDLRTFDSSRTNPVTSAPVNLRMPVPQKEASPLSSHQTTECSNSKSKTELGVSRVKSFL PVPRSKVAQCSQNTKRSSSSSSNTRQLEINNNSKEENWNVDKHEHVEKRNK hide sequence

Ensembl Acc Id:

ENSRNOP00000072761 ⟸ ENSRNOT00000087167

RefSeq Acc Id:	XP_038963087 ⟸ XM_039107159
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5YC08 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963088 ⟸ XM_039107160
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038963089 ⟸ XM_039107161
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038963090 ⟸ XM_039107162
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000077746 ⟸ ENSRNOT00000120156

Protein Domains

Cortactin-binding protein-2 N-terminal CortBP2/NAV1-like AAA+ ATPase lid

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2IBD4-F1-model_v2	AlphaFold	Q2IBD4	1-1649	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692888

Promoter ID:

EPDNEW_R3412

Type:

single initiation site

Name:

Cttnbp2_1

Description:

cortactin binding protein 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	43,096,333 - 43,096,393	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628691	AgrOrtholog
BioCyc Gene	G2FUF-45538	BioCyc
Ensembl Genes	ENSRNOG00000061845	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000087167	ENTREZGENE
	ENSRNOT00000087167.2	UniProtKB/Swiss-Prot
	ENSRNOT00000120156	ENTREZGENE
Gene3D-CATH	1.25.40.20	UniProtKB/Swiss-Prot
InterPro	Ankyrin_rpt	UniProtKB/Swiss-Prot
	Ankyrin_rpt-contain_sf	UniProtKB/Swiss-Prot
	Cortactin-binding_p2_N	UniProtKB/Swiss-Prot
	Dendritic_Spine_Reg/Scaffold	UniProtKB/Swiss-Prot
KEGG Report	rno:282587	UniProtKB/Swiss-Prot
NCBI Gene	282587	ENTREZGENE
PANTHER	CORTACTIN-BINDING PROTEIN 2	UniProtKB/Swiss-Prot
	ROLLING PEBBLES, ISOFORM B	UniProtKB/Swiss-Prot
Pfam	AAA_lid_NAV1	UniProtKB/Swiss-Prot
	Ank	UniProtKB/Swiss-Prot
	Ank_2	UniProtKB/Swiss-Prot
	CortBP2	UniProtKB/Swiss-Prot
PhenoGen	Cttnbp2	PhenoGen
PROSITE	ANK_REP_REGION	UniProtKB/Swiss-Prot
	ANK_REPEAT	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000061845	RatGTEx
SMART	ANK	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48403	UniProtKB/Swiss-Prot
UniProt	A0A8I5YC08	ENTREZGENE, UniProtKB/TrEMBL
	CTTB2_RAT	UniProtKB/Swiss-Prot
	O88864	ENTREZGENE
	Q2IBD4	ENTREZGENE
UniProt Secondary	O88864	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-20	Cttnbp2	cortactin binding protein 2	Cbp90	brain specific cortactin-binding protein CBP90	Symbol and Name updated	1299863	APPROVED
2003-02-27	Cbp90	brain specific cortactin-binding protein CBP90			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in brain only	632437
gene_physical_interaction	able to bind to all cortactin isoforms	632437
gene_protein	predicted protein masses 90 kDa	632437

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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