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Gene: Exoc3 (exocyst complex component 3) Rattus norvegicus

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Symbol:

Exoc3

Name:

exocyst complex component 3

RGD ID:

621790

Description:

Predicted to enable SNARE binding activity. Predicted to be involved in exocyst localization and exocytosis. Is active in presynaptic membrane. Orthologous to human EXOC3 (exocyst complex component 3); PARTICIPATES IN E-cadherin signaling pathway; insulin signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

exocyst complex component Sec6; rSec6; Sec6; SEC6-like 1; SEC6-like 1 (S. cerevisiae); Sec6l1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	EXOC3 (exocyst complex component 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Exoc3 (exocyst complex component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Exoc3 (exocyst complex component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	EXOC3 (exocyst complex component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	EXOC3 (exocyst complex component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Exoc3 (exocyst complex component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	EXOC3 (exocyst complex component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	EXOC3 (exocyst complex component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Exoc3 (exocyst complex component 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Exoc3 (exocyst complex component 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	EXOC3 (exocyst complex component 3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	exoc3 (exocyst complex component 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SEC6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Sec6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sec-6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	exoc3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	exoc3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	30,919,871 - 30,950,624 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	1	29,091,298 - 29,122,056 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	29,091,294 - 29,122,045 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	28,893,113 - 28,923,914 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	34,892,975 - 34,923,773 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	29,093,734 - 29,124,536 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	31,700,953 - 31,731,726 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	31,700,953 - 31,731,815 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	33,126,575 - 33,159,109 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	29,897,536 - 29,928,281 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	27,743,063 - 27,773,955 (+)	NCBI		Celera
RGSC_v3.1	1	29,902,027 - 29,931,141 (+)	NCBI
Cytogenetic Map	1	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

allethrin (EXP)

alpha-pinene (ISO)

ammonium chloride (EXP)

Aroclor 1254 (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butan-1-ol (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

cyhalothrin (EXP)

cypermethrin (EXP)

dexamethasone (ISO)

dibutyl phthalate (ISO)

diuron (EXP)

elemental selenium (ISO)

ethanol (ISO)

fenvalerate (EXP)

finasteride (EXP)

flutamide (EXP)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP,ISO)

indometacin (ISO)

ivermectin (ISO)

leflunomide (EXP)

methyl methanesulfonate (ISO)

Nor-9-carboxy-delta9-THC (ISO)

ozone (ISO)

phenylmercury acetate (ISO)

piroxicam (ISO)

potassium dichromate (ISO)

pyrethrins (EXP)

selenium atom (ISO)

sodium arsenite (ISO)

sulindac (EXP)

tamibarotene (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

exocyst localization (IBA)

exocytosis (IBA,IEA)

protein transport (IEA)

regulation of DNA-templated transcription (IEA)

Cellular Component

cytoplasm (IEA)

exocyst (IBA,IEA)

Golgi apparatus (IEA)

growth cone (IEA)

membrane (IEA)

midbody (IEA)

neuron projection (IEA)

perinuclear region of cytoplasm (IEA)

presynaptic membrane (IDA)

Molecular Function

protein binding (IPI,ISO)

protein dimerization activity (IEA)

SNARE binding (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

E-cadherin signaling pathway (ISO)

insulin signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	The glycine transporter GLYT1 interacts with Sec3, a component of the exocyst complex.	Cubelos B, etal., Neuropharmacology. 2005 Nov;49(6):935-44. doi: 10.1016/j.neuropharm.2005.07.021. Epub 2005 Sep 21.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	MyRIP anchors protein kinase A to the exocyst complex.	Goehring AS, etal., J Biol Chem. 2007 Nov 9;282(45):33155-67. Epub 2007 Sep 7.
4.	GRIP1 and 2 regulate activity-dependent AMPA receptor recycling via exocyst complex interactions.	Mao L, etal., Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):19038-43. doi: 10.1073/pnas.1013494107. Epub 2010 Oct 18.
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	rSec6 and rSec8, mammalian homologs of yeast proteins essential for secretion.	Ting AE, etal., Proc Natl Acad Sci U S A 1995 Oct 10;92(21):9613-7.
11.	Sec6 is localized to the plasma membrane of mature synaptic terminals and is transported with secretogranin II-containing vesicles.	Vik-Mo EO, etal., Neuroscience. 2003;119(1):73-85.

Additional References at PubMed

PMID:11406615	PMID:12477932	PMID:15489334	PMID:25468996

Genomics

Comparative Map Data

Exoc3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	30,919,871 - 30,950,624 (+)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	1	29,091,298 - 29,122,056 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	29,091,294 - 29,122,045 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	28,893,113 - 28,923,914 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	34,892,975 - 34,923,773 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	29,093,734 - 29,124,536 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	31,700,953 - 31,731,726 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	31,700,953 - 31,731,815 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	33,126,575 - 33,159,109 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	29,897,536 - 29,928,281 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	27,743,063 - 27,773,955 (+)	NCBI		Celera
RGSC_v3.1	1	29,902,027 - 29,931,141 (+)	NCBI
Cytogenetic Map	1	p11	NCBI

EXOC3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	443,176 - 467,290 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	442,522 - 471,937 (+)	Ensembl			hg38	GRCh38
GRCh37	5	443,291 - 467,405 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	496,334 - 520,411 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	496,374 - 520,407	NCBI
Celera	5	541,456 - 565,545 (+)	NCBI		Celera
Cytogenetic Map	5	p15.33	NCBI
HuRef	5	431,407 - 455,422 (+)	NCBI		HuRef
CHM1_1	5	443,164 - 467,222 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	438,418 - 462,555 (+)	NCBI		T2T-CHM13v2.0

Exoc3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	74,317,921 - 74,358,151 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	74,317,607 - 74,356,851 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	74,169,802 - 74,210,032 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	74,169,488 - 74,208,732 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	74,307,253 - 74,346,148 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	74,635,807 - 74,674,702 (-)	NCBI		MGSCv36	mm8
Celera	13	76,499,394 - 76,538,276 (-)	NCBI		Celera
Cytogenetic Map	13	C1	NCBI
cM Map	13	40.15	NCBI

Exoc3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955504	196,695 - 223,812 (+)	Ensembl
ChiLan1.0	NW_004955504	195,743 - 223,812 (+)	NCBI	ChiLan1.0	ChiLan1.0

EXOC3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	662,394 - 690,011 (+)	NCBI		NHGRI_mPanPan1-v2
PanPan1.1 Ensembl	5	568,471 - 596,723 (+)	Ensembl			panPan2	panpan1.1

EXOC3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	11,790,927 - 11,811,566 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	11,791,926 - 11,811,561 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	16,304,626 - 16,325,902 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	11,695,749 - 11,716,848 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	11,694,759 - 11,716,578 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	11,746,203 - 11,767,708 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	11,727,053 - 11,748,335 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	11,937,421 - 11,958,497 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Exoc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	244,844,352 - 244,861,748 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936815	1,005,560 - 1,023,070 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936815	1,005,637 - 1,022,916 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EXOC3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	79,705,750 - 79,730,047 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	79,705,743 - 79,730,272 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

EXOC3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	320,067 - 359,647 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	337,658 - 360,149 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666064	27,462,671 - 27,487,604 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Exoc3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624751	215,821 - 255,104 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624751	215,762 - 254,200 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Exoc3
224 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	116
Count of miRNA genes:	86
Interacting mature miRNAs:	92
Transcripts:	ENSRNOT00000020251
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	7746118	52746118	Rat
1357397	Bw41	Body weight QTL 41	4.19	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	1	29409279	74409279	Rat
2313090	Bmd69	Bone mineral density QTL 69	4.4	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	5293229	34184556	Rat
4889451	Eae29	Experimental allergic encephalomyelitis QTL 29	5.51		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	7746121	52746121	Rat
70179	Xhs2	X-ray hypersensitivity QTL 2	3.2		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	1	1	43965634	Rat
1558642	Prcr2	Prostate cancer resistance QTL 2	4.3		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	1	10379492	55379492	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	6941022	51941022	Rat
1357401	Bw43	Body weight QTL 43	3.75		body mass (VT:0001259)	body weight (CMO:0000012)	1	6909353	51909353	Rat
2313070	Bss52	Bone structure and strength QTL 52	4.4	0.0001	body length (VT:0001256)	body length (CMO:0000013)	1	5293229	34184556	Rat
631494	Bp95	Blood pressure QTL 95	40	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	17315378	51816258	Rat
5684998	Bss101	Bone structure and strength QTL 101	3.6		tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	1	6909353	51909353	Rat
5684999	Bss102	Bone structure and strength QTL 102	5.5	7e-07	tibia strength trait (VT:1000284)	tibia stiffness (CMO:0001735)	1	6909353	51909353	Rat
2302038	Pia31	Pristane induced arthritis QTL 31	5.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	1	12820494	57820494	Rat
634353	Rends2	Renal damage susceptibility QTL 2		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	1	20656420	65656420	Rat
2317755	Glom22	Glomerulus QTL 22	3.8		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	1	34184556	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	20508326	65508326	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	30708375	87558729	Rat
631508	Sald1	Serum aldosterone level QTL 1	3.7		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	1	11684464	56684464	Rat
2313053	Bss51	Bone structure and strength QTL 51	3.8	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	5293229	34184556	Rat

Markers in Region

D1Got38

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	29,098,144 - 29,098,329 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	31,707,798 - 31,707,982	NCBI	Rnor6.0
Rnor_5.0	1	33,133,228 - 33,133,412	UniSTS	Rnor5.0
RGSC_v3.4	1	29,904,378 - 29,904,563	RGD	RGSC3.4
RGSC_v3.4	1	29,904,379 - 29,904,563	UniSTS	RGSC3.4
Celera	1	27,749,908 - 27,750,092	UniSTS
RGSC_v3.1	1	29,907,323 - 29,907,508	RGD
Cytogenetic Map	1	p11	UniSTS

RH131026

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	29,121,898 - 29,122,081 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	31,731,552 - 31,731,734	NCBI	Rnor6.0
Rnor_5.0	1	33,156,832 - 33,157,014	UniSTS	Rnor5.0
RGSC_v3.4	1	29,928,133 - 29,928,315	UniSTS	RGSC3.4
Celera	1	27,773,807 - 27,773,989	UniSTS
Cytogenetic Map	1	p11	UniSTS

RH142744

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	29,103,267 - 29,103,539 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	31,712,921 - 31,713,192	NCBI	Rnor6.0
Rnor_5.0	1	33,138,201 - 33,138,472	UniSTS	Rnor5.0
RGSC_v3.4	1	29,909,502 - 29,909,773	UniSTS	RGSC3.4
Celera	1	27,755,181 - 27,755,452	UniSTS
RH 3.4 Map	1	342.9	UniSTS
Cytogenetic Map	1	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC131864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U32575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020251 ⟹ ENSRNOP00000020251

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	29,091,298 - 29,122,045 (+)	Ensembl
Rnor_6.0 Ensembl	1	31,700,953 - 31,731,700 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077740 ⟹ ENSRNOP00000072705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	29,091,294 - 29,122,045 (+)	Ensembl
Rnor_6.0 Ensembl	1	31,702,485 - 31,731,815 (+)	Ensembl

RefSeq Acc Id:

NM_001024964 ⟹ NP_001020135

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	30,919,875 - 30,950,622 (+)	NCBI
mRatBN7.2	1	29,091,298 - 29,122,047 (+)	NCBI
Rnor_6.0	1	31,700,953 - 31,731,700 (+)	NCBI
Rnor_5.0	1	33,126,575 - 33,159,109 (+)	NCBI
RGSC_v3.4	1	29,897,536 - 29,928,281 (+)	RGD
Celera	1	27,743,063 - 27,773,955 (+)	RGD

Sequence:

show sequence

CCGGGAGGTGGAAGCAGCTGCGCGGATGTGTACCTGTGGTATGACATGTGCAAAGATTCTGCCT
GCTTTTCGACTATGAAGGAGACAGACCTGGAGGCTGTTGCAACAGCAGTCCAAAGGGTGGCTGG
GATGCTTCAGCGCCCAGACCAGCTGGACAAAGTGGAGCAGTATCGCAGAAGGGAGGCTCGGAAG
AAGGCCTCTGTGGAGGCCAGGCTAAAGGCCGCAATCCAGTCTCAACTAGATGGCGTCCGCACAG
GCCTAAGCCAACTGCACAATGCACTGAATGATGTCAAGGATATCCAGCAGTCACTGGCTGATGT
GAGCAAGGACTGGAGGCAGAGCATCAACACCATCGAGAGTCTCAAGGACGTAAAAGACGCAGTG
GTGCAGCACAGCCAGCTGGCTGCAGCTGTGGAGAACCTCAAGAACATATTCTCTGTGCCTGAGA
TTGTGAGGGAGACCCAAGATCTCATCGAGCAAGGGGCTCTCCTGCAGGCCCACCGGAAGCTAAT
GGATCTGGAGTGCTCCCGGGATGGGCTAATGTGTGAGCAGTACCGCATGGACAGTGGGAACAAA
CGGGACATGACCCTCATTCATGGCTACTTCGGTAGCACACAGGGGCTCTCTGACGAGCTGGCCA
AGCAGCTGTGGATGGTGCTGCAAAGATCGCTGGTCACTGTCCGCCGGGATCCCACCTTGCTGGT
CTCCGTGGTCAGGATCATTGAAAGGGAAGAAAAAATTGACAGGCGGATACTTGATCGAAAAAAG
CAAACTGGGTTTGTTCCTCCTGGAAGGCCCAAAAACTGGAAGGAAAAAATGTTTGCCGTCTTGG
ACAGAACTGTGACGACTAGAATCGAAGGCACGCAGGCGGACACCAGAGAATCTGACAAGATGTG
GCTCGTGCGCCACCTGGAGATCATTAGGAAGTACGTCCTGGATGACCTCGTCATCGCCAAGAAC
CTGCTGGTGCAGTGCTTCCCTCCTCACTATGACATCTTTAAGAACCTCCTGAGCATGTACCACC
AGGCCTTGAGCATTCGGATGCAGGACCTCGCCTCAGAGGACCTTGAGGCCAACGAGATTGTGAG
CCTCTTGACCTGGGTCCTAAATACCTACACCAGTGCAGAGATGATGGGGAATGTGGAGCTGGCC
CCAGAGGTGGACGTTAATGCCCTGGAACCGCTCCTCTCACCAAACGTGGTCTCTGAGCTGCTCG
ACACATACATGTCAACACTCACGTCCAACATCATTGCCTGGCTTCGGAAAGCACTGGAGACAGA
CAAGAAAGACTGGAGCAAAGAGACGGAGCCGGAAGCAGACCAGGACGGCTATTATCAGACGACA
CTTCCTGCCATTGTATTCCAGATGTTTGAACAGAATCTTCAAGTTGCTGCTCAAATAAGTGAAG
ATTTGAAAACAAAGGTATTAGTTTTGTGTCTTCAGCAAATGAATTCTTTCCTAAGTAGATACAA
AGAGGAAGCCCAGCTTTACAAAGAGGAGCACCTGAGAAACCGGCAGCACCCACACTGTTACGTG
CAGTACATGGTCGCCATCATCAATAACTGCCAGACCTTCAAAGAATCCATCATCAGTCTGAAAA
GAAAATACCTAAAACCCGAAACAGAGGAAAGCCTGTGTCAGAGTCAGCCCAGCATGGATGGGAT
TCTAGATGCCATTGCTAAGGAAGGCTGCAGCAGTCTGCTAGAGGAGGTCTTCCTGGATCTAGAG
CAACATCTGAATGAGCTAATGACAAAGAAGTGGATGTTAGGATCAAATGCTGTGGACATCATCT
GTGTCACCGTAGAAGACTACTTCAATGACTTCGCCAAAATTAAAAAGCCATACAAAAAGAGGAT
GACAGCTGAGGCACACAGGCGTGTGGTGGTGGAATACCTGCGGGCTGTCATGCAGAAGCGTATT
TCCTTTCGGAGTGCTGAAGAGCGCAAGGAGGGTGCTGAGAAGATGGTCAGAGAGGCGGAACAGC
TCCGCTTCCTGTTCCGGAAGCTGGCATCTGGATTTGGTGAGGATGCAGATGGACACTGTGACAC
AATCGTTGCAGTGGCAGAGGTCATTAAGCTCACGGACCCGTCTCTGCTCTACCTAGAAGTCTCA
ACTCTGGTCAGCAAATATCCAGACATCAGAGATGACCATATTGGTGCGCTGCTGGCACTGCGAG
GAGACGCCAGCCGGGACATGAAGCAGACCATCATGGAGACACTGGAGCAGGGCCCCATGCAAGC
GAGCCCCAACTATGTGCCCATCTTCCAGGAGATTGTGGTGCCCAGTCTGAACGTGGCAAAGCTC
CTTAAGTAGCCCTGTCCTCCCTGCTGTCCTGTGTGTCTTTACTTTGTGGCTTTCCTATTGTCAC
TGTATTAAAACAAAAGTCCGTCTCTTGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006227767 ⟹ XP_006227829

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	30,919,871 - 30,950,624 (+)	NCBI
mRatBN7.2	1	29,091,332 - 29,122,056 (+)	NCBI
Rnor_6.0	1	31,700,987 - 31,731,726 (+)	NCBI
Rnor_5.0	1	33,126,575 - 33,159,109 (+)	NCBI

Sequence:

show sequence

AAGCTCTGCTTTGACAGCTTTGGGTCACCGTGCGGTGGGCGGGGCGCTGGGCCCTCAACTCTGG
CACAGTGTACCCCTCAGTGGGTTTGTCCTTGGCGAGGGACAGCATCGGCCGACGTTTCTGGCGG
GAAGCGACATTCTCTGCTTGTACCTGTGGTATGACATGTGCAAAGATTCTGCCTGCTTTTCGAC
TATGAAGGAGACAGACCTGGAGGCTGTTGCAACAGCAGTCCAAAGGGTGGCTGGGATGCTTCAG
CGCCCAGACCAGCTGGACAAAGTGGAGCAGTATCGCAGAAGGGAGGCTCGGAAGAAGGCCTCTG
TGGAGGCCAGGCTAAAGGCCGCAATCCAGTCTCAACTAGATGGCGTCCGCACAGGCCTAAGCCA
ACTGCACAATGCACTGAATGATGTCAAGGATATCCAGCAGTCACTGGCTGATGTGAGCAAGGAC
TGGAGGCAGAGCATCAACACCATCGAGAGTCTCAAGGACGTAAAAGACGCAGTGGTGCAGCACA
GCCAGCTGGCTGCAGCTGTGGAGAACCTCAAGAACATATTCTCTGTGCCTGAGATTGTGAGGGA
GACCCAAGATCTCATCGAGCAAGGGGCTCTCCTGCAGGCCCACCGGAAGCTAATGGATCTGGAG
TGCTCCCGGGATGGGCTAATGTGTGAGCAGTACCGCATGGACAGTGGGAACAAACGGGACATGA
CCCTCATTCATGGCTACTTCGGTAGCACACAGGGGCTCTCTGACGAGCTGGCCAAGCAGCTGTG
GATGGTGCTGCAAAGATCGCTGGTCACTGTCCGCCGGGATCCCACCTTGCTGGTCTCCGTGGTC
AGGATCATTGAAAGGGAAGAAAAAATTGACAGGCGGATACTTGATCGAAAAAAGCAAACTGGGT
TTGTTCCTCCTGGAAGGCCCAAAAACTGGAAGGAAAAAATGTTTGCCGTCTTGGACAGAACTGT
GACGACTAGAATCGAAGGCACGCAGGCGGACACCAGAGAATCTGACAAGATGTGGCTCGTGCGC
CACCTGGAGATCATTAGGAAGTACGTCCTGGATGACCTCGTCATCGCCAAGAACCTGCTGGTGC
AGTGCTTCCCTCCTCACTATGACATCTTTAAGAACCTCCTGAGCATGTACCACCAGGCCTTGAG
CATTCGGATGCAGGACCTCGCCTCAGAGGACCTTGAGGCCAACGAGATTGTGAGCCTCTTGACC
TGGGTCCTAAATACCTACACCAGTGCAGAGATGATGGGGAATGTGGAGCTGGCCCCAGAGGTGG
ACGTTAATGCCCTGGAACCGCTCCTCTCACCAAACGTGGTCTCTGAGCTGCTCGACACATACAT
GTCAACACTCACGTCCAACATCATTGCCTGGCTTCGGAAAGCACTGGAGACAGACAAGAAAGAC
TGGAGCAAAGAGACGGAGCCGGAAGCAGACCAGGACGGCTATTATCAGACGACACTTCCTGCCA
TTGTATTCCAGATGTTTGAACAGAATCTTCAAGTTGCTGCTCAAATAAGTGAAGATTTGAAAAC
AAAGGTATTAGTTTTGTGTCTTCAGCAAATGAATTCTTTCCTAAGTAGATACAAAGAGGAAGCC
CAGCTTTACAAAGAGGAGCACCTGAGAAACCGGCAGCACCCACACTGTTACGTGCAGTACATGG
TCGCCATCATCAATAACTGCCAGACCTTCAAAGAATCCATCATCAGTCTGAAAAGAAAATACCT
AAAACCCGAAACAGAGGAAAGCCTGTGTCAGAGTCAGCCCAGCATGGATGGGATTCTAGATGCC
ATTGCTAAGGAAGGCTGCAGCAGTCTGCTAGAGGAGGTCTTCCTGGATCTAGAGCAACATCTGA
ATGAGCTAATGACAAAGAAGTGGATGTTAGGATCAAATGCTGTGGACATCATCTGTGTCACCGT
AGAAGACTACTTCAATGACTTCGCCAAAATTAAAAAGCCATACAAAAAGAGGATGACAGCTGAG
GCACACAGGCGTGTGGTGGTGGAATACCTGCGGGCTGTCATGCAGAAGCGTATTTCCTTTCGGA
GTGCTGAAGAGCGCAAGGAGGGTGCTGAGAAGATGGTCAGAGAGGCGGAACAGCTCCGCTTCCT
GTTCCGGAAGCTGGCATCTGGATTTGGTGAGGATGCAGATGGACACTGTGACACAATCGTTGCA
GTGGCAGAGGTCATTAAGCTCACGGACCCGTCTCTGCTCTACCTAGAAGTCTCAACTCTGGTCA
GCAAATATCCAGACATCAGAGATGACCATATTGGTGCGCTGCTGGCACTGCGAGGAGACGCCAG
CCGGGACATGAAGCAGACCATCATGGAGACACTGGAGCAGGGCCCCATGCAAGCGAGCCCCAAC
TATGTGCCCATCTTCCAGGAGATTGTGGTGCCCAGTCTGAACGTGGCAAAGCTCCTTAAGTAGC
CCTGTCCTCCCTGCTGTCCTGTGTGTCTTTACTTTGTGGCTTTCCTATTGTCACTGTATTAAAA
CAAAAGTCCGTCTCTTGTGCTCCGTGTGATGGCAGTTACACGT

hide sequence

RefSeq Acc Id:

XM_006227768 ⟹ XP_006227830

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	30,919,890 - 30,950,624 (+)	NCBI
mRatBN7.2	1	29,091,543 - 29,122,056 (+)	NCBI
Rnor_6.0	1	31,701,153 - 31,731,726 (+)	NCBI
Rnor_5.0	1	33,126,575 - 33,159,109 (+)	NCBI

Sequence:

show sequence

GGGTTTGTCCTCCGTGTGCGTCCCCACCCCCTATCCCCGCCTTGGTCCCTTCTGCTTCTACCCT
CAGAGTTCCCTTTTGCCCCTGAGACCGGAAATCTGACAGTCCTTTAGCTGCCTTTGGATACAGA
TTTGGTGGCGATCCCGCATTGTTTGCTTGTTTTTGTTTTTGTTTTTTTTGTTTTTGTTTTTTTG
TCCGCTCTCCTTTTGCATCTGGCTTGTAACACTGCCATTGCCTTTCACCTGCCAGCAGGAGTGG
TTGGATATTGAGTTTAATACCTAGCCCTGTAAACAGAATTATACAAGTTTTAATGTTGGGAATG
CTGAGAATAACTAAAGAGAAAAACAAACAAACAAAAAAACAAAGCCTGCAATGAATCAGCCCCG
TTAGAAGTGGTTGTGGAATCCTGTTTCTGTGGCCTGCTCAGATTTTCTTTTTGGTGTACCTGTG
GTATGACATGTGCAAAGATTCTGCCTGCTTTTCGACTATGAAGGAGACAGACCTGGAGGCTGTT
GCAACAGCAGTCCAAAGGGTGGCTGGGATGCTTCAGCGCCCAGACCAGCTGGACAAAGTGGAGC
AGTATCGCAGAAGGGAGGCTCGGAAGAAGGCCTCTGTGGAGGCCAGGCTAAAGGCCGCAATCCA
GTCTCAACTAGATGGCGTCCGCACAGGCCTAAGCCAACTGCACAATGCACTGAATGATGTCAAG
GATATCCAGCAGTCACTGGCTGATGTGAGCAAGGACTGGAGGCAGAGCATCAACACCATCGAGA
GTCTCAAGGACGTAAAAGACGCAGTGGTGCAGCACAGCCAGCTGGCTGCAGCTGTGGAGAACCT
CAAGAACATATTCTCTGTGCCTGAGATTGTGAGGGAGACCCAAGATCTCATCGAGCAAGGGGCT
CTCCTGCAGGCCCACCGGAAGCTAATGGATCTGGAGTGCTCCCGGGATGGGCTAATGTGTGAGC
AGTACCGCATGGACAGTGGGAACAAACGGGACATGACCCTCATTCATGGCTACTTCGGTAGCAC
ACAGGGGCTCTCTGACGAGCTGGCCAAGCAGCTGTGGATGGTGCTGCAAAGATCGCTGGTCACT
GTCCGCCGGGATCCCACCTTGCTGGTCTCCGTGGTCAGGATCATTGAAAGGGAAGAAAAAATTG
ACAGGCGGATACTTGATCGAAAAAAGCAAACTGGGTTTGTTCCTCCTGGAAGGCCCAAAAACTG
GAAGGAAAAAATGTTTGCCGTCTTGGACAGAACTGTGACGACTAGAATCGAAGGCACGCAGGCG
GACACCAGAGAATCTGACAAGATGTGGCTCGTGCGCCACCTGGAGATCATTAGGAAGTACGTCC
TGGATGACCTCGTCATCGCCAAGAACCTGCTGGTGCAGTGCTTCCCTCCTCACTATGACATCTT
TAAGAACCTCCTGAGCATGTACCACCAGGCCTTGAGCATTCGGATGCAGGACCTCGCCTCAGAG
GACCTTGAGGCCAACGAGATTGTGAGCCTCTTGACCTGGGTCCTAAATACCTACACCAGTGCAG
AGATGATGGGGAATGTGGAGCTGGCCCCAGAGGTGGACGTTAATGCCCTGGAACCGCTCCTCTC
ACCAAACGTGGTCTCTGAGCTGCTCGACACATACATGTCAACACTCACGTCCAACATCATTGCC
TGGCTTCGGAAAGCACTGGAGACAGACAAGAAAGACTGGAGCAAAGAGACGGAGCCGGAAGCAG
ACCAGGACGGCTATTATCAGACGACACTTCCTGCCATTGTATTCCAGATGTTTGAACAGAATCT
TCAAGTTGCTGCTCAAATAAGTGAAGATTTGAAAACAAAGGTATTAGTTTTGTGTCTTCAGCAA
ATGAATTCTTTCCTAAGTAGATACAAAGAGGAAGCCCAGCTTTACAAAGAGGAGCACCTGAGAA
ACCGGCAGCACCCACACTGTTACGTGCAGTACATGGTCGCCATCATCAATAACTGCCAGACCTT
CAAAGAATCCATCATCAGTCTGAAAAGAAAATACCTAAAACCCGAAACAGAGGAAAGCCTGTGT
CAGAGTCAGCCCAGCATGGATGGGATTCTAGATGCCATTGCTAAGGAAGGCTGCAGCAGTCTGC
TAGAGGAGGTCTTCCTGGATCTAGAGCAACATCTGAATGAGCTAATGACAAAGAAGTGGATGTT
AGGATCAAATGCTGTGGACATCATCTGTGTCACCGTAGAAGACTACTTCAATGACTTCGCCAAA
ATTAAAAAGCCATACAAAAAGAGGATGACAGCTGAGGCACACAGGCGTGTGGTGGTGGAATACC
TGCGGGCTGTCATGCAGAAGCGTATTTCCTTTCGGAGTGCTGAAGAGCGCAAGGAGGGTGCTGA
GAAGATGGTCAGAGAGGCGGAACAGCTCCGCTTCCTGTTCCGGAAGCTGGCATCTGGATTTGGT
GAGGATGCAGATGGACACTGTGACACAATCGTTGCAGTGGCAGAGGTCATTAAGCTCACGGACC
CGTCTCTGCTCTACCTAGAAGTCTCAACTCTGGTCAGCAAATATCCAGACATCAGAGATGACCA
TATTGGTGCGCTGCTGGCACTGCGAGGAGACGCCAGCCGGGACATGAAGCAGACCATCATGGAG
ACACTGGAGCAGGGCCCCATGCAAGCGAGCCCCAACTATGTGCCCATCTTCCAGGAGATTGTGG
TGCCCAGTCTGAACGTGGCAAAGCTCCTTAAGTAGCCCTGTCCTCCCTGCTGTCCTGTGTGTCT
TTACTTTGTGGCTTTCCTATTGTCACTGTATTAAAACAAAAGTCCGTCTCTTGTGCTCCGTGTG
ATGGCAGTTACACGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001020135	(Get FASTA)	NCBI Sequence Viewer
	XP_006227829	(Get FASTA)	NCBI Sequence Viewer
	XP_006227830	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA85505	(Get FASTA)	NCBI Sequence Viewer
	AAH97993	(Get FASTA)	NCBI Sequence Viewer
	EDL87678	(Get FASTA)	NCBI Sequence Viewer
	EDL87679	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072705.1
GenBank Protein	Q62825	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020135 ⟸ NM_001024964

- UniProtKB:

Q4QQU2 (UniProtKB/Swiss-Prot), Q62825 (UniProtKB/Swiss-Prot), A6JUV0 (UniProtKB/TrEMBL), A0A8L2QA79 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCKDSACFSTMKETDLEAVATAVQRVAGMLQRPDQLDKVEQYRRREARKKASVEARLKAAIQSQ
LDGVRTGLSQLHNALNDVKDIQQSLADVSKDWRQSINTIESLKDVKDAVVQHSQLAAAVENLKN
IFSVPEIVRETQDLIEQGALLQAHRKLMDLECSRDGLMCEQYRMDSGNKRDMTLIHGYFGSTQG
LSDELAKQLWMVLQRSLVTVRRDPTLLVSVVRIIEREEKIDRRILDRKKQTGFVPPGRPKNWKE
KMFAVLDRTVTTRIEGTQADTRESDKMWLVRHLEIIRKYVLDDLVIAKNLLVQCFPPHYDIFKN
LLSMYHQALSIRMQDLASEDLEANEIVSLLTWVLNTYTSAEMMGNVELAPEVDVNALEPLLSPN
VVSELLDTYMSTLTSNIIAWLRKALETDKKDWSKETEPEADQDGYYQTTLPAIVFQMFEQNLQV
AAQISEDLKTKVLVLCLQQMNSFLSRYKEEAQLYKEEHLRNRQHPHCYVQYMVAIINNCQTFKE
SIISLKRKYLKPETEESLCQSQPSMDGILDAIAKEGCSSLLEEVFLDLEQHLNELMTKKWMLGS
NAVDIICVTVEDYFNDFAKIKKPYKKRMTAEAHRRVVVEYLRAVMQKRISFRSAEERKEGAEKM
VREAEQLRFLFRKLASGFGEDADGHCDTIVAVAEVIKLTDPSLLYLEVSTLVSKYPDIRDDHIG
ALLALRGDASRDMKQTIMETLEQGPMQASPNYVPIFQEIVVPSLNVAKLLK

hide sequence

RefSeq Acc Id:	XP_006227829 ⟸ XM_006227767
- Peptide Label:	isoform X1
- UniProtKB:	Q4QQU2 (UniProtKB/Swiss-Prot), Q62825 (UniProtKB/Swiss-Prot), A6JUV0 (UniProtKB/TrEMBL), A0A8L2QA79 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCKDSACFSTMKETDLEAVATAVQRVAGMLQRPDQLDKVEQYRRREARKKASVEARLKAAIQSQ LDGVRTGLSQLHNALNDVKDIQQSLADVSKDWRQSINTIESLKDVKDAVVQHSQLAAAVENLKN IFSVPEIVRETQDLIEQGALLQAHRKLMDLECSRDGLMCEQYRMDSGNKRDMTLIHGYFGSTQG LSDELAKQLWMVLQRSLVTVRRDPTLLVSVVRIIEREEKIDRRILDRKKQTGFVPPGRPKNWKE KMFAVLDRTVTTRIEGTQADTRESDKMWLVRHLEIIRKYVLDDLVIAKNLLVQCFPPHYDIFKN LLSMYHQALSIRMQDLASEDLEANEIVSLLTWVLNTYTSAEMMGNVELAPEVDVNALEPLLSPN VVSELLDTYMSTLTSNIIAWLRKALETDKKDWSKETEPEADQDGYYQTTLPAIVFQMFEQNLQV AAQISEDLKTKVLVLCLQQMNSFLSRYKEEAQLYKEEHLRNRQHPHCYVQYMVAIINNCQTFKE SIISLKRKYLKPETEESLCQSQPSMDGILDAIAKEGCSSLLEEVFLDLEQHLNELMTKKWMLGS NAVDIICVTVEDYFNDFAKIKKPYKKRMTAEAHRRVVVEYLRAVMQKRISFRSAEERKEGAEKM VREAEQLRFLFRKLASGFGEDADGHCDTIVAVAEVIKLTDPSLLYLEVSTLVSKYPDIRDDHIG ALLALRGDASRDMKQTIMETLEQGPMQASPNYVPIFQEIVVPSLNVAKLLK hide sequence

RefSeq Acc Id:	XP_006227830 ⟸ XM_006227768
- Peptide Label:	isoform X1
- UniProtKB:	Q4QQU2 (UniProtKB/Swiss-Prot), Q62825 (UniProtKB/Swiss-Prot), A6JUV0 (UniProtKB/TrEMBL), A0A8L2QA79 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCKDSACFSTMKETDLEAVATAVQRVAGMLQRPDQLDKVEQYRRREARKKASVEARLKAAIQSQ LDGVRTGLSQLHNALNDVKDIQQSLADVSKDWRQSINTIESLKDVKDAVVQHSQLAAAVENLKN IFSVPEIVRETQDLIEQGALLQAHRKLMDLECSRDGLMCEQYRMDSGNKRDMTLIHGYFGSTQG LSDELAKQLWMVLQRSLVTVRRDPTLLVSVVRIIEREEKIDRRILDRKKQTGFVPPGRPKNWKE KMFAVLDRTVTTRIEGTQADTRESDKMWLVRHLEIIRKYVLDDLVIAKNLLVQCFPPHYDIFKN LLSMYHQALSIRMQDLASEDLEANEIVSLLTWVLNTYTSAEMMGNVELAPEVDVNALEPLLSPN VVSELLDTYMSTLTSNIIAWLRKALETDKKDWSKETEPEADQDGYYQTTLPAIVFQMFEQNLQV AAQISEDLKTKVLVLCLQQMNSFLSRYKEEAQLYKEEHLRNRQHPHCYVQYMVAIINNCQTFKE SIISLKRKYLKPETEESLCQSQPSMDGILDAIAKEGCSSLLEEVFLDLEQHLNELMTKKWMLGS NAVDIICVTVEDYFNDFAKIKKPYKKRMTAEAHRRVVVEYLRAVMQKRISFRSAEERKEGAEKM VREAEQLRFLFRKLASGFGEDADGHCDTIVAVAEVIKLTDPSLLYLEVSTLVSKYPDIRDDHIG ALLALRGDASRDMKQTIMETLEQGPMQASPNYVPIFQEIVVPSLNVAKLLK hide sequence

Ensembl Acc Id:

ENSRNOP00000072705 ⟸ ENSRNOT00000077740

Ensembl Acc Id:

ENSRNOP00000020251 ⟸ ENSRNOT00000020251

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62825-F1-model_v2	AlphaFold	Q62825	1-755	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689557

Promoter ID:

EPDNEW_R82

Type:

multiple initiation site

Name:

Exoc3_1

Description:

exocyst complex component 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	31,700,938 - 31,700,998	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621790	AgrOrtholog
BioCyc Gene	G2FUF-61940	BioCyc
Ensembl Genes	ENSRNOG00000039776	Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000077740.2	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.357.50	UniProtKB/Swiss-Prot
	1.10.357.70	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7446619	IMAGE-MGC_LOAD
InterPro	EXOC3/Sec6	UniProtKB/Swiss-Prot
	EXOC3/Sec6_C	UniProtKB/Swiss-Prot
KEGG Report	rno:252881	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116137	IMAGE-MGC_LOAD
NCBI Gene	252881	ENTREZGENE
PANTHER	EXOCYST COMPLEX COMPONENT 3	UniProtKB/Swiss-Prot
	PTHR21292	UniProtKB/Swiss-Prot
Pfam	Sec6	UniProtKB/Swiss-Prot
PhenoGen	Exoc3	PhenoGen
RatGTEx	ENSRNOG00000039776	RatGTEx
UniProt	A0A8L2QA79	ENTREZGENE, UniProtKB/TrEMBL
	A6JUV0	ENTREZGENE, UniProtKB/TrEMBL
	A6JUV2_RAT	UniProtKB/TrEMBL
	EXOC3_RAT	UniProtKB/Swiss-Prot
	Q4QQU2	ENTREZGENE
	Q62825	ENTREZGENE
UniProt Secondary	Q4QQU2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Exoc3	exocyst complex component 3	Sec6l1	SEC6-like 1 (S. cerevisiae)	Symbol and Name updated	1299863	APPROVED
2004-09-10	Sec6l1	SEC6-like 1 (S. cerevisiae)	Sec6	RSec6 protein	Symbol and Name updated	1299863	APPROVED
2002-08-07	Sec6	RSec6 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_homology	shows 22% amino acid identity to yeast Sec6p	633933
gene_protein	87-kDa protein	633933

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - PID (archival)