Scaper (S-phase cyclin A-associated protein in the ER) - Rat Genome Database

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Gene: Scaper (S-phase cyclin A-associated protein in the ER) Rattus norvegicus
Analyze
Symbol: Scaper
Name: S-phase cyclin A-associated protein in the ER
RGD ID: 621585
Description: Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to act upstream of or within gonad development; retina development in camera-type eye; and spermatogenesis. Predicted to be located in nucleus; ooplasm; and sperm head. Orthologous to human SCAPER (S-phase cyclin A associated protein in the ER); INTERACTS WITH 17beta-estradiol; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: KIAA1454; KIAA1454-like protein; S phase cyclin A-associated protein in the endoplasmic reticulum; Zfp291; zinc finger protein 291; Znf291
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,828,789 - 65,228,240 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl864,828,789 - 65,228,453 (-)EnsemblGRCr8
mRatBN7.2855,932,717 - 56,332,222 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,933,306 - 56,332,122 (-)EnsemblmRatBN7.2
Rnor_6.0860,127,039 - 60,593,568 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl860,126,624 - 60,570,058 (-)Ensemblrn6Rnor6.0
Rnor_5.0858,705,372 - 58,836,992 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0858,961,271 - 59,164,146 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4859,115,519 - 59,497,870 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera855,416,034 - 55,813,085 (-)NCBICelera
RGSC_v3.1859,464,458 - 59,544,779 (-)NCBI
Cytogenetic Map8q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
Dibutyl phosphate  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
glyphosate  (EXP)
ketamine  (EXP)
leflunomide  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
niclosamide  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
phenethyl caffeate  (EXP)
phenobarbital  (EXP)
potassium chromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nuclear speck  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA,ISO)
ooplasm  (ISO)
sperm head  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25931508  


Genomics

Comparative Map Data
Scaper
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,828,789 - 65,228,240 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl864,828,789 - 65,228,453 (-)EnsemblGRCr8
mRatBN7.2855,932,717 - 56,332,222 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,933,306 - 56,332,122 (-)EnsemblmRatBN7.2
Rnor_6.0860,127,039 - 60,593,568 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl860,126,624 - 60,570,058 (-)Ensemblrn6Rnor6.0
Rnor_5.0858,705,372 - 58,836,992 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0858,961,271 - 59,164,146 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4859,115,519 - 59,497,870 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera855,416,034 - 55,813,085 (-)NCBICelera
RGSC_v3.1859,464,458 - 59,544,779 (-)NCBI
Cytogenetic Map8q24NCBI
SCAPER
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381576,347,904 - 76,905,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1576,347,904 - 76,905,970 (-)Ensemblhg38GRCh38
GRCh371576,640,245 - 77,197,681 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361574,427,592 - 74,963,247 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341574,427,591 - 74,963,247NCBI
Celera1553,566,747 - 54,107,576 (-)NCBICelera
Cytogenetic Map15q24.3NCBI
HuRef1553,397,503 - 53,933,142 (-)NCBIHuRef
CHM1_11576,759,947 - 77,294,404 (-)NCBICHM1_1
T2T-CHM13v2.01574,219,067 - 74,764,374 (-)NCBIT2T-CHM13v2.0
Scaper
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39955,457,163 - 55,845,505 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl955,457,163 - 55,845,403 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38955,549,879 - 55,938,221 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl955,549,879 - 55,938,119 (-)Ensemblmm10GRCm38
MGSCv37955,397,690 - 55,785,922 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36955,348,016 - 55,736,258 (-)NCBIMGSCv36mm8
Celera952,792,038 - 53,172,025 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.13NCBI
Scaper
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554501,480,287 - 1,812,082 (-)Ensembl
ChiLan1.0NW_0049554501,479,983 - 1,821,681 (-)NCBIChiLan1.0ChiLan1.0
SCAPER
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21665,549,051 - 66,117,913 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11569,713,453 - 70,282,354 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01555,263,970 - 55,830,877 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11574,855,175 - 75,419,675 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1574,855,612 - 75,377,042 (-)EnsemblpanPan2panpan1.1
SCAPER
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13039,380,315 - 39,812,030 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3039,388,192 - 39,812,046 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3039,240,370 - 39,671,663 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03039,582,447 - 40,016,144 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3039,582,469 - 40,016,129 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13039,530,410 - 39,902,122 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03039,579,237 - 40,010,871 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03039,816,412 - 40,248,871 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Scaper
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640117,566,417 - 117,986,576 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647135,416,571 - 35,835,048 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647135,414,507 - 35,834,438 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCAPER
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl756,583,160 - 57,011,914 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1756,583,247 - 57,012,312 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2761,461,469 - 61,746,070 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCAPER
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1266,400,083 - 6,934,573 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048134,788,367 - 135,340,442 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scaper
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248941,468,299 - 1,847,784 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248941,468,294 - 1,847,661 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Scaper
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1849,619,016 - 49,884,259 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Scaper
2427 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:162
Count of miRNA genes:104
Interacting mature miRNAs:113
Transcripts:ENSRNOT00000009169, ENSRNOT00000009385
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)85076395195763951Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)85158969999045312Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85899169791341052Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)863404444108404444Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84961020468373388Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)850763951107970527Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84961020494610204Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)84924517894245178Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
631216Stl9Serum triglyceride level QTL 94.710.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)85076395167219641Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)84924517894245178Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85899169791341052Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)862848139107848139Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)858337123103337123Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)862848139107848139Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1331804Cm30Cardiac mass QTL 303.77443heart mass (VT:0007028)heart wet weight (CMO:0000069)862970527107970527Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)862848139107848139Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)862848139107848139Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)862848139107848139Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)862848139107848139Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)860248093105248093Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85899169791341052Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)862848139107848139Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)855428416107963099Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)862963099107963099Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)862848139107848139Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)862982864107982864Rat

Markers in Region
D8Rat148  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8864,912,628 - 64,912,757 (+)Marker Load Pipeline
mRatBN7.2856,016,566 - 56,016,695 (+)MAPPERmRatBN7.2
Rnor_6.0860,211,494 - 60,211,622NCBIRnor6.0
Rnor_5.0858,789,453 - 58,789,581UniSTSRnor5.0
RGSC_v3.4859,199,737 - 59,199,865UniSTSRGSC3.4
RGSC_v3.4859,199,736 - 59,199,865RGDRGSC3.4
Celera855,499,459 - 55,499,587UniSTS
RGSC_v3.1859,218,790 - 59,218,919RGD
Cytogenetic Map8q24UniSTS
D8Got84  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2856,016,411 - 56,016,704 (+)MAPPERmRatBN7.2
Rnor_6.0860,211,339 - 60,211,631NCBIRnor6.0
Rnor_5.0858,789,298 - 58,789,590UniSTSRnor5.0
RGSC_v3.4859,199,581 - 59,199,874RGDRGSC3.4
RGSC_v3.4859,199,582 - 59,199,874UniSTSRGSC3.4
Celera855,499,304 - 55,499,596UniSTS
RGSC_v3.1859,218,636 - 59,218,928RGD
RH 3.4 Map8623.5UniSTS
RH 3.4 Map8623.5RGD
RH 2.0 Map8485.2RGD
Cytogenetic Map8q24UniSTS
D8Got82  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8865,105,693 - 65,105,844 (+)Marker Load Pipeline
mRatBN7.2856,209,642 - 56,209,793 (+)MAPPERmRatBN7.2
Rnor_6.0860,471,908 - 60,472,058NCBIRnor6.0
Rnor_5.0859,046,529 - 59,046,679UniSTSRnor5.0
RGSC_v3.4859,395,431 - 59,395,582RGDRGSC3.4
RGSC_v3.4859,395,432 - 59,395,582UniSTSRGSC3.4
Celera855,691,062 - 55,691,212UniSTS
RGSC_v3.1859,414,486 - 59,414,636RGD
RH 3.4 Map8627.3RGD
RH 3.4 Map8627.3UniSTS
RH 2.0 Map8485.3RGD
Cytogenetic Map8q24UniSTS
RH132418  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2855,933,511 - 55,933,707 (+)MAPPERmRatBN7.2
Rnor_6.0860,127,433 - 60,127,628NCBIRnor6.0
Rnor_5.0858,705,766 - 58,705,961UniSTSRnor5.0
RGSC_v3.4859,116,318 - 59,116,513UniSTSRGSC3.4
Celera855,416,428 - 55,416,623UniSTS
RH 3.4 Map8621.9UniSTS
Cytogenetic Map8q24UniSTS
RH134204  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2855,933,005 - 55,933,185 (+)MAPPERmRatBN7.2
Rnor_6.0860,126,927 - 60,127,106NCBIRnor6.0
Rnor_5.0858,705,260 - 58,705,439UniSTSRnor5.0
RGSC_v3.4859,115,812 - 59,115,991UniSTSRGSC3.4
Celera855,415,922 - 55,416,101UniSTS
RH 3.4 Map8625.0UniSTS
Cytogenetic Map8q24UniSTS
RH137810  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2856,028,111 - 56,028,294 (+)MAPPERmRatBN7.2
Rnor_6.0860,223,050 - 60,223,232NCBIRnor6.0
Rnor_5.0858,800,759 - 58,800,941UniSTSRnor5.0
RGSC_v3.4859,211,774 - 59,211,956UniSTSRGSC3.4
Celera855,510,962 - 55,511,144UniSTS
RH 3.4 Map6786.8UniSTS
Cytogenetic Map8q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001070332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063264796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH010611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000009169   ⟹   ENSRNOP00000009168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl864,828,789 - 65,208,587 (-)Ensembl
mRatBN7.2 Ensembl855,933,306 - 56,332,122 (-)Ensembl
Rnor_6.0 Ensembl860,126,624 - 60,570,058 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095176   ⟹   ENSRNOP00000080346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl864,828,789 - 65,205,203 (-)Ensembl
mRatBN7.2 Ensembl855,933,306 - 56,332,122 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000171938   ⟹   ENSRNOP00000110812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl864,828,789 - 65,228,453 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000172947   ⟹   ENSRNOP00000112661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl864,828,789 - 65,205,203 (-)Ensembl
RefSeq Acc Id: NM_001427719   ⟹   NP_001414648
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8864,828,789 - 65,228,179 (-)NCBI
RefSeq Acc Id: XM_008766363   ⟹   XP_008764585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8864,829,378 - 65,228,240 (-)NCBI
mRatBN7.2855,932,717 - 56,332,221 (-)NCBI
Rnor_6.0860,127,039 - 60,593,568 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039082383   ⟹   XP_038938311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8864,829,378 - 65,228,240 (-)NCBI
mRatBN7.2855,932,717 - 56,332,222 (-)NCBI
RefSeq Acc Id: XM_039082384   ⟹   XP_038938312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8864,829,378 - 65,227,733 (-)NCBI
mRatBN7.2855,932,717 - 56,329,499 (-)NCBI
RefSeq Acc Id: XM_039082386   ⟹   XP_038938314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8864,829,378 - 65,228,240 (-)NCBI
mRatBN7.2855,932,717 - 56,332,221 (-)NCBI
RefSeq Acc Id: XM_039082387   ⟹   XP_038938315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8864,868,699 - 65,228,240 (-)NCBI
mRatBN7.2855,972,719 - 56,332,222 (-)NCBI
RefSeq Acc Id: XM_039082388   ⟹   XP_038938316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8864,829,378 - 65,043,099 (-)NCBI
mRatBN7.2855,932,717 - 56,148,056 (-)NCBI
RefSeq Acc Id: XM_039082391   ⟹   XP_038938319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8864,829,378 - 64,869,445 (-)NCBI
mRatBN7.2855,932,717 - 55,973,388 (-)NCBI
RefSeq Acc Id: XM_063264793   ⟹   XP_063120863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8864,829,378 - 65,217,559 (-)NCBI
RefSeq Acc Id: XM_063264794   ⟹   XP_063120864
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8864,829,378 - 65,225,669 (-)NCBI
RefSeq Acc Id: XM_063264795   ⟹   XP_063120865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8865,004,285 - 65,228,240 (-)NCBI
RefSeq Acc Id: XM_063264796   ⟹   XP_063120866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8864,829,378 - 64,866,984 (-)NCBI
RefSeq Acc Id: XP_008764585   ⟸   XM_008766363
- Peptide Label: isoform X2
- UniProtKB: F1LRM0 (UniProtKB/TrEMBL),   A6J4P9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009168   ⟸   ENSRNOT00000009169
RefSeq Acc Id: XP_038938311   ⟸   XM_039082383
- Peptide Label: isoform X1
- UniProtKB: A6J4P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938314   ⟸   XM_039082386
- Peptide Label: isoform X3
- UniProtKB: A6J4P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938312   ⟸   XM_039082384
- Peptide Label: isoform X1
- UniProtKB: A6J4P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938316   ⟸   XM_039082388
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038938319   ⟸   XM_039082391
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038938315   ⟸   XM_039082387
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000080346   ⟸   ENSRNOT00000095176
RefSeq Acc Id: NP_001414648   ⟸   NM_001427719
- UniProtKB: A6J4P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120864   ⟸   XM_063264794
- Peptide Label: isoform X2
- UniProtKB: F1LRM0 (UniProtKB/TrEMBL),   A6J4P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120863   ⟸   XM_063264793
- Peptide Label: isoform X1
- UniProtKB: A6J4P9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120866   ⟸   XM_063264796
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063120865   ⟸   XM_063264795
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000112661   ⟸   ENSRNOT00000172947
Ensembl Acc Id: ENSRNOP00000110812   ⟸   ENSRNOT00000171938
Protein Domains
S phase cyclin A-associated protein in the   U1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LRM0-F1-model_v2 AlphaFold F1LRM0 1-1396 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621585 AgrOrtholog
BioCyc Gene G2FUF-30367 BioCyc
Ensembl Genes ENSRNOG00000006864 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009169.9 UniProtKB/TrEMBL
  ENSRNOT00000095176.2 UniProtKB/TrEMBL
  ENSRNOT00000171938 ENTREZGENE
  ENSRNOT00000171938.1 UniProtKB/TrEMBL
  ENSRNOT00000172947.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro SCAPER_N UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
  Znf_U1 UniProtKB/TrEMBL
KEGG Report rno:117521 UniProtKB/TrEMBL
NCBI Gene 117521 ENTREZGENE
PANTHER S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM UniProtKB/TrEMBL
  S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM UniProtKB/TrEMBL
Pfam SCAPER_N UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PhenoGen Scaper PhenoGen
RatGTEx ENSRNOG00000006864 RatGTEx
SMART ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5ZQH8_RAT UniProtKB/TrEMBL
  A0ABK0M1U7_RAT UniProtKB/TrEMBL
  A0ABK0MB40_RAT UniProtKB/TrEMBL
  A6J4P9 ENTREZGENE, UniProtKB/TrEMBL
  F1LRM0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-05 Scaper  S-phase cyclin A-associated protein in the ER  Znf291  zinc finger protein 291  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Znf291  zinc finger protein 291    KIAA1454-like protein  Name updated 1299863 APPROVED
2002-08-07 Znf291  KIAA1454-like protein      Symbol and Name status set to provisional 70820 PROVISIONAL