SCAPER (S-phase cyclin A associated protein in the ER) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SCAPER (S-phase cyclin A associated protein in the ER) Sus scrofa
Analyze
Symbol: SCAPER
Name: S-phase cyclin A associated protein in the ER
RGD ID: 14275622
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); zinc ion binding (inferred); INVOLVED IN antral ovarian follicle growth (ortholog); ovarian follicle development (ortholog); retina development in camera-type eye (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome 1 (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nuclear speck (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: S phase cyclin A-associated protein in the endoplasmic reticulum
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl756,583,160 - 57,011,914 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1756,583,247 - 57,012,312 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2761,461,469 - 61,746,070 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
nuclear speck  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)
ooplasm  (IEA)
sperm head  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
SCAPER
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl756,583,160 - 57,011,914 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1756,583,247 - 57,012,312 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2761,461,469 - 61,746,070 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCAPER
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381576,347,904 - 76,905,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1576,347,904 - 76,905,444 (-)EnsemblGRCh38hg38GRCh38
GRCh371576,640,245 - 77,197,681 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361574,427,592 - 74,963,247 (-)NCBINCBI36Build 36hg18NCBI36
Build 341574,427,591 - 74,963,247NCBI
Celera1553,566,747 - 54,107,576 (-)NCBICelera
Cytogenetic Map15q24.3NCBI
HuRef1553,397,503 - 53,933,142 (-)NCBIHuRef
CHM1_11576,759,947 - 77,294,404 (-)NCBICHM1_1
T2T-CHM13v2.01574,219,067 - 74,764,374 (-)NCBIT2T-CHM13v2.0
Scaper
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39955,457,163 - 55,845,505 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl955,457,163 - 55,845,403 (-)EnsemblGRCm39 Ensembl
GRCm38955,549,879 - 55,938,221 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl955,549,879 - 55,938,119 (-)EnsemblGRCm38mm10GRCm38
MGSCv37955,397,690 - 55,785,922 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36955,348,016 - 55,736,258 (-)NCBIMGSCv36mm8
Celera952,792,038 - 53,172,025 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.13NCBI
Scaper
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,828,789 - 65,228,240 (-)NCBIGRCr8
mRatBN7.2855,932,717 - 56,332,222 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,933,306 - 56,332,122 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0860,127,039 - 60,593,568 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl860,126,624 - 60,570,058 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0858,705,372 - 58,836,992 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0858,961,271 - 59,164,146 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4859,115,519 - 59,497,870 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1859,464,458 - 59,544,779 (-)NCBI
Celera855,416,034 - 55,813,085 (-)NCBICelera
Cytogenetic Map8q24NCBI
Scaper
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554501,480,287 - 1,812,082 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554501,479,983 - 1,821,681 (-)NCBIChiLan1.0ChiLan1.0
SCAPER
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21665,549,051 - 66,117,913 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11569,713,453 - 70,282,354 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01555,263,970 - 55,830,877 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11574,855,175 - 75,419,675 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1574,855,612 - 75,377,042 (-)Ensemblpanpan1.1panPan2
SCAPER
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13039,380,315 - 39,812,030 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3039,388,192 - 39,812,046 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3039,240,370 - 39,671,663 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03039,582,447 - 40,016,144 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3039,582,469 - 40,016,129 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13039,530,410 - 39,902,122 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03039,579,237 - 40,010,871 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03039,816,412 - 40,248,871 (+)NCBIUU_Cfam_GSD_1.0
Scaper
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640117,566,417 - 117,986,576 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647135,416,571 - 35,835,048 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647135,414,507 - 35,834,438 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCAPER
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1266,400,083 - 6,934,573 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048134,788,367 - 135,340,442 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scaper
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248941,468,299 - 1,847,784 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248941,468,294 - 1,847,661 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SCAPER
6002 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 3 3 22 1
Low 9 3 2 2 1 2 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000002090   ⟹   ENSSSCP00000002040
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl756,583,253 - 57,011,846 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000040228   ⟹   ENSSSCP00000038079
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl756,583,160 - 57,011,902 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000056817   ⟹   ENSSSCP00000044592
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl756,583,253 - 57,011,846 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000072676   ⟹   ENSSSCP00000063576
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl756,583,151 - 56,955,147 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000079135   ⟹   ENSSSCP00000068919
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl756,972,186 - 57,011,852 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000082477   ⟹   ENSSSCP00000071611
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl756,627,522 - 57,011,899 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000090036   ⟹   ENSSSCP00000063298
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl756,586,714 - 57,011,914 (-)Ensembl
RefSeq Acc Id: XM_021099012   ⟹   XP_020954671
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1756,583,247 - 57,012,012 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099013   ⟹   XP_020954672
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1756,583,247 - 57,011,841 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099014   ⟹   XP_020954673
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1756,583,247 - 57,012,312 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099015   ⟹   XP_020954674
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1756,583,247 - 56,939,211 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099016   ⟹   XP_020954675
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1756,583,247 - 56,939,227 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020954673   ⟸   XM_021099014
- Peptide Label: isoform X2
- UniProtKB: F1SJ94 (UniProtKB/TrEMBL),   A0A4X1TSG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954671   ⟸   XM_021099012
- Peptide Label: isoform X1
- UniProtKB: A0A287A2B1 (UniProtKB/TrEMBL),   A0A4X1TUK8 (UniProtKB/TrEMBL),   A0A287AL12 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954672   ⟸   XM_021099013
- Peptide Label: isoform X1
- UniProtKB: A0A287A2B1 (UniProtKB/TrEMBL),   A0A4X1TUK8 (UniProtKB/TrEMBL),   A0A287AL12 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954675   ⟸   XM_021099016
- Peptide Label: isoform X4
- UniProtKB: A0A4X1TXE9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020954674   ⟸   XM_021099015
- Peptide Label: isoform X3
- UniProtKB: A0A4X1TXE9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000038079   ⟸   ENSSSCT00000040228
RefSeq Acc Id: ENSSSCP00000063298   ⟸   ENSSSCT00000090036
RefSeq Acc Id: ENSSSCP00000002040   ⟸   ENSSSCT00000002090
RefSeq Acc Id: ENSSSCP00000068919   ⟸   ENSSSCT00000079135
RefSeq Acc Id: ENSSSCP00000044592   ⟸   ENSSSCT00000056817
RefSeq Acc Id: ENSSSCP00000063576   ⟸   ENSSSCT00000072676
RefSeq Acc Id: ENSSSCP00000071611   ⟸   ENSSSCT00000082477
Protein Domains
U1-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001865 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070012348 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002090 ENTREZGENE
  ENSSSCT00000002090.5 UniProtKB/TrEMBL
  ENSSSCT00000040228 ENTREZGENE
  ENSSSCT00000040228.3 UniProtKB/TrEMBL
  ENSSSCT00000056817 ENTREZGENE
  ENSSSCT00000056817.3 UniProtKB/TrEMBL
  ENSSSCT00000079135.2 UniProtKB/TrEMBL
  ENSSSCT00000082477.1 UniProtKB/TrEMBL
  ENSSSCT00000090036.1 UniProtKB/TrEMBL
  ENSSSCT00070024318.1 UniProtKB/TrEMBL
  ENSSSCT00070024347.1 UniProtKB/TrEMBL
  ENSSSCT00070024373.1 UniProtKB/TrEMBL
  ENSSSCT00070024388.1 UniProtKB/TrEMBL
  ENSSSCT00070024409.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Matrin/U1-like-C_Znf_C2H2 UniProtKB/TrEMBL
  SCAPER_N UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene SCAPER ENTREZGENE
PANTHER S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM UniProtKB/TrEMBL
  S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM UniProtKB/TrEMBL
Pfam SCAPER_N UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
SMART ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A287A2B1 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AL12 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TSG1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TSJ3_PIG UniProtKB/TrEMBL
  A0A4X1TUK8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TUS3_PIG UniProtKB/TrEMBL
  A0A4X1TXE9 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QG97_PIG UniProtKB/TrEMBL
  A0A5G2R3E6_PIG UniProtKB/TrEMBL
  A0A5G2R3Z9_PIG UniProtKB/TrEMBL
  F1SJ94 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92611 ENTREZGENE