SCAPER (S-phase cyclin A associated protein in the ER) - Rat Genome Database

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Gene: SCAPER (S-phase cyclin A associated protein in the ER) Chlorocebus sabaeus
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Symbol: SCAPER
Name: S-phase cyclin A associated protein in the ER
RGD ID: 18718495
Description: INVOLVED IN antral ovarian follicle growth (ortholog); ovarian follicle development (ortholog); retina development in camera-type eye (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome 1 (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: S phase cyclin A-associated protein in the endoplasmic reticulum
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1266,400,083 - 6,934,573 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048134,788,367 - 135,340,442 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
cytosol  (ISO)
nuclear speck  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)
ooplasm  (ISO)
sperm head  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SCAPER
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1266,400,083 - 6,934,573 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048134,788,367 - 135,340,442 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SCAPER
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381576,347,904 - 76,905,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1576,347,904 - 76,905,444 (-)EnsemblGRCh38hg38GRCh38
GRCh371576,640,245 - 77,197,681 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361574,427,592 - 74,963,247 (-)NCBINCBI36Build 36hg18NCBI36
Build 341574,427,591 - 74,963,247NCBI
Celera1553,566,747 - 54,107,576 (-)NCBICelera
Cytogenetic Map15q24.3NCBI
HuRef1553,397,503 - 53,933,142 (-)NCBIHuRef
CHM1_11576,759,947 - 77,294,404 (-)NCBICHM1_1
T2T-CHM13v2.01574,219,067 - 74,764,374 (-)NCBIT2T-CHM13v2.0
Scaper
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39955,457,163 - 55,845,505 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl955,457,163 - 55,845,403 (-)EnsemblGRCm39 Ensembl
GRCm38955,549,879 - 55,938,221 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl955,549,879 - 55,938,119 (-)EnsemblGRCm38mm10GRCm38
MGSCv37955,397,690 - 55,785,922 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36955,348,016 - 55,736,258 (-)NCBIMGSCv36mm8
Celera952,792,038 - 53,172,025 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.13NCBI
Scaper
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8864,828,789 - 65,228,240 (-)NCBIGRCr8
mRatBN7.2855,932,717 - 56,332,222 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl855,933,306 - 56,332,122 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0860,127,039 - 60,593,568 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl860,126,624 - 60,570,058 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0858,705,372 - 58,836,992 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0858,961,271 - 59,164,146 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4859,115,519 - 59,497,870 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1859,464,458 - 59,544,779 (-)NCBI
Celera855,416,034 - 55,813,085 (-)NCBICelera
Cytogenetic Map8q24NCBI
Scaper
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554501,480,287 - 1,812,082 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554501,479,983 - 1,821,681 (-)NCBIChiLan1.0ChiLan1.0
SCAPER
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21665,549,051 - 66,117,913 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11569,713,453 - 70,282,354 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01555,263,970 - 55,830,877 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11574,855,175 - 75,419,675 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1574,855,612 - 75,377,042 (-)Ensemblpanpan1.1panPan2
SCAPER
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13039,380,315 - 39,812,030 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3039,388,192 - 39,812,046 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3039,240,370 - 39,671,663 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03039,582,447 - 40,016,144 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3039,582,469 - 40,016,129 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13039,530,410 - 39,902,122 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03039,579,237 - 40,010,871 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03039,816,412 - 40,248,871 (+)NCBIUU_Cfam_GSD_1.0
Scaper
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640117,566,417 - 117,986,576 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647135,416,571 - 35,835,048 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647135,414,507 - 35,834,438 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCAPER
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl756,583,160 - 57,011,914 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1756,583,247 - 57,012,312 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2761,461,469 - 61,746,070 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Scaper
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248941,468,299 - 1,847,784 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248941,468,294 - 1,847,661 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038010211   ⟹   XP_037866139
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048134,788,367 - 135,340,442 (-)NCBI
RefSeq Acc Id: XM_038010212   ⟹   XP_037866140
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048134,788,367 - 135,340,083 (-)NCBI
RefSeq Acc Id: XM_038010213   ⟹   XP_037866141
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048134,788,367 - 135,320,404 (-)NCBI
RefSeq Acc Id: XM_038010214   ⟹   XP_037866142
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048134,788,367 - 135,340,263 (-)NCBI
RefSeq Acc Id: XM_038010215   ⟹   XP_037866143
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048134,788,367 - 135,340,442 (-)NCBI
RefSeq Acc Id: XM_038010216   ⟹   XP_037866144
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048134,788,367 - 135,340,442 (-)NCBI
RefSeq Acc Id: XM_038010217   ⟹   XP_037866145
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048134,788,367 - 135,340,083 (-)NCBI
RefSeq Acc Id: XM_038010218   ⟹   XP_037866146
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666048134,816,850 - 135,340,442 (-)NCBI
RefSeq Acc Id: XP_037866143   ⟸   XM_038010215
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037866144   ⟸   XM_038010216
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037866139   ⟸   XM_038010211
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037866142   ⟸   XM_038010214
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037866145   ⟸   XM_038010217
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037866140   ⟸   XM_038010212
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037866141   ⟸   XM_038010213
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037866146   ⟸   XM_038010218
- Peptide Label: isoform X5


Additional Information

Database Acc Id Source(s)
NCBI Gene SCAPER ENTREZGENE