Il2rg (interleukin 2 receptor subunit gamma) - Rat Genome Database

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Gene: Il2rg (interleukin 2 receptor subunit gamma) Rattus norvegicus
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Symbol: Il2rg (Ensembl: Cxhxorf65)
Name: interleukin 2 receptor subunit gamma (Ensembl:similar to human chromosome X open reading frame 65)
RGD ID: 621466
Description: Predicted to enable coreceptor activity; interleukin-15 receptor activity; and interleukin-2 binding activity. Predicted to be involved in cellular homeostasis; cytokine-mediated signaling pathway; and positive regulation of phagocytosis. Predicted to act upstream of or within positive regulation of gene expression and positive regulation of lymphocyte differentiation. Predicted to be located in external side of plasma membrane and nucleoplasm. Predicted to be active in plasma membrane. Used to study X-linked severe combined immunodeficiency and combined T cell and B cell immunodeficiency. Human ortholog(s) of this gene implicated in X-linked severe combined immunodeficiency; combined T cell and B cell immunodeficiency; and severe combined immunodeficiency. Orthologous to human IL2RG (interleukin 2 receptor subunit gamma); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-2 signaling pathway; interleukin-4 signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ab2-183; Cd132; cytokine receptor common subunit gamma; interleukin 2 receptor, gamma (severe combined immunodeficiency); interleukin 2 receptor, gamma chain
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Il2rgem2Mcwi   Il2rgem1Mcwi   Il2rgem3Mcwi   Il2rgem1Kyo   Il2rgem2Kyo   Il2rgem1Hina   Il2rgem6Kyo   Il2rgem5Kyo   Il2rgem1Iexas   Il2rgem4Kyo   Il2rgem3Kyo   Il2rgem1Ang   Il2rgem7Kyo  
Genetic Models: SS-Chr 3BN.SS-(D3Rat164-D3Rat218).Il2rgem1/Mcwi SS-Chr 3BN.SS-(D3Rat 86-D3Rat218).Il2rgem1/Mcwi SS-Chr 3BN.SS-(D3Mgh13-D3Rat218).Il2rgem1/Mcwi SS-Il2rgem1Mcwi SD-Il2rgem2Mcwi SD-Il2rgem3Mcwi SS-Chr 3BN.Il2rgem1Mcwi/Mcwi SD-Rag2em3McwiIl2rgem2Mcwi SD-Il2rgem1Ang TM-Il2rgem5Kyo TM-Il2rgem4Kyo F344-Il2rgem3Kyo F344-Il2rgem2Kyo F344-Il2rgem1Kyo F344-Il2rgem1IexasRag2em1Iexas F344-Il2rgem1Iexas W-Il2rgem1Hina F344-Il2rgem7Kyo TM-Prkdcem4KyoIl2rgem5Kyo F344-Prkdcem2KyoIl2rgem6Kyo
Is Marker For: Strains:   F344-Prkdcem2KyoIl2rgem6Kyo   TM-Prkdcem4KyoIl2rgem5Kyo  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X70,435,340 - 70,439,052 (-)NCBIGRCr8
mRatBN7.2X66,395,330 - 66,399,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX66,392,542 - 66,399,823 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX67,878,691 - 67,882,351 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X71,379,079 - 71,382,739 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X68,939,986 - 68,943,646 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X71,165,378 - 71,169,078 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX71,162,585 - 71,169,865 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X72,017,856 - 72,021,516 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X89,342,055 - 89,345,715 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X89,416,495 - 89,419,068 (-)NCBI
CeleraX66,751,239 - 66,754,899 (-)NCBICelera
Cytogenetic MapXq22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Il2rgRatcombined T cell and B cell immunodeficiency  IMP 2316325 RGD 
Il2rgRatCOVID-19 severityISOIL2RG (Homo sapiens)32716368protein:increased expression:serum (human)RGD 
Il2rgRatImmune Deficiency Disease  IMP 13628403 RGD 
Il2rgRatsevere combined immunodeficiency  ISOIL2RG (Homo sapiens)1600009X-linked SCID and OMIM:300400RGD 
Il2rgRatX-linked severe combined immunodeficiency  IMP 2316325 RGD 
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Original Reference(s)
Il2rgRatautistic disorder  ISOIL2RG (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
Il2rgRatautosomal hemophilia A  ISOIL2RG (Homo sapiens)8554872ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA AClinVarPMID:31690835
Il2rgRatcombined immunodeficiency  ISOIL2RG (Homo sapiens)8554872ClinVar Annotator: match by term: Combined immunodeficiencyClinVarPMID:25741868
Il2rgRatcombined T cell and B cell immunodeficiency  ISOIL2RG (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10792291 more ...
Il2rgRatfactor VIII deficiency  ISOIL2RG (Homo sapiens)8554872ClinVar Annotator: match by term: Factor 8 deficiency and congenitalClinVarPMID:31690835
Il2rgRatFG Syndrome 1  ISOIL2RG (Homo sapiens)8554872ClinVar Annotator: match by term: FG syndrome 1ClinVarPMID:28492532
Il2rgRatgenetic disease  ISOIL2RG (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:10794431 more ...
Il2rgRatsyndromic X-linked intellectual disability Lubs type  ISOIL2RG (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs typeClinVarPMID:25741868
Il2rgRatX-linked severe combined immunodeficiency  ISOIL2RG (Homo sapiens)8554872ClinVar Annotator: match by term: X-linked severe combined immunodeficiencyClinVarPMID:10444186 more ...
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Original Reference(s)
Il2rgRatcombined T cell and B cell immunodeficiency  ISOIL2RG (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Il2rgRatExperimental Liver Cirrhosis  ISOIL2RG (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Il2rgRatSezary's disease  ISOIL2RG (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26551670
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Original Reference(s)
Il2rgRatcombined T cell and B cell immunodeficiency  ISOIL2RG (Homo sapiens)7240710 OMIM 
Il2rgRatX-linked severe combined immunodeficiency  ISOIL2RG (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Il2rgRat1,2-dimethylhydrazine increases expressionISOIl2rg (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of IL2RG mRNACTDPMID:22206623
Il2rgRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of IL2RG mRNACTDPMID:25380136
Il2rgRat17beta-estradiol decreases expressionISOIl2rg (Mus musculus)6480464Estradiol results in decreased expression of IL2RG mRNACTDPMID:39298647
Il2rgRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOIl2rg (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of IL2RG mRNACTDPMID:21570461
Il2rgRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of IL2RG mRNACTDPMID:34747641
Il2rgRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOIl2rg (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of IL2RG mRNACTDPMID:17942748 and PMID:26290441
Il2rgRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOIl2rg (Mus musculus)6480464[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in decreased expression of IL2RG mRNACTDPMID:25975270
Il2rgRat4,4'-diaminodiphenylmethane increases expressionEXP 64804644 and 4'-diaminodiphenylmethane results in increased expression of IL2RG mRNACTDPMID:25380136
Il2rgRat4,4'-sulfonyldiphenol decreases expressionISOIl2rg (Mus musculus)6480464bisphenol S results in decreased expression of IL2RG mRNACTDPMID:39298647
Il2rgRat4-hydroxycyclophosphamide multiple interactionsEXP 6480464[afimoxifene co-treated with 4-hydroxycyclophosphamide] affects the expression of IL2RG mRNACTDPMID:25833159
Il2rgRat4-hydroxyphenyl retinamide increases expressionISOIl2rg (Mus musculus)6480464Fenretinide results in increased expression of IL2RG mRNACTDPMID:28973697
Il2rgRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of IL2RG mRNACTDPMID:30047161
Il2rgRatacetamide increases expressionEXP 6480464acetamide results in increased expression of IL2RG mRNACTDPMID:31881176
Il2rgRatacetylsalicylic acid decreases expressionISOIL2RG (Homo sapiens)6480464Aspirin results in decreased expression of IL2RG mRNACTDPMID:15928584
Il2rgRatafimoxifene multiple interactionsEXP 6480464[afimoxifene co-treated with 4-hydroxycyclophosphamide] affects the expression of IL2RG mRNACTDPMID:25833159
Il2rgRataflatoxin B1 increases methylationISOIL2RG (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of IL2RG geneCTDPMID:27153756
Il2rgRataflatoxin B1 increases expressionEXP 6480464Aflatoxin B1 results in increased expression of IL2RG mRNACTDPMID:25378103
Il2rgRatall-trans-retinoic acid increases expressionISOIL2RG (Homo sapiens)6480464Tretinoin results in increased expression of IL2RG mRNACTDPMID:33167477
Il2rgRatalpha-Zearalanol increases expressionEXP 6480464Zeranol results in increased expression of IL2RG mRNACTDPMID:35163327
Il2rgRatamitrole increases expressionEXP 6480464Amitrole results in increased expression of IL2RG mRNACTDPMID:30047161

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Biological Process
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Il2rgRatB cell differentiation acts_upstream_ofISOIl2rg (Mus musculus)1624291MGI:2429736 PMID:9252128RGDPMID:9252128
Il2rgRatB cell differentiation acts_upstream_ofIEAUniProtKB:P34902 and ensembl:ENSMUSP000000336641600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatCD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation acts_upstream_ofISOIl2rg (Mus musculus)1624291MGI:1857455 PMID:16227984RGDPMID:16227984
Il2rgRatCD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation acts_upstream_ofIEAUniProtKB:P34902 and ensembl:ENSMUSP000000336641600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatcellular homeostasis involved_inISOIL2RG (Homo sapiens)1624291 PMID:35021100RGDPMID:35021100
Il2rgRatcellular homeostasis involved_inIEAUniProtKB:P31785 and ensembl:ENSP000003633181600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatgene expression acts_upstream_of_or_withinIEAUniProtKB:Q3V2K1 and ensembl:ENSMUSP000000989101600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatgene expression acts_upstream_ofISOIl2rg (Mus musculus)1624291MGI:2429736 PMID:18958875RGDPMID:18958875
Il2rgRatgene expression acts_upstream_ofIEAUniProtKB:P34902 and ensembl:ENSMUSP000000336641600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatinterleukin-15-mediated signaling pathway involved_inISOIL2RG (Homo sapiens)1624291 PMID:15123770RGDPMID:15123770
Il2rgRatinterleukin-15-mediated signaling pathway involved_inIEAUniProtKB:P31785 and ensembl:ENSP000003633181600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatinterleukin-2-mediated signaling pathway involved_inISOIL2RG (Homo sapiens)1624291 PMID:7568005RGDPMID:7568005
Il2rgRatinterleukin-2-mediated signaling pathway involved_inIEAUniProtKB:P31785 and ensembl:ENSP000003633181600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatinterleukin-7-mediated signaling pathway involved_inISOIL2RG (Homo sapiens)1624291 PMID:8128231RGDPMID:8128231
Il2rgRatinterleukin-7-mediated signaling pathway involved_inIEAUniProtKB:P31785 and ensembl:ENSP000003633181600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatinterleukin-9-mediated signaling pathway involved_inISOIL2RG (Homo sapiens)1624291 PMID:18829468RGDPMID:18829468
Il2rgRatinterleukin-9-mediated signaling pathway involved_inIEAUniProtKB:P31785 and ensembl:ENSP000003633181600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatlymphocyte differentiation acts_upstream_ofISOIl2rg (Mus musculus)1624291MGI:5544783 PMID:23918385RGDPMID:23918385
Il2rgRatlymphocyte differentiation acts_upstream_ofIEAUniProtKB:P34902 and ensembl:ENSMUSP000000336641600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatmature B cell differentiation acts_upstream_ofIEAUniProtKB:P34902 and ensembl:ENSMUSP000000336641600115GO_REF:0000107EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
Il2rgRatcell surface located_inISOIL2RG (Homo sapiens)1624291 PMID:15123770RGDPMID:15123770
Il2rgRatcell surface located_inIEAUniProtKB:P31785 and ensembl:ENSP000003633181600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatexternal side of plasma membrane located_inISOIl2rg (Mus musculus)1624291 PMID:8262055RGDPMID:8262055
Il2rgRatexternal side of plasma membrane located_inIEAUniProtKB:P34902 and ensembl:ENSMUSP000000336641600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Il2rgRatmembrane located_inIEAInterPro:IPR0035311600115GO_REF:0000002InterProGO_REF:0000002
Il2rgRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Il2rgRatnucleoplasm located_inISOIL2RG (Homo sapiens) and UniProtKB:P31785-11624291 RGDGO_REF:0000052
Il2rgRatnucleoplasm located_inIEAUniProtKB:P31785 and ensembl:ENSP000003633181600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatplasma membrane is_active_inISOIL2RG (Homo sapiens)1624291 PMID:18829468 more ...RGDPMID:18829468 more ...
Il2rgRatplasma membrane is_active_inIEAUniProtKB:P31785 and ensembl:ENSP000003633181600115GO_REF:0000107EnsemblGO_REF:0000107
Il2rgRatplasma membrane located_inISOIL2RG (Homo sapiens) and UniProtKB:P31785-11624291 RGDGO_REF:0000052
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Molecular Function
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Imported Annotations - KEGG (archival)

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Il2rgRatcytokine mediated signaling pathway  IEA 6907045 KEGGrno:04060
Il2rgRatendocytosis pathway  IEA 6907045 KEGGrno:04144
Il2rgRatJak-Stat signaling pathway   IEA 6907045 KEGGrno:04630
Il2rgRatmeasles pathway  IEA 6907045 KEGGrno:05162
Il2rgRatprimary immunodeficiency pathway  IEA 6907045 KEGGrno:05340

Imported Annotations - PID (archival)

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Original Reference(s)
Il2rgRatinterleukin-12 signaling pathway  ISOIL2RG (Homo sapiens)6484113 PIDPID:200045
Il2rgRatinterleukin-2 signaling pathway  ISOIL2RG (Homo sapiens)6484113 PIDPID:200098
Il2rgRatinterleukin-4 signaling pathway  ISOIL2RG (Homo sapiens)6484113 PIDPID:200022
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#
Reference Title
Reference Citation
1. Screening for mutations causing X-linked severe combined immunodeficiency in the IL-2R gamma chain gene by single-strand conformation polymorphism analysis. Clark PA, etal., Hum Genet. 1995 Oct;96(4):427-32.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Correlation Between Relative Nasopharyngeal Virus RNA Load and Lymphocyte Count Disease Severity in Patients with COVID-19. Liu Y, etal., Viral Immunol. 2020 Apr 10. doi: 10.1089/vim.2020.0062.
5. Generation of knockout rats with X-linked severe combined immunodeficiency (X-SCID) using zinc-finger nucleases. Mashimo T, etal., PLoS One. 2010 Jan 25;5(1):e8870.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Generation of immunodeficient rats with Rag1 and Il2rg gene deletions and human tissue grafting models. Ménoret S, etal., Transplantation. 2018 Apr 24. doi: 10.1097/TP.0000000000002251.
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. Structural basis for binding multiple ligands by the common cytokine receptor gamma-chain. Olosz F and Malek TR, J Biol Chem 2002 Apr 5;277(14):12047-52.
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. GOA pipeline RGD automated data pipeline
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
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PMID:8262055   PMID:9252128   PMID:9916699   PMID:12477932   PMID:15123770   PMID:16227984   PMID:18958875   PMID:19946888   PMID:23918385  



Il2rg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X70,435,340 - 70,439,052 (-)NCBIGRCr8
mRatBN7.2X66,395,330 - 66,399,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX66,392,542 - 66,399,823 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX67,878,691 - 67,882,351 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X71,379,079 - 71,382,739 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X68,939,986 - 68,943,646 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X71,165,378 - 71,169,078 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX71,162,585 - 71,169,865 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X72,017,856 - 72,021,516 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X89,342,055 - 89,345,715 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X89,416,495 - 89,419,068 (-)NCBI
CeleraX66,751,239 - 66,754,899 (-)NCBICelera
Cytogenetic MapXq22NCBI
IL2RG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X71,107,404 - 71,111,577 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX71,107,404 - 71,112,108 (-)EnsemblGRCh38hg38GRCh38
GRCh37X70,327,254 - 70,331,427 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X70,243,984 - 70,248,128 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X70,110,279 - 70,114,424NCBI
CeleraX70,681,159 - 70,685,386 (-)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX64,146,973 - 64,150,762 (-)NCBIHuRef
CHM1_1X70,219,589 - 70,223,820 (-)NCBICHM1_1
T2T-CHM13v2.0X69,541,496 - 69,545,673 (-)NCBIT2T-CHM13v2.0
Il2rg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X100,307,991 - 100,311,861 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX100,307,984 - 100,311,861 (-)EnsemblGRCm39 Ensembl
GRCm38X101,264,385 - 101,268,255 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX101,264,378 - 101,268,255 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X98,459,726 - 98,463,545 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X97,467,106 - 97,470,925 (-)NCBIMGSCv36mm8
CeleraX88,180,558 - 88,184,377 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX43.9NCBI
Il2rg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547510,676,870 - 10,680,517 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547510,676,592 - 10,680,565 (-)NCBIChiLan1.0ChiLan1.0
IL2RG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X70,785,171 - 70,789,380 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X70,788,781 - 70,792,982 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X60,375,815 - 60,386,936 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X70,433,355 - 70,437,590 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX70,433,360 - 70,437,590 (-)Ensemblpanpan1.1panPan2
IL2RG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X55,480,846 - 55,488,485 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX55,481,092 - 55,484,751 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX46,308,162 - 46,311,760 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X56,449,759 - 56,453,658 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX56,450,007 - 56,453,637 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X54,418,234 - 54,421,830 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X55,749,655 - 55,753,253 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X55,676,806 - 55,680,404 (-)NCBIUU_Cfam_GSD_1.0
Dog CytomapXqNCBI
Il2rg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X46,725,215 - 46,728,870 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936762487,380 - 491,044 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936762487,414 - 491,028 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL2RG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX57,143,570 - 57,147,256 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X57,143,568 - 57,151,242 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X64,674,048 - 64,677,372 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig CytomapXq13NCBI
IL2RG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X60,905,011 - 60,915,723 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX60,905,343 - 60,909,149 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660652,765,485 - 2,776,292 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il2rg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249031,402,481 - 1,406,600 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249031,402,586 - 1,406,554 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Il2rg
3 total Variants

Predicted Target Of
Summary Value
Count of predictions:288
Count of miRNA genes:177
Interacting mature miRNAs:199
Transcripts:ENSRNOT00000005343, ENSRNOT00000050415
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat

U21795  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X66,395,261 - 66,395,407 (+)MAPPERmRatBN7.2
Rnor_6.0X71,165,305 - 71,165,450NCBIRnor6.0
Rnor_5.0X72,017,783 - 72,017,928UniSTSRnor5.0
RGSC_v3.4X89,341,982 - 89,342,127UniSTSRGSC3.4
CeleraX66,751,166 - 66,751,311UniSTS
Cytogenetic MapXq31UniSTS
PMC155645P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X66,397,266 - 66,397,791 (+)MAPPERmRatBN7.2
Rnor_6.0X71,167,310 - 71,167,834NCBIRnor6.0
Rnor_5.0X72,019,788 - 72,020,312UniSTSRnor5.0
RGSC_v3.4X89,343,987 - 89,344,511UniSTSRGSC3.4
CeleraX66,753,171 - 66,753,695UniSTS
Cytogenetic MapXq31UniSTS
Il2rg  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X70,435,939 - 70,436,385 (+)Marker Load Pipeline
mRatBN7.2X66,395,934 - 66,396,380 (+)MAPPERmRatBN7.2
Rnor_6.0X71,165,978 - 71,166,423NCBIRnor6.0
Rnor_5.0X72,018,456 - 72,018,901UniSTSRnor5.0
RGSC_v3.4X89,342,655 - 89,343,100UniSTSRGSC3.4
CeleraX66,751,839 - 66,752,284UniSTS
Cytogenetic MapXq31UniSTS


The following Strains have been annotated to Il2rg





alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 30 of 32 rows
RefSeq Transcripts NM_080889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF410926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU294924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 32 rows

Ensembl Acc Id: ENSRNOT00000005343   ⟹   ENSRNOP00000005343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX66,395,336 - 66,399,017 (-)Ensembl
Rnor_6.0 EnsemblX71,165,366 - 71,169,038 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000050415   ⟹   ENSRNOP00000050241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX66,392,542 - 66,399,823 (-)Ensembl
Rnor_6.0 EnsemblX71,162,585 - 71,169,865 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX71,165,785 - 71,167,054 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075934   ⟹   ENSRNOP00000068438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX66,392,542 - 66,399,044 (-)Ensembl
Rnor_6.0 EnsemblX71,165,366 - 71,168,612 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX71,165,912 - 71,166,988 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX71,167,829 - 71,169,032 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102285   ⟹   ENSRNOP00000088633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX66,392,542 - 66,398,386 (-)Ensembl
RefSeq Acc Id: NM_080889   ⟹   NP_543165
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X70,435,340 - 70,439,000 (-)NCBI
mRatBN7.2X66,395,335 - 66,398,996 (-)NCBI
Rnor_6.0X71,165,378 - 71,169,038 (-)NCBI
Rnor_5.0X72,017,856 - 72,021,516 (-)NCBI
RGSC_v3.4X89,342,055 - 89,345,715 (-)RGD
CeleraX66,751,239 - 66,754,899 (-)RGD
Sequence:
RefSeq Acc Id: XM_017601899   ⟹   XP_017457388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X70,436,347 - 70,439,052 (-)NCBI
mRatBN7.2X66,396,342 - 66,399,026 (-)NCBI
Rnor_6.0X71,166,385 - 71,169,078 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063279764   ⟹   XP_063135834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X70,436,326 - 70,439,052 (-)NCBI
RefSeq Acc Id: NP_543165   ⟸   NM_080889
- Peptide Label: precursor
- UniProtKB: Q68FU6 (UniProtKB/TrEMBL),   A6IQA7 (UniProtKB/TrEMBL),   F7ER36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457388   ⟸   XM_017601899
- Peptide Label: isoform X2
- UniProtKB: D3JTH6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068438   ⟸   ENSRNOT00000075934
Ensembl Acc Id: ENSRNOP00000005343   ⟸   ENSRNOT00000005343
Ensembl Acc Id: ENSRNOP00000050241   ⟸   ENSRNOT00000050415
Fibronectin type-III

Name Modeler Protein Id AA Range Protein Structure
AF-Q7TP53-F1-model_v2 AlphaFold Q7TP53 1-448 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13701872
Promoter ID:EPDNEW_R12396
Type:multiple initiation site
Name:Il2rg_1
Description:interleukin 2 receptor subunit gamma
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X71,169,045 - 71,169,105EPDNEW


1 to 40 of 43 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-2104 BioCyc
Ensembl Genes ENSRNOG00000003954 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005343 ENTREZGENE
  ENSRNOT00000005343.8 UniProtKB/TrEMBL
  ENSRNOT00000050415.7 UniProtKB/TrEMBL
  ENSRNOT00000102285.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7106866 IMAGE-MGC_LOAD
InterPro CRLF2-like_D2 UniProtKB/TrEMBL
  CXorf65-like UniProtKB/TrEMBL
  Fibronectin_type3 UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Hempt_rcpt_S_F1_CS UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  TSLPR_D1 UniProtKB/TrEMBL
KEGG Report rno:140924 UniProtKB/TrEMBL
MGC_CLONE MGC:94791 IMAGE-MGC_LOAD
NCBI Gene 140924 ENTREZGENE
PANTHER AB2-183 UniProtKB/TrEMBL
  CYTOKINE RECEPTOR UniProtKB/TrEMBL
  INTERLEUKIN 2 RECEPTOR SUBUNIT GAMMA UniProtKB/TrEMBL
  PTHR33887 UniProtKB/TrEMBL
Pfam CRLF2-like_D2 UniProtKB/TrEMBL
  Il2rg UniProtKB/TrEMBL
  TSLPR_D1 UniProtKB/TrEMBL
PhenoGen Il2rg PhenoGen
PROSITE FN3 UniProtKB/TrEMBL
  HEMATOPO_REC_S_F1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003954 RatGTEx
SMART FN3 UniProtKB/TrEMBL
Superfamily-SCOP FN_III-like UniProtKB/TrEMBL
UniProt A0A8I6A886_RAT UniProtKB/TrEMBL
  A6IQA7 ENTREZGENE, UniProtKB/TrEMBL
  A6IQA8 ENTREZGENE, UniProtKB/TrEMBL
  D3JTH6 ENTREZGENE, UniProtKB/TrEMBL
  D3JTH7_RAT UniProtKB/TrEMBL
  D3JTH8_RAT UniProtKB/TrEMBL
  D3JTI0_RAT UniProtKB/TrEMBL
  F7ER36 ENTREZGENE, UniProtKB/TrEMBL
  Q68FU6 ENTREZGENE
1 to 40 of 43 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-11-06 Il2rg  interleukin 2 receptor, gamma  Il2rg  interleukin 2 receptor, gamma chain  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-22 Il2rg  interleukin 2 receptor, gamma chain  Il2rg  interleukin 2 receptor, gamma (severe combined immunodeficiency)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Il2rg  interleukin 2 receptor, gamma (severe combined immunodeficiency)    interleukin 2 receptor, gamma chain  Name updated 1299863 APPROVED
2002-08-07 Il2rg  interleukin 2 receptor, gamma chain      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_disease mutation causes X-linked severe combined immunodeficiency disease (X-SCID) 633044