Nup107 (nucleoporin 107) - Rat Genome Database

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Gene: Nup107 (nucleoporin 107) Rattus norvegicus
Analyze
Symbol: Nup107
Name: nucleoporin 107
RGD ID: 621160
Description: Predicted to be a structural constituent of nuclear pore. Predicted to be involved in several processes, including nuclear pore complex assembly; nucleocytoplasmic transport; and post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery. Located in nuclear membrane. Part of nuclear pore. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome; nephrotic syndrome type 11; and ovarian dysgenesis 6. Orthologous to human NUP107 (nucleoporin 107); PARTICIPATES IN mRNA nuclear export pathway; RNA transport pathway; INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 107 kDa nucleoporin; nuclear pore complex protein Nup107; nucleoporin Nup107; p105
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8755,239,610 - 55,285,050 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl755,239,613 - 55,285,234 (-)EnsemblGRCr8
mRatBN7.2753,353,740 - 53,398,345 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl753,353,743 - 53,398,370 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx755,260,432 - 55,305,040 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0757,463,546 - 57,508,149 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0757,241,421 - 57,286,009 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0760,781,724 - 60,825,225 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl760,781,729 - 60,825,242 (-)Ensemblrn6Rnor6.0
Rnor_5.0760,781,687 - 60,825,188 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4757,059,744 - 57,104,512 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera750,124,939 - 50,169,469 (-)NCBICelera
RGSC_v3.1757,080,475 - 57,125,256 (-)NCBI
Cytogenetic Map7q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
kinetochore  (IEA,ISO,ISS)
nuclear envelope  (IEA,ISO)
nuclear membrane  (IDA,IEA,ISO,ISS)
nuclear periphery  (ISO,ISS)
nuclear pore  (IDA,IEA,ISO,ISS)
nuclear pore outer ring  (IBA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Regulation of mRNA trafficking by nuclear pore complexes. Bonnet A and Palancade B, Genes (Basel). 2014 Sep 2;5(3):767-91. doi: 10.3390/genes5030767.
2. Age-dependent deterioration of nuclear pore complexes causes a loss of nuclear integrity in postmitotic cells. D'Angelo MA, etal., Cell. 2009 Jan 23;136(2):284-95. doi: 10.1016/j.cell.2008.11.037.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Nup107 is a novel nuclear pore complex protein that contains a leucine zipper. Radu A, etal., J Biol Chem 1994 Jul 1;269(26):17600-5.
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. Vasu S, etal., J Cell Biol. 2001 Oct 29;155(3):339-54. Epub 2001 Oct 29.
Additional References at PubMed
PMID:8889548   PMID:11564755   PMID:12802065   PMID:15229283   PMID:17360435   PMID:17363900   PMID:19946888   PMID:26411495   PMID:26485283   PMID:30179222   PMID:30506890  


Genomics

Comparative Map Data
Nup107
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8755,239,610 - 55,285,050 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl755,239,613 - 55,285,234 (-)EnsemblGRCr8
mRatBN7.2753,353,740 - 53,398,345 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl753,353,743 - 53,398,370 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx755,260,432 - 55,305,040 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0757,463,546 - 57,508,149 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0757,241,421 - 57,286,009 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0760,781,724 - 60,825,225 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl760,781,729 - 60,825,242 (-)Ensemblrn6Rnor6.0
Rnor_5.0760,781,687 - 60,825,188 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4757,059,744 - 57,104,512 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera750,124,939 - 50,169,469 (-)NCBICelera
RGSC_v3.1757,080,475 - 57,125,256 (-)NCBI
Cytogenetic Map7q22NCBI
NUP107
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381268,686,978 - 68,745,809 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1268,686,951 - 68,745,809 (+)Ensemblhg38GRCh38
GRCh371269,080,758 - 69,139,589 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361267,366,998 - 67,422,740 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341267,366,997 - 67,422,739NCBI
Celera1268,744,181 - 68,799,945 (+)NCBICelera
Cytogenetic Map12q15NCBI
HuRef1266,131,401 - 66,186,887 (+)NCBIHuRef
CHM1_11269,048,911 - 69,104,658 (+)NCBICHM1_1
T2T-CHM13v2.01268,666,525 - 68,725,366 (+)NCBIT2T-CHM13v2.0
Nup107
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910117,586,526 - 117,628,607 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10117,586,526 - 117,628,610 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3810117,750,621 - 117,792,736 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10117,750,621 - 117,792,705 (-)Ensemblmm10GRCm38
MGSCv3710117,187,699 - 117,229,761 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610117,153,636 - 117,195,698 (-)NCBIMGSCv36mm8
Celera10119,688,469 - 119,730,534 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1066.32NCBI
Nup107
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545815,149,054 - 15,201,635 (+)Ensembl
ChiLan1.0NW_00495545815,148,773 - 15,201,717 (+)NCBIChiLan1.0ChiLan1.0
NUP107
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21076,705,598 - 76,761,221 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11276,701,996 - 76,757,639 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01266,198,838 - 66,254,505 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11268,981,409 - 69,035,637 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1268,981,409 - 69,035,642 (+)EnsemblpanPan2panpan1.1
NUP107
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11010,838,881 - 10,887,347 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1010,838,944 - 10,887,197 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1010,771,659 - 10,820,324 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01010,962,858 - 11,011,548 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1010,962,911 - 11,011,711 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11010,830,697 - 10,879,383 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01011,077,119 - 11,125,774 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01011,199,135 - 11,247,756 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nup107
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494547,467,288 - 47,510,017 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365456,600,088 - 6,642,870 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365456,600,124 - 6,642,839 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP107
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl532,989,794 - 33,042,575 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1532,989,661 - 33,040,565 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2535,773,502 - 35,824,699 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP107
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11164,317,489 - 64,375,609 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1164,317,521 - 64,375,398 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037181,330,280 - 181,387,455 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup107
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624948556,127 - 601,540 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624948556,054 - 604,381 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Nup107
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11195,855,933 - 195,898,198 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nup107
370 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:308
Count of miRNA genes:199
Interacting mature miRNAs:224
Transcripts:ENSRNOT00000009203
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
10059605Kidm47Kidney mass QTL 472.910.05kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)74913799967614020Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)74968283263890004Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2303629Vencon3Ventilatory control QTL 37.25respiration trait (VT:0001943)respiration rate (CMO:0000289)74299622658678836Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72862457565788017Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat

Markers in Region
RH131443  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2753,353,846 - 53,354,047 (+)MAPPERmRatBN7.2
Rnor_6.0760,781,831 - 60,782,031NCBIRnor6.0
Rnor_5.0760,781,794 - 60,781,994UniSTSRnor5.0
RGSC_v3.4757,059,851 - 57,060,051UniSTSRGSC3.4
Celera750,125,046 - 50,125,246UniSTS
RH 3.4 Map7487.7UniSTS
Cytogenetic Map7q22UniSTS
BI288689  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2753,371,959 - 53,372,145 (+)MAPPERmRatBN7.2
Rnor_6.0760,799,979 - 60,800,164NCBIRnor6.0
Rnor_5.0760,799,942 - 60,800,127UniSTSRnor5.0
RGSC_v3.4757,077,964 - 57,078,149UniSTSRGSC3.4
Celera750,143,159 - 50,143,344UniSTS
RH 3.4 Map7487.6UniSTS
Cytogenetic Map7q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000009203   ⟹   ENSRNOP00000009203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl755,239,613 - 55,282,954 (-)Ensembl
mRatBN7.2 Ensembl753,353,743 - 53,397,090 (-)Ensembl
Rnor_6.0 Ensembl760,781,729 - 60,825,242 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106167   ⟹   ENSRNOP00000096708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl755,239,615 - 55,284,226 (-)Ensembl
mRatBN7.2 Ensembl753,353,842 - 53,398,370 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000133072   ⟹   ENSRNOP00000100946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl755,239,613 - 55,285,234 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000140409   ⟹   ENSRNOP00000104751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl755,239,613 - 55,281,959 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000147605   ⟹   ENSRNOP00000104443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl755,239,613 - 55,283,835 (-)Ensembl
RefSeq Acc Id: NM_053830   ⟹   NP_446282
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8755,239,610 - 55,284,209 (-)NCBI
mRatBN7.2753,353,740 - 53,398,345 (-)NCBI
Rnor_6.0760,781,724 - 60,825,225 (-)NCBI
Rnor_5.0760,781,687 - 60,825,188 (-)NCBI
RGSC_v3.4757,059,744 - 57,104,512 (-)RGD
Celera750,124,939 - 50,169,469 (-)RGD
Sequence:
RefSeq Acc Id: XM_063262867   ⟹   XP_063118937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8755,239,612 - 55,285,050 (-)NCBI
RefSeq Acc Id: XM_063262868   ⟹   XP_063118938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8755,239,612 - 55,281,654 (-)NCBI
RefSeq Acc Id: NP_446282   ⟸   NM_053830
- UniProtKB: P52590 (UniProtKB/Swiss-Prot),   A6IGT7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009203   ⟸   ENSRNOT00000009203
Ensembl Acc Id: ENSRNOP00000096708   ⟸   ENSRNOT00000106167
RefSeq Acc Id: XP_063118937   ⟸   XM_063262867
- Peptide Label: isoform X1
- UniProtKB: P52590 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063118938   ⟸   XM_063262868
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AQT4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104443   ⟸   ENSRNOT00000147605
Ensembl Acc Id: ENSRNOP00000104751   ⟸   ENSRNOT00000140409
Ensembl Acc Id: ENSRNOP00000100946   ⟸   ENSRNOT00000133072

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P52590-F1-model_v2 AlphaFold P52590 1-926 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695218
Promoter ID:EPDNEW_R5743
Type:initiation region
Name:Nup107_1
Description:nucleoporin 107
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0760,825,250 - 60,825,310EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621160 AgrOrtholog
BioCyc Gene G2FUF-33977 BioCyc
Ensembl Genes ENSRNOG00000006541 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000106167 ENTREZGENE
  ENSRNOT00000133072 ENTREZGENE
  ENSRNOT00000140409 ENTREZGENE
Gene3D-CATH 1.10.3450.20 UniProtKB/Swiss-Prot
  1.20.190.50 UniProtKB/Swiss-Prot
InterPro Nup84/Nup107 UniProtKB/Swiss-Prot
NCBI Gene 116555 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP107 UniProtKB/Swiss-Prot
  PTHR13003 UniProtKB/Swiss-Prot
Pfam Nup84_Nup100 UniProtKB/Swiss-Prot
PhenoGen Nup107 PhenoGen
RatGTEx ENSRNOG00000006541 RatGTEx
UniProt A0A8I6AQT4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0KZR7_RAT UniProtKB/TrEMBL
  A0ABK0LLU3_RAT UniProtKB/TrEMBL
  A0ABK0LS07_RAT UniProtKB/TrEMBL
  A6IGT6_RAT UniProtKB/TrEMBL
  A6IGT7 ENTREZGENE, UniProtKB/TrEMBL
  A6IGT8_RAT UniProtKB/TrEMBL
  A6IGU0_RAT UniProtKB/TrEMBL
  A6IGU2_RAT UniProtKB/TrEMBL
  F1LSL2_RAT UniProtKB/TrEMBL
  NU107_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Nup107  nucleoporin 107    nuclear pore complex protein  Name updated 1299863 APPROVED
2002-08-07 Nup107  nuclear pore complex protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains a leucine zipper and kinase consensus sites 729023