Hyou1 (hypoxia up-regulated 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Hyou1 (hypoxia up-regulated 1) Rattus norvegicus
Analyze
Symbol: Hyou1
Name: hypoxia up-regulated 1
RGD ID: 621146
Description: Predicted to enable adenyl-nucleotide exchange factor activity. Involved in negative regulation of hypoxia-induced intrinsic apoptotic signaling pathway and response to hypoxia. Located in smooth endoplasmic reticulum. Human ortholog(s) of this gene implicated in immunodeficiency 59. Orthologous to human HYOU1 (hypoxia up-regulated 1); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; INTERACTS WITH (+)-schisandrin B; 1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 150 kDa oxygen-regulated protein; Cab140; hypoxia up-regulated protein 1; ORP-150; Orp150; oxygen regulated protein (150kD)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,602,882 - 53,614,998 (+)NCBIGRCr8
mRatBN7.2844,706,073 - 44,718,189 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,706,263 - 44,718,186 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,202,146 - 50,214,290 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,480,862 - 48,493,006 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,351,091 - 46,363,246 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,699,796 - 48,711,912 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,699,769 - 48,711,910 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,318,767 - 47,330,883 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,346,753 - 47,358,869 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,355,708 - 47,366,413 (+)NCBI
Celera844,292,303 - 44,304,419 (+)NCBICelera
Cytogenetic Map8q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 14 of 14 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hyou1RatCD3epsilon deficiency  ISOHYOU1 (Homo sapiens)8554872ClinVar Annotator: match by term: CD3epsilon deficiencyClinVarPMID:14602880 more ...
Hyou1Ratchromosome 11 partial duplication syndrome  ISOHYOU1 (Homo sapiens)8554872ClinVar Annotator: match by term: Distal trisomy 11qClinVarPMID:25741868
Hyou1RatDwarfism  ISOHYOU1 (Homo sapiens)8554872ClinVar Annotator: match by term: Short statureClinVarPMID:32581362
Hyou1RatFamilial Atrial Fibrillation 14  ISOHYOU1 (Homo sapiens)8554872ClinVar Annotator: match by term: Atrial fibrillation more ...ClinVarPMID:28492532
Hyou1Ratglycogen storage disease Ib  ISOHYOU1 (Homo sapiens)8554872ClinVar Annotator: match by term: Glucose-6-phosphate transport defectClinVarPMID:28492532
Hyou1Ratimmunodeficiency 17  ISOHYOU1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:14602880 more ...
Hyou1Ratimmunodeficiency 18  ISOHYOU1 (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency 18ClinVarPMID:14602880 more ...
Hyou1Ratimmunodeficiency 19  ISOHYOU1 (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency 19ClinVarPMID:14602880 more ...
Hyou1Ratimmunodeficiency 59  ISOHYOU1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:17576681 more ...
Hyou1Ratinflammatory bowel disease 28  ISOHYOU1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inflammatory bowel disease 28ClinVarPMID:14602880 more ...
Hyou1Ratisolated microphthalmia 5  ISOHYOU1 (Homo sapiens)8554872ClinVar Annotator: match by term: Isolated microphthalmia 5ClinVarPMID:28492532
Hyou1Ratlong QT syndrome 10  ISOHYOU1 (Homo sapiens)8554872ClinVar Annotator: match by term: Long QT syndrome 10ClinVarPMID:28492532
Hyou1RatRASopathy  ISOHYOU1 (Homo sapiens)8554872ClinVar Annotator: match by term: RASopathyClinVarPMID:28492532
Hyou1Ratschizophrenia  ISOHYOU1 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
1 to 14 of 14 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hyou1Ratspinocerebellar ataxia type 17  ISOHYOU1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:24413982
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hyou1Ratimmunodeficiency 59  ISOHYOU1 (Homo sapiens)7240710 OMIM 

1 to 20 of 159 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hyou1Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of HYOU1 mRNA]CTDPMID:31150632
Hyou1Rat(1->4)-beta-D-glucan multiple interactionsISOHyou1 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of HYOU1 mRNACTDPMID:36331819
Hyou1Rat1,2-dichloroethane increases expressionISOHyou1 (Mus musculus)6480464ethylene dichloride results in increased expression of HYOU1 mRNACTDPMID:28189721 and PMID:28960355
Hyou1Rat1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine increases expressionEXP 6480464chlorcyclizine results in increased expression of HYOU1 mRNACTDPMID:21058326
Hyou1Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of HYOU1 mRNACTDPMID:17351261
Hyou1Rat17alpha-ethynylestradiol affects expressionEXP 6480464Ethinyl Estradiol affects the expression of HYOU1 mRNACTDPMID:20170705 and PMID:26865667
Hyou1Rat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in decreased expression of HYOU1 mRNACTDPMID:26496021
Hyou1Rat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of HYOU1 mRNACTDPMID:32145629
Hyou1Rat17beta-estradiol increases expressionISOHyou1 (Mus musculus)6480464Estradiol results in increased expression of HYOU1 mRNACTDPMID:30077407 and PMID:39298647
Hyou1Rat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one increases expressionISOHYOU1 (Homo sapiens)6480464Metribolone results in increased expression of HYOU1 proteinCTDPMID:17152098
Hyou1Rat17beta-hydroxy-5alpha-androstan-3-one increases expressionISOHYOU1 (Homo sapiens)6480464Dihydrotestosterone results in increased expression of HYOU1 mRNACTDPMID:29581250
Hyou1Rat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOHyou1 (Mus musculus)64804642 more ...CTDPMID:30294300
Hyou1Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOHyou1 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of HYOU1 mRNACTDPMID:21570461
Hyou1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOHyou1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of HYOU1 mRNACTDPMID:26290441
Hyou1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of HYOU1 mRNACTDPMID:20959002
Hyou1Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionEXP 64804642 more ...CTDPMID:19954255
Hyou1Rat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of HYOU1 mRNACTDPMID:21346803
Hyou1Rat2-amino-2-deoxy-D-glucopyranose decreases expressionISOHyou1 (Mus musculus)6480464Glucosamine results in decreased expression of HYOU1 mRNACTDPMID:17178593
Hyou1Rat2-palmitoylglycerol increases expressionISOHYOU1 (Homo sapiens)64804642-palmitoylglycerol results in increased expression of HYOU1 mRNACTDPMID:37199045
Hyou1Rat3,4-methylenedioxymethamphetamine decreases expressionISOHyou1 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of HYOU1 mRNACTDPMID:26251327

1 to 20 of 159 rows

Biological Process
1 to 19 of 19 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hyou1Ratcellular response to hypoxia involved_inIEAUniProtKB:Q9Y4L1 and ensembl:ENSP000004801501600115GO_REF:0000107EnsemblGO_REF:0000107
Hyou1Ratcellular response to hypoxia involved_inISOHYOU1 (Homo sapiens)1624291 PMID:10837345 and PMID:9020069RGDPMID:10837345 and PMID:9020069
Hyou1Ratendoplasmic reticulum to Golgi vesicle-mediated transport involved_inIEAUniProtKB:Q9Y4L1 and ensembl:ENSP000004801501600115GO_REF:0000107EnsemblGO_REF:0000107
Hyou1Ratendoplasmic reticulum to Golgi vesicle-mediated transport involved_inISOHYOU1 (Homo sapiens)1624291 PMID:10837345RGDPMID:10837345
Hyou1Ratnegative regulation of apoptotic process involved_inISOHyou1 (Mus musculus)1624291 PMID:14960622RGDPMID:14960622
Hyou1Ratnegative regulation of apoptotic process involved_inIEAUniProtKB:Q9JKR6 and ensembl:ENSMUSP000001237001600115GO_REF:0000107EnsemblGO_REF:0000107
Hyou1Ratnegative regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway involved_inISOHyou1 (Mus musculus)1624291 PMID:17116640RGDPMID:17116640
Hyou1Ratnegative regulation of endoplasmic reticulum stress-induced neuron intrinsic apoptotic signaling pathway involved_inIEAUniProtKB:Q9JKR6 and ensembl:ENSMUSP000001237001600115GO_REF:0000107EnsemblGO_REF:0000107
Hyou1Ratnegative regulation of hypoxia-induced intrinsic apoptotic signaling pathway involved_inIDA 10047348PMID:11231630ParkinsonsUK-UCL 
Hyou1Ratnegative regulation of hypoxia-induced intrinsic apoptotic signaling pathway involved_inIBAPANTHER:PTN002321639 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Hyou1Ratnegative regulation of hypoxia-induced intrinsic apoptotic signaling pathway involved_inISOHYOU1 (Homo sapiens)1624291 PMID:10037731RGDPMID:10037731
Hyou1Ratnegative regulation of hypoxia-induced intrinsic apoptotic signaling pathway involved_inIEAUniProtKB:Q9Y4L1 and ensembl:ENSP000004801501600115GO_REF:0000107EnsemblGO_REF:0000107
Hyou1Ratprotein folding involved_inIEAGO:01406621600115GO_REF:0000108GOCGO_REF:0000108
Hyou1Ratresponse to endoplasmic reticulum stress involved_inIEAUniProtKB:Q9Y4L1 and ensembl:ENSP000004801501600115GO_REF:0000107EnsemblGO_REF:0000107
Hyou1Ratresponse to endoplasmic reticulum stress involved_inISOHYOU1 (Homo sapiens)1624291 PMID:9020069RGDPMID:9020069
Hyou1Ratresponse to hypoxia  IDA 633350 RGD 
Hyou1Ratresponse to ischemia acts_upstream_of_or_withinISOHyou1 (Mus musculus)1624291 PMID:9748521RGDPMID:9748521
Hyou1Ratresponse to ischemia involved_inISOHyou1 (Mus musculus)1624291 PMID:11231630RGDPMID:11231630
Hyou1Ratresponse to ischemia acts_upstream_of_or_withinIEAUniProtKB:Q9JKR6 and ensembl:ENSMUSP000001237001600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 19 of 19 rows

Cellular Component
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hyou1Ratendoplasmic reticulum located_inISOHYOU1 (Homo sapiens)1624291 PMID:18094145RGDPMID:18094145
Hyou1Ratendoplasmic reticulum located_inIEAUniProtKB:Q9Y4L1 and ensembl:ENSP000004801501600115GO_REF:0000107EnsemblGO_REF:0000107
Hyou1Ratendoplasmic reticulum located_inIEAUniProtKB-KW:KW-02561600115GO_REF:0000043UniProtGO_REF:0000043
Hyou1Ratendoplasmic reticulum chaperone complex part_ofISOHyou1 (Mus musculus)1624291 PMID:12475965RGDPMID:12475965
Hyou1Ratendoplasmic reticulum chaperone complex part_ofIBAMGI:108030 and PANTHER:PTN0004526511600115GO_REF:0000033GO_CentralGO_REF:0000033
Hyou1Ratendoplasmic reticulum chaperone complex part_ofIEAUniProtKB:Q9JKR6 and ensembl:ENSMUSP000001237001600115GO_REF:0000107EnsemblGO_REF:0000107
Hyou1Ratendoplasmic reticulum lumen located_inIEAUniProtKB-SubCell:SL-00961600115GO_REF:0000044UniProtGO_REF:0000044
Hyou1Ratmitochondrion located_inISOHYOU1 (Homo sapiens)1624291 PMID:18094145RGDPMID:18094145
Hyou1Ratmitochondrion located_inIEAUniProtKB:Q9Y4L1 and ensembl:ENSP000004801501600115GO_REF:0000107EnsemblGO_REF:0000107
Hyou1Ratsmooth endoplasmic reticulum located_inIDA 8553430PMID:22665516UniProt 
1 to 10 of 10 rows

Molecular Function

  

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hyou1RatEndoplasmic Reticulum-associated degradation pathway  IEA 6907045 KEGGrno:04141

1 to 11 of 11 rows
#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. An interaction map of endoplasmic reticulum chaperones and foldases. Jansen G, etal., Mol Cell Proteomics. 2012 Sep;11(9):710-23. doi: 10.1074/mcp.M111.016550. Epub 2012 Jun 4.
3. Purification and characterization of a novel stress protein, the 150-kDa oxygen-regulated protein (ORP150), from cultured rat astrocytes and its expression in ischemic mouse brain. Kuwabara K, etal., J Biol Chem 1996 Mar 1;271(9):5025-32.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
11. ORP150 protects against hypoxia/ischemia-induced neuronal death. Tamatani M, etal., Nat Med. 2001 Mar;7(3):317-23.
1 to 11 of 11 rows
PMID:9006956   PMID:9020069   PMID:9748521   PMID:10037731   PMID:10837345   PMID:12475965   PMID:14960622   PMID:15733911   PMID:16955111   PMID:17116640   PMID:18094145   PMID:19199708  
PMID:19946888   PMID:21423176   PMID:21536389   PMID:23707263   PMID:24625528   PMID:28028074   PMID:29098793   PMID:29476059   PMID:30053369   PMID:30361391   PMID:31505169  



Hyou1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,602,882 - 53,614,998 (+)NCBIGRCr8
mRatBN7.2844,706,073 - 44,718,189 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,706,263 - 44,718,186 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,202,146 - 50,214,290 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,480,862 - 48,493,006 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,351,091 - 46,363,246 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0848,699,796 - 48,711,912 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,699,769 - 48,711,910 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,318,767 - 47,330,883 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,346,753 - 47,358,869 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,355,708 - 47,366,413 (+)NCBI
Celera844,292,303 - 44,304,419 (+)NCBICelera
Cytogenetic Map8q22NCBI
HYOU1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811119,044,188 - 119,057,205 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11119,044,188 - 119,057,227 (-)EnsemblGRCh38hg38GRCh38
GRCh3711118,914,899 - 118,927,916 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,420,110 - 118,433,122 (-)NCBINCBI36Build 36hg18NCBI36
Celera11116,072,540 - 116,085,596 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,854,557 - 114,867,575 (-)NCBIHuRef
CHM1_111118,801,167 - 118,814,197 (-)NCBICHM1_1
T2T-CHM13v2.011119,064,550 - 119,077,556 (-)NCBIT2T-CHM13v2.0
Hyou1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,290,840 - 44,303,662 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,290,787 - 44,303,666 (+)EnsemblGRCm39 Ensembl
GRCm38944,379,490 - 44,392,369 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,379,490 - 44,392,369 (+)EnsemblGRCm38mm10GRCm38
MGSCv37944,187,573 - 44,200,452 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,130,580 - 44,143,364 (+)NCBIMGSCv36mm8
Celera941,627,066 - 41,639,919 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Hyou1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,148,953 - 20,161,172 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,149,104 - 20,161,378 (-)NCBIChiLan1.0ChiLan1.0
HYOU1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,749,015 - 119,762,064 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,852,712 - 120,865,769 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,882,418 - 113,895,438 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,812,050 - 117,825,091 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,812,975 - 117,824,005 (-)Ensemblpanpan1.1panPan2
HYOU1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,795,750 - 14,808,203 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl514,795,750 - 14,807,262 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,848,571 - 14,860,968 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0514,738,891 - 14,751,288 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl514,738,464 - 14,751,437 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1514,876,904 - 14,889,447 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0514,780,910 - 14,793,451 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0514,821,311 - 14,832,539 (+)NCBIUU_Cfam_GSD_1.0
Hyou1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,084,483 - 101,101,869 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365424,005,610 - 4,018,135 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365424,005,616 - 4,018,135 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HYOU1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,264,933 - 46,276,995 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,264,929 - 46,277,056 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,300,063 - 51,312,075 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HYOU1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,418,497 - 110,431,636 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,417,942 - 110,431,590 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,603,358 - 15,616,849 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hyou1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478414,427,130 - 14,439,038 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478414,427,297 - 14,439,027 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Hyou1
40 total Variants

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir27arno-miR-27a-3pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)18258830

Predicted Target Of
Summary Value
Count of predictions:231
Count of miRNA genes:142
Interacting mature miRNAs:180
Transcripts:ENSRNOT00000044613
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 64 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83084815461290444Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat

1 to 10 of 64 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000044613   ⟹   ENSRNOP00000039172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl844,706,263 - 44,718,186 (+)Ensembl
Rnor_6.0 Ensembl848,699,769 - 48,711,910 (+)Ensembl
RefSeq Acc Id: NM_001034028   ⟹   NP_001029200
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,602,882 - 53,614,998 (+)NCBI
mRatBN7.2844,706,073 - 44,718,189 (+)NCBI
Rnor_6.0848,699,796 - 48,711,912 (+)NCBI
Rnor_5.0847,318,767 - 47,330,883 (+)NCBI
RGSC_v3.4847,346,753 - 47,358,869 (+)RGD
Celera844,292,303 - 44,304,419 (+)RGD
Sequence:
RefSeq Acc Id: NM_138867   ⟹   NP_620222
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,603,072 - 53,614,998 (+)NCBI
mRatBN7.2844,706,263 - 44,718,189 (+)NCBI
Rnor_6.0848,699,986 - 48,711,912 (+)NCBI
Rnor_5.0847,318,767 - 47,330,883 (+)NCBI
RGSC_v3.4847,346,753 - 47,358,869 (+)RGD
Celera844,292,493 - 44,304,419 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242884   ⟹   XP_006242946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,602,923 - 53,614,996 (+)NCBI
mRatBN7.2844,706,122 - 44,718,189 (+)NCBI
Rnor_6.0848,699,845 - 48,711,910 (+)NCBI
Rnor_5.0847,318,767 - 47,330,883 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242885   ⟹   XP_006242947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8853,602,922 - 53,614,996 (+)NCBI
mRatBN7.2844,706,127 - 44,718,187 (+)NCBI
Rnor_6.0848,699,844 - 48,711,910 (+)NCBI
Rnor_5.0847,318,767 - 47,330,883 (+)NCBI
Sequence:
1 to 10 of 10 rows
Protein RefSeqs NP_001029200 (Get FASTA)   NCBI Sequence Viewer  
  NP_620222 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242946 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242947 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB05672 (Get FASTA)   NCBI Sequence Viewer  
  AAH65310 (Get FASTA)   NCBI Sequence Viewer  
  EDL95301 (Get FASTA)   NCBI Sequence Viewer  
  EDL95302 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000039172
GenBank Protein Q63617 (Get FASTA)   NCBI Sequence Viewer  
1 to 10 of 10 rows
RefSeq Acc Id: NP_001029200   ⟸   NM_001034028
- Peptide Label: precursor
- UniProtKB: Q6P136 (UniProtKB/TrEMBL),   F1LN18 (UniProtKB/TrEMBL),   A0A8J8XLC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_620222   ⟸   NM_138867
- Peptide Label: precursor
- UniProtKB: Q6P136 (UniProtKB/TrEMBL),   F1LN18 (UniProtKB/TrEMBL),   A0A8J8XLC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242946   ⟸   XM_006242884
- Peptide Label: isoform X1
- UniProtKB: Q6P136 (UniProtKB/TrEMBL),   F1LN18 (UniProtKB/TrEMBL),   A0A8J8XLC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242947   ⟸   XM_006242885
- Peptide Label: isoform X1
- UniProtKB: Q6P136 (UniProtKB/TrEMBL),   F1LN18 (UniProtKB/TrEMBL),   A0A8J8XLC6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039172   ⟸   ENSRNOT00000044613

Name Modeler Protein Id AA Range Protein Structure
AF-Q63617-F1-model_v2 AlphaFold Q63617 1-999 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13695893
Promoter ID:EPDNEW_R6417
Type:initiation region
Name:Hyou1_1
Description:hypoxia up-regulated 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0848,699,786 - 48,699,846EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-30722 BioCyc
Ensembl Genes ENSRNOG00000010944 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000044613 ENTREZGENE
Gene3D-CATH 1.20.1270.10 UniProtKB/Swiss-Prot
  3.30.30.30 UniProtKB/Swiss-Prot
  3.30.420.40 UniProtKB/Swiss-Prot
  Actin, Chain A, domain 4 UniProtKB/Swiss-Prot
  Substrate Binding Domain Of DNAk, Chain A, domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5621638 IMAGE-MGC_LOAD
InterPro ATPase_NBD UniProtKB/Swiss-Prot
  Heat_shock_70_CS UniProtKB/Swiss-Prot
  HSP70_C_sf UniProtKB/Swiss-Prot
  HSP70_peptide-bd_sf UniProtKB/Swiss-Prot
  Hsp_70_fam UniProtKB/Swiss-Prot
KEGG Report rno:192235 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72301 IMAGE-MGC_LOAD
NCBI Gene 192235 ENTREZGENE
PANTHER HSC70CB, ISOFORM G-RELATED UniProtKB/Swiss-Prot
  HYPOXIA UP-REGULATED PROTEIN 1 UniProtKB/Swiss-Prot
Pfam HSP70 UniProtKB/Swiss-Prot
PhenoGen Hyou1 PhenoGen
PRINTS HEATSHOCK70 UniProtKB/Swiss-Prot
PROSITE HSP70_2 UniProtKB/Swiss-Prot
  HSP70_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000010944 RatGTEx
Superfamily-SCOP SSF100934 UniProtKB/Swiss-Prot
  SSF53067 UniProtKB/Swiss-Prot
UniProt A0A8J8XLC6 ENTREZGENE, UniProtKB/TrEMBL
  F1LN18 ENTREZGENE
  HYOU1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6P136 ENTREZGENE, UniProtKB/TrEMBL
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Hyou1  hypoxia up-regulated 1  Orp150  oxygen regulated protein (150kD)  Symbol and Name updated 1299863 APPROVED
2002-08-07 Orp150  oxygen regulated protein (150kD)      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_cellular_localization localized to the endoplasmic reticulum 633350
gene_expression expressed only in hypoxic astrocytes 633350