Tgm2 (transglutaminase 2) - Rat Genome Database

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Gene: Tgm2 (transglutaminase 2) Rattus norvegicus
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Symbol: Tgm2
Name: transglutaminase 2
RGD ID: 621081
Description: Enables several functions, including GTP binding activity; identical protein binding activity; and phospholipase binding activity. Involved in several processes, including isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine; positive regulation of canonical NF-kappaB signal transduction; and positive regulation of smooth muscle cell proliferation. Acts upstream of or within phospholipase C-activating G protein-coupled receptor signaling pathway. Located in cytosol and nucleus. Orthologous to human TGM2 (transglutaminase 2); PARTICIPATES IN eicosanoid signaling pathway; Huntington's disease pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: glutamine gamma-glutamyltransferase 2; isopeptidase TGM2; protein-glutamine deamidase TGM2; protein-glutamine dopaminyltransferase TGM2; protein-glutamine gamma-glutamyltransferase 2; protein-glutamine histaminyltransferase TGM2; protein-glutamine noradrenalinyltransferase TGM2; protein-glutamine serotonyltransferase TGM2; TGase 2; TGase II; TgaseII; TGII; tissue transglutaminase; tissue-type transglutaminase; transglutaminase 2, C polypeptide; transglutaminase II; tTG; tTgase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83167,192,612 - 167,221,845 (-)NCBIGRCr8
mRatBN7.23146,772,684 - 146,801,924 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3146,772,687 - 146,801,981 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3150,598,013 - 150,627,250 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03159,097,613 - 159,126,553 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03156,839,077 - 156,868,039 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03154,597,165 - 154,627,257 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3154,597,168 - 154,627,257 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03160,977,905 - 161,007,261 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43148,832,866 - 148,862,385 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13148,738,777 - 148,768,294 (-)NCBI
Celera3145,473,663 - 145,503,117 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Tgm2RatLeft Ventricular Hypertrophy  IMP 1302539 RGD 
Tgm2Ratliver cirrhosis treatmentISOTgm2 (Mus musculus)39938956associated with Schistosomiasis JaponicaRGD 
Tgm2Ratliver cirrhosis severityISOTgm2 (Mus musculus)39938956associated with Schistosomiasis JaponicaRGD 
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Tgm2Ratfocal epilepsy  ISOTGM2 (Homo sapiens)8554872ClinVar Annotator: match by term: Focal-onset seizureClinVarPMID:32581362
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Tgm2RatBrain Neoplasms  ISOTGM2 (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:16170020
Tgm2RatBreast Neoplasms  ISOTGM2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19579870
Tgm2Ratceliac disease  ISOTGM2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17190764
Tgm2RatEsophageal Neoplasms  ISOTGM2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17068819
Tgm2Ratglioblastoma  ISOTGM2 (Homo sapiens)11554173CTD more ...CTDPMID:16170020 and PMID:17099729
Tgm2Rathypertension  ISOTGM2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17898543
Tgm2Ratosteoarthritis  ISOTGM2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18784066
Tgm2Ratpancreatic cancer  ISOTGM2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30108682
Tgm2Ratrenal cell carcinoma  ISOTGM2 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15108329
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Tgm2Ratmaturity-onset diabetes of the young  ISSTgm2 (Mus musculus)13592920OMIM:606391MouseDO 

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Tgm2Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of TGM2 mRNA]CTDPMID:31150632
Tgm2Rat(1->4)-beta-D-glucan multiple interactionsISOTgm2 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of TGM2 mRNACTDPMID:36331819
Tgm2Rat1,1-dichloroethene increases expressionISOTgm2 (Mus musculus)6480464vinylidene chloride results in increased expression of TGM2 mRNACTDPMID:26682919
Tgm2Rat1,2-dimethylhydrazine increases expressionISOTgm2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of TGM2 mRNACTDPMID:22206623
Tgm2Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine multiple interactionsISOTgm2 (Mus musculus)6480464TGM2 protein affects the reaction [1-Methyl-4-phenyl-1 more ...CTDPMID:30195017
Tgm2Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine increases activityISOTgm2 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:30195017
Tgm2Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine increases expressionISOTgm2 (Mus musculus)64804641-Methyl-4-phenyl-1 more ...CTDPMID:30195017
Tgm2Rat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of TGM2 mRNACTDPMID:15834898 and PMID:17557909
Tgm2Rat17alpha-ethynylestradiol affects expressionISOTgm2 (Mus musculus)6480464Ethinyl Estradiol affects the expression of TGM2 mRNACTDPMID:14976129 and PMID:17555576
Tgm2Rat17alpha-ethynylestradiol increases expressionISOTgm2 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of TGM2 mRNACTDPMID:17942748
Tgm2Rat17alpha-ethynylestradiol multiple interactionsISOTgm2 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of TGM2 mRNACTDPMID:17942748
Tgm2Rat17beta-estradiol increases expressionISOTGM2 (Homo sapiens)6480464Estradiol results in increased expression of TGM2 mRNACTDPMID:19619570 more ...
Tgm2Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of TGM2 mRNACTDPMID:32145629
Tgm2Rat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in decreased expression of TGM2 mRNACTDPMID:26496021
Tgm2Rat17beta-estradiol increases expressionISOTgm2 (Mus musculus)6480464Estradiol results in increased expression of TGM2 mRNACTDPMID:19484750 and PMID:39298647
Tgm2Rat17beta-estradiol affects expressionISOTGM2 (Homo sapiens)6480464Estradiol affects the expression of TGM2 mRNACTDPMID:14699072
Tgm2Rat17beta-estradiol multiple interactionsISOTGM2 (Homo sapiens)6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in decreased expression of TGM2 mRNA more ...CTDPMID:14699072 more ...
Tgm2Rat2,2',5,5'-tetrachlorobiphenyl decreases expressionISOTGM2 (Homo sapiens)64804642 more ...CTDPMID:36804509
Tgm2Rat2,2',5,5'-tetrachlorobiphenyl increases expressionISOTGM2 (Homo sapiens)64804642 more ...CTDPMID:36804509
Tgm2Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOTGM2 (Homo sapiens)64804647-ketocholesterol inhibits the reaction [Tetrachlorodibenzodioxin results in increased expression of TGM2 mRNA] more ...CTDPMID:10910994 more ...

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Biological Process
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Tgm2Ratapoptotic cell clearance involved_inISOTGM2 (Homo sapiens)1624291 PMID:19628791RGDPMID:19628791
Tgm2Ratblood vessel remodeling  IMP 1579986 RGD 
Tgm2Ratbone development involved_inISSUniProtKB:P511761600115GO_REF:0000024UniProtGO_REF:0000024
Tgm2Ratbranching involved in salivary gland morphogenesis acts_upstream_of_or_withinISOTgm2 (Mus musculus)1624291 PMID:15970210RGDPMID:15970210
Tgm2Ratcellular response to cocaine involved_inISOTGM2 (Homo sapiens)1624291 PMID:32273471RGDPMID:32273471
Tgm2Ratcellular response to dopamine involved_inISOTGM2 (Homo sapiens)1624291 PMID:32273471RGDPMID:32273471
Tgm2Ratcellular response to dopamine involved_inISSUniProtKB:P219801600115GO_REF:0000024UniProtGO_REF:0000024
Tgm2Ratcellular response to serotonin involved_inISOTGM2 (Homo sapiens)1624291 PMID:30867594RGDPMID:30867594
Tgm2Ratcellular response to serotonin involved_inISSUniProtKB:P219801600115GO_REF:0000024UniProtGO_REF:0000024
Tgm2Ratchromatin remodeling involved_inIEAGO:01202951600115GO_REF:0000108GOCGO_REF:0000108
Tgm2Ratdopamine secretion acts_upstream_of_positive_effectISOTGM2 (Homo sapiens)1624291 PMID:32273471RGDPMID:32273471
Tgm2RatG protein-coupled receptor signaling pathway involved_inISOTGM2 (Homo sapiens)1624291 PMID:11013236RGDPMID:11013236
Tgm2Ratgene expression acts_upstream_of_positive_effectISOTGM2 (Homo sapiens)1624291 PMID:30867594RGDPMID:30867594
Tgm2Ratisopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine  IDA 1579955 RGD 
Tgm2Ratisopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine involved_inISOTGM2 (Homo sapiens)1624291 PMID:11013236RGDPMID:11013236
Tgm2Ratnegative regulation of endoplasmic reticulum calcium ion concentration involved_inISOTGM2 (Homo sapiens)1624291 PMID:24349085RGDPMID:24349085
Tgm2Ratnegative regulation of endoplasmic reticulum calcium ion concentration involved_inISOTgm2 (Mus musculus)1624291 PMID:24349085RGDPMID:24349085
Tgm2Ratpeptide cross-linking involved_inISOTGM2 (Homo sapiens)1624291 PMID:12506096 more ...RGDPMID:12506096 more ...
Tgm2Ratphospholipase C-activating G protein-coupled receptor signaling pathway acts_upstream_of_or_withinIDA 8553754PMID:7911253MGI 
Tgm2Ratphospholipase C-activating G protein-coupled receptor signaling pathway involved_inIBAPANTHER:PTN008521254 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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Cellular Component
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Tgm2Ratchromatin located_inISSUniProtKB:P219801600115GO_REF:0000024UniProtGO_REF:0000024
Tgm2Ratchromatin located_inISOTGM2 (Homo sapiens)1624291 PMID:9575137RGDPMID:9575137
Tgm2Ratchromosome located_inIEAUniProtKB-SubCell:SL-04681600115GO_REF:0000044UniProtGO_REF:0000044
Tgm2Ratchromosome located_inIEAUniProtKB-KW:KW-01581600115GO_REF:0000043UniProtGO_REF:0000043
Tgm2Ratcytoplasm located_inIDA 8553754PMID:7911253MGI 
Tgm2Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Tgm2Ratcytosol located_inISOTGM2 (Homo sapiens)1624291 PMID:24349085 and PMID:9575137RGDPMID:24349085 and PMID:9575137
Tgm2Ratcytosol located_inIDA 634391PMID:11073883UniProt 
Tgm2Ratcytosol located_inISOTGM2 (Homo sapiens) and UniProtKB:P21980-11624291 RGDGO_REF:0000052
Tgm2Ratcytosol located_inIEAUniProtKB-SubCell:SL-00911600115GO_REF:0000044UniProtGO_REF:0000044
Tgm2Ratendoplasmic reticulum located_inIEAGO:00324711600115GO_REF:0000108GOCGO_REF:0000108
Tgm2Ratextracellular matrix located_inISOTGM2 (Homo sapiens)1624291 PMID:12506096 and PMID:28198360RGDPMID:12506096 and PMID:28198360
Tgm2Ratextracellular region located_inIEAUniProtKB-KW:KW-09641600115GO_REF:0000043UniProtGO_REF:0000043
Tgm2Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Tgm2Ratmitochondrion located_inIEAUniProtKB-SubCell:SL-01731600115GO_REF:0000044UniProtGO_REF:0000044
Tgm2Ratmitochondrion is_active_inIBAPANTHER:PTN008521254 and UniProtKB:P219801600115GO_REF:0000033GO_CentralGO_REF:0000033
Tgm2Ratmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
Tgm2Ratmitochondrion located_inISOTGM2 (Homo sapiens)1624291 PMID:24349085RGDPMID:24349085
Tgm2Ratnucleosome part_ofISOTGM2 (Homo sapiens)1624291 PMID:30867594 and PMID:32273471RGDPMID:30867594 and PMID:32273471
Tgm2Ratnucleus located_inISOTGM2 (Homo sapiens)1624291 PMID:9575137RGDPMID:9575137
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Molecular Function
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Original Reference(s)
Tgm2Ratacyltransferase activity enablesIEAUniProtKB-KW:KW-00121600115GO_REF:0000043UniProtGO_REF:0000043
Tgm2Ratcalcium ion binding enablesISOTGM2 (Homo sapiens)1624291 PMID:23941696RGDPMID:23941696
Tgm2Ratcalcium ion binding enablesISSUniProtKB:P219801600115GO_REF:0000024UniProtGO_REF:0000024
Tgm2Ratenzyme binding  ICGO:00512601579955 RGD 
Tgm2RatGTP binding  IDA 1579990 RGD 
Tgm2RatGTP binding enablesIEAUniProtKB-KW:KW-03421600115GO_REF:0000043UniProtGO_REF:0000043
Tgm2RatGTP binding enablesISOTGM2 (Homo sapiens)1624291 PMID:7649299RGDPMID:7649299
Tgm2Rathistone dopaminyltransferase activity enablesISOTGM2 (Homo sapiens)1624291 PMID:32273471RGDPMID:32273471
Tgm2Rathistone dopaminyltransferase activity enablesISSUniProtKB:P219801600115GO_REF:0000024UniProtGO_REF:0000024
Tgm2Rathistone serotonyltransferase activity enablesISSUniProtKB:P219801600115GO_REF:0000024UniProtGO_REF:0000024
Tgm2Rathistone serotonyltransferase activity enablesISOTGM2 (Homo sapiens)1624291 PMID:30867594RGDPMID:30867594
Tgm2Rathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Tgm2Ratidentical protein binding  IPITgm2 (Rattus norvegicus)1579955homooligomerizationRGD 
Tgm2Ratidentical protein binding  IPITgm2 (Rattus norvegicus)1580016homooligomerizationRGD 
Tgm2Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Tgm2Ratnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Tgm2Ratpeptidase activity enablesIEAUniProtKB-KW:KW-06451600115GO_REF:0000043UniProtGO_REF:0000043
Tgm2Ratpeptide histaminyltransferase activity enablesISOTGM2 (Homo sapiens)1624291 PMID:23797785RGDPMID:23797785
Tgm2Ratpeptide histaminyltransferase activity enablesISSUniProtKB:P219801600115GO_REF:0000024UniProtGO_REF:0000024
Tgm2Ratphospholipase binding  IPIPlcd1 (Rattus norvegicus)2300424 RGD 
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Imported Annotations - KEGG (archival)

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Tgm2RatHuntington's disease pathway   IEArno:050406907045 KEGGrno:05016

Imported Annotations - PID (archival)

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Tgm2Rateicosanoid signaling pathway  ISOTGM2 (Homo sapiens)6484113 PIDPID:200082

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#
Reference Title
Reference Citation
1. Tissue transglutaminase catalyzes the formation of alpha-synuclein crosslinks in Parkinson's disease. Andringa G, etal., FASEB J. 2004 May;18(7):932-4. Epub 2004 Mar 4.
2. Small artery remodeling depends on tissue-type transglutaminase. Bakker EN, etal., Circ Res. 2005 Jan 7;96(1):119-26. Epub 2004 Nov 18.
3. Role of transglutaminase 2 in glucose tolerance: knockout mice studies and a putative mutation in a MODY patient. Bernassola F, etal., FASEB J. 2002 Sep;16(11):1371-8.
4. Intron-exon swapping of transglutaminase mRNA and neuronal Tau aggregation in Alzheimer's disease. Citron BA, etal., J Biol Chem. 2001 Feb 2;276(5):3295-301. Epub 2000 Sep 29.
5. Functional coupling of rat myometrial alpha 1-adrenergic receptors to Gh alpha/tissue transglutaminase 2 during pregnancy. Dupuis M, etal., J Biol Chem. 2004 Apr 30;279(18):19257-63. Epub 2004 Feb 17.
6. Immunohistochemical study of the apoptotic mechanisms in the intestinal mucosa during children's coeliac disease. Ehrmann J Jr, etal., Virchows Arch. 2003 May;442(5):453-61. Epub 2003 Apr 16.
7. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8. Tissue transglutaminase and its substrates in bone. Kaartinen MT, etal., J Bone Miner Res. 2002 Dec;17(12):2161-73.
9. Modulation of intracellular Ca(2+) via alpha(1B)-adrenoreceptor signaling molecules, G alpha(h) (transglutaminase II) and phospholipase C-delta 1. Kang SK, etal., Biochem Biophys Res Commun 2002 Apr 26;293(1):383-90.
10. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
11. IFN-gamma induces transglutaminase 2 expression in rat small intestinal cells. Kim SY, etal., J Interferon Cytokine Res 2002 Jun;22(6):677-82.
12. Mitochondrial aconitase is a transglutaminase 2 substrate: transglutamination is a probable mechanism contributing to high-molecular-weight aggregates of aconitase and loss of aconitase activity in Huntington disease brain. Kim SY, etal., Neurochem Res. 2005 Oct;30(10):1245-55.
13. Transglutaminase 2 induces nuclear factor-kappaB activation via a novel pathway in BV-2 microglia. Lee J, etal., J Biol Chem. 2004 Dec 17;279(51):53725-35. Epub 2004 Oct 7.
14. Contribution of tissue transglutaminase to the severity of hepatic fibrosis resulting from Schistosoma japonicum infection through the regulation of IL-33/ST2 expression. Li ZY, etal., Parasit Vectors. 2019 Jun 14;12(1):302. doi: 10.1186/s13071-019-3542-4.
15. A novel follicle-stimulating hormone-induced G alpha h/phospholipase C-delta1 signaling pathway mediating rat sertoli cell Ca2+-influx. Lin YF, etal., Mol Endocrinol. 2006 Oct;20(10):2514-27. Epub 2006 May 18.
16. Increase in extracellular cross-linking by tissue transglutaminase and reduction in expression of MMP-9 contribute differentially to focal segmental glomerulosclerosis in rats. Liu S, etal., Mol Cell Biochem. 2006 Mar;284(1-2):9-17. Epub 2006 Feb 14.
17. Prognostic significance of tissue transglutaminase in drug resistant and metastatic breast cancer. Mehta K, etal., Clin Cancer Res. 2004 Dec 1;10(23):8068-76.
18. Abnormal accumulation of tTGase products in muscle and erythrocytes of chorea-acanthocytosis patients. Melone MA, etal., J Neuropathol Exp Neurol. 2002 Oct;61(10):841-8.
19. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
20. Phosphorylation of histones by tissue transglutaminase. Mishra S, etal., J Biol Chem. 2006 Mar 3;281(9):5532-8. Epub 2006 Jan 4.
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PMID:2578891   PMID:8105889   PMID:11274171   PMID:15147523   PMID:15581620   PMID:15970210   PMID:16522628   PMID:16707846   PMID:17179049   PMID:17347495   PMID:17657163   PMID:18008394  
PMID:18041095   PMID:19056867   PMID:19614676   PMID:19628791   PMID:19635990   PMID:20004474   PMID:20049854   PMID:20157411   PMID:20448147   PMID:20507850   PMID:20615646   PMID:20817067  
PMID:21067463   PMID:21423176   PMID:22034513   PMID:22183397   PMID:22222252   PMID:22252490   PMID:22382775   PMID:22573678   PMID:22762273   PMID:23001131   PMID:23117658   PMID:23466870  
PMID:23469180   PMID:23533145   PMID:23979707   PMID:24291354   PMID:24349085   PMID:24721796   PMID:24821315   PMID:25143942   PMID:25201980   PMID:25599570   PMID:26603619   PMID:27438265  
PMID:28754379   PMID:29197584   PMID:29282083   PMID:30239049   PMID:30458214   PMID:30943188   PMID:31322240   PMID:33808023   PMID:35041708  



Tgm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83167,192,612 - 167,221,845 (-)NCBIGRCr8
mRatBN7.23146,772,684 - 146,801,924 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3146,772,687 - 146,801,981 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3150,598,013 - 150,627,250 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03159,097,613 - 159,126,553 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03156,839,077 - 156,868,039 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03154,597,165 - 154,627,257 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3154,597,168 - 154,627,257 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03160,977,905 - 161,007,261 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43148,832,866 - 148,862,385 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13148,738,777 - 148,768,294 (-)NCBI
Celera3145,473,663 - 145,503,117 (-)NCBICelera
Cytogenetic Map3q42NCBI
TGM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382038,127,385 - 38,168,475 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2038,127,385 - 38,166,578 (-)EnsemblGRCh38hg38GRCh38
GRCh372036,755,787 - 36,794,910 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362036,190,277 - 36,227,114 (-)NCBINCBI36Build 36hg18NCBI36
Build 342036,199,764 - 36,227,114NCBI
Celera2033,465,637 - 33,502,475 (-)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2033,493,671 - 33,530,533 (-)NCBIHuRef
CHM1_12036,660,115 - 36,696,950 (-)NCBICHM1_1
T2T-CHM13v2.02039,852,468 - 39,893,578 (-)NCBIT2T-CHM13v2.0
Tgm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392157,958,325 - 157,988,312 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2157,958,322 - 157,988,356 (-)EnsemblGRCm39 Ensembl
GRCm382158,116,405 - 158,146,392 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2158,116,402 - 158,146,436 (-)EnsemblGRCm38mm10GRCm38
MGSCv372157,942,141 - 157,972,128 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362157,807,846 - 157,837,833 (-)NCBIMGSCv36mm8
Celera2164,061,515 - 164,091,498 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map278.72NCBI
Tgm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544518,544,183 - 18,576,570 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544518,544,192 - 18,576,576 (+)NCBIChiLan1.0ChiLan1.0
TGM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22143,851,557 - 43,889,993 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12043,844,655 - 43,881,956 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02034,450,845 - 34,488,106 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12035,561,819 - 35,599,099 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2035,561,819 - 35,599,042 (-)Ensemblpanpan1.1panPan2
TGM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12426,631,339 - 26,662,723 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2426,628,009 - 26,663,840 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2426,277,181 - 26,308,444 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02427,327,862 - 27,359,126 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2427,295,164 - 27,359,267 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12426,602,350 - 26,633,607 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02426,710,189 - 26,741,409 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02427,198,294 - 27,229,594 (-)NCBIUU_Cfam_GSD_1.0
Tgm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640175,541,933 - 175,571,217 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365613,178,293 - 3,207,561 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365613,178,244 - 3,207,551 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TGM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1741,186,770 - 41,221,637 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11741,186,765 - 41,221,686 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21746,592,093 - 46,629,982 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TGM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1225,585,827 - 25,623,961 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl225,585,865 - 25,624,280 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605074,426,778 - 74,465,107 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tgm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248421,491,584 - 1,522,287 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248421,491,583 - 1,522,293 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Tgm2
195 total Variants

Predicted Target Of
Summary Value
Count of predictions:594
Count of miRNA genes:247
Interacting mature miRNAs:311
Transcripts:ENSRNOT00000018328
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 42 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145956084157309487Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat

1 to 10 of 42 rows
RH129789  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23146,772,702 - 146,772,886 (+)MAPPERmRatBN7.2
Rnor_6.03154,597,184 - 154,597,367NCBIRnor6.0
Rnor_5.03161,007,059 - 161,007,242UniSTSRnor5.0
RGSC_v3.43148,832,885 - 148,833,068UniSTSRGSC3.4
Celera3145,473,682 - 145,473,865UniSTS
RH 3.4 Map31358.9UniSTS
Cytogenetic Map3q42UniSTS
Tgm2  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr83167,204,009 - 167,204,664 (+)Marker Load Pipeline
mRatBN7.23146,784,087 - 146,784,742 (+)MAPPERmRatBN7.2
Rnor_6.03154,608,553 - 154,609,207NCBIRnor6.0
Rnor_5.03160,995,219 - 160,995,873UniSTSRnor5.0
RGSC_v3.43148,844,264 - 148,844,918UniSTSRGSC3.4
Celera3145,485,061 - 145,485,715UniSTS
Cytogenetic Map3q42UniSTS
RH128073  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23146,772,859 - 146,773,061 (+)MAPPERmRatBN7.2
Rnor_6.03154,597,341 - 154,597,542NCBIRnor6.0
Rnor_5.03161,006,884 - 161,007,085UniSTSRnor5.0
RGSC_v3.43148,833,042 - 148,833,243UniSTSRGSC3.4
Celera3145,473,839 - 145,474,040UniSTS
Cytogenetic Map3q42UniSTS
UniSTS:466074  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23146,780,187 - 146,780,256 (+)MAPPERmRatBN7.2
Rnor_6.03154,604,655 - 154,604,723NCBIRnor6.0
Rnor_5.03160,999,702 - 160,999,771NCBIRnor5.0
RGSC_v3.43148,840,366 - 148,840,434UniSTSRGSC3.4
Celera3145,481,163 - 145,481,231UniSTS
Cytogenetic Map3q42UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000018328   ⟹   ENSRNOP00000018328
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3146,772,687 - 146,801,981 (-)Ensembl
Rnor_6.0 Ensembl3154,597,168 - 154,627,257 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095177   ⟹   ENSRNOP00000083472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3146,772,687 - 146,799,157 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097236   ⟹   ENSRNOP00000085355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3146,772,687 - 146,799,027 (-)Ensembl
RefSeq Acc Id: NM_019386   ⟹   NP_062259
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83167,192,612 - 167,221,845 (-)NCBI
mRatBN7.23146,772,684 - 146,801,924 (-)NCBI
Rnor_6.03154,597,165 - 154,627,257 (-)NCBI
Rnor_5.03160,977,905 - 161,007,261 (+)NCBI
RGSC_v3.43148,832,866 - 148,862,385 (-)RGD
Celera3145,473,663 - 145,503,117 (-)RGD
Sequence:
RefSeq Acc Id: XM_039105740   ⟹   XP_038961668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83167,192,612 - 167,204,583 (-)NCBI
mRatBN7.23146,772,684 - 146,784,661 (-)NCBI
1 to 10 of 10 rows
Protein RefSeqs NP_062259 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961668 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD42046 (Get FASTA)   NCBI Sequence Viewer  
  AAH62062 (Get FASTA)   NCBI Sequence Viewer  
  AJD87522 (Get FASTA)   NCBI Sequence Viewer  
  EDL96658 (Get FASTA)   NCBI Sequence Viewer  
  EDL96659 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018328.5
  ENSRNOP00000083472
GenBank Protein Q9WVJ6 (Get FASTA)   NCBI Sequence Viewer  
1 to 10 of 10 rows
RefSeq Acc Id: NP_062259   ⟸   NM_019386
- UniProtKB: Q9WVJ6 (UniProtKB/Swiss-Prot),   Q6P6R6 (UniProtKB/Swiss-Prot),   A0A8I6GAT6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018328   ⟸   ENSRNOT00000018328
RefSeq Acc Id: XP_038961668   ⟸   XM_039105740
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000083472   ⟸   ENSRNOT00000095177
Ensembl Acc Id: ENSRNOP00000085355   ⟸   ENSRNOT00000097236
Transglutaminase-like

Name Modeler Protein Id AA Range Protein Structure
AF-Q9WVJ6-F1-model_v2 AlphaFold Q9WVJ6 1-686 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692618
Promoter ID:EPDNEW_R3142
Type:multiple initiation site
Name:Tgm2_1
Description:transglutaminase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03154,627,266 - 154,627,326EPDNEW


1 to 40 of 43 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-47037 BioCyc
Ensembl Genes ENSRNOG00000012956 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000014424 ENTREZGENE
Ensembl Transcript ENSRNOT00000018328.6 UniProtKB/Swiss-Prot
  ENSRNOT00000095177 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
  3.90.260.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5599202 IMAGE-MGC_LOAD
InterPro Ig-like_fold UniProtKB/Swiss-Prot
  Ig_E-set UniProtKB/Swiss-Prot
  Papain-like_cys_pep_sf UniProtKB/Swiss-Prot
  Transglutaminase UniProtKB/Swiss-Prot
  Transglutaminase-like UniProtKB/Swiss-Prot
  Transglutaminase-like_sf UniProtKB/Swiss-Prot
  Transglutaminase_animal UniProtKB/Swiss-Prot
  Transglutaminase_AS UniProtKB/Swiss-Prot
  Transglutaminase_C UniProtKB/Swiss-Prot
  Transglutaminase_C_sf UniProtKB/Swiss-Prot
  Transglutaminase_N UniProtKB/Swiss-Prot
KEGG Report rno:56083 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72474 IMAGE-MGC_LOAD
NCBI Gene 56083 ENTREZGENE
PANTHER PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE UniProtKB/Swiss-Prot
  PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE 2 UniProtKB/Swiss-Prot
Pfam Transglut_C UniProtKB/Swiss-Prot
  Transglut_core UniProtKB/Swiss-Prot
  Transglut_N UniProtKB/Swiss-Prot
PhenoGen Tgm2 PhenoGen
PIRSF TGM_EBP42 UniProtKB/Swiss-Prot
PROSITE TRANSGLUTAMINASES UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012956 RatGTEx
  ENSRNOG00000014424 RatGTEx
SMART TGc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49309 UniProtKB/Swiss-Prot
  SSF54001 UniProtKB/Swiss-Prot
  SSF81296 UniProtKB/Swiss-Prot
UniProt A0A0B5AGL6_RAT UniProtKB/TrEMBL
  A0A8I6A1G8_RAT UniProtKB/TrEMBL
  A0A8I6GAT6 ENTREZGENE, UniProtKB/TrEMBL
  A6JWV1_RAT UniProtKB/TrEMBL
1 to 40 of 43 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-13 Tgm2  transglutaminase 2  Tgm2  transglutaminase 2, C polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Tgm2  transglutaminase 2, C polypeptide    tissue-type transglutaminase  Name updated 1299863 APPROVED
2002-08-07 Tgm2  tissue-type transglutaminase      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_expression expressed only in adult aorta 634391
gene_process mediates smooth muscle cell (SMC) apoptosis 634391
gene_regulation expression in the IEC-6 small intestinal epithelial cell line is reduced 4.5-fold after 24 hours of treatment with TGF-beta, and increased 2-fold after 24 hours and 5-fold after 5 days of treatment with IFN-gamma 634392