Rps16 (ribosomal protein S16) - Rat Genome Database

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Gene: Rps16 (ribosomal protein S16) Rattus norvegicus
Analyze
Symbol: Rps16
Name: ribosomal protein S16
RGD ID: 621031
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in liver regeneration. Part of cytosolic small ribosomal subunit. Orthologous to human RPS16 (ribosomal protein S16); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S16; small ribosomal subunit protein uS9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,770,658 - 92,773,603 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1956,922,246 - 56,923,020 (+)EnsemblGRCr8
GRCr8 Ensembl192,770,658 - 92,773,603 (+)EnsemblGRCr8
mRatBN7.2183,643,066 - 83,646,056 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1940,013,001 - 40,013,775 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl183,643,130 - 83,646,206 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx189,053,520 - 89,056,460 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0197,512,017 - 97,514,955 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0190,809,390 - 90,812,330 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0185,405,499 - 85,408,444 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl185,405,512 - 85,408,444 (-)Ensemblrn6Rnor6.0
Rnor_5.0186,620,608 - 86,623,555 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4183,444,204 - 83,463,592 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera178,039,401 - 78,042,346 (+)NCBICelera
RGSC_v3.1183,538,778 - 83,541,448 (+)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetylsalicylic acid  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
Butylbenzyl phthalate  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cocaine  (EXP)
Cuprizon  (ISO)
deoxynivalenol  (ISO)
diazinon  (ISO)
diethyl phthalate  (EXP)
disodium selenite  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
folic acid  (ISO)
furfural  (ISO)
genistein  (ISO)
glafenine  (EXP)
glyphosate  (EXP)
haloperidol  (ISO)
indometacin  (EXP)
ivermectin  (ISO)
lead(0)  (ISO)
methylparaben  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
paracetamol  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Molecular cloning and sequence analysis of the human ribosomal protein S16. Batra SK, etal., J Biol Chem. 1991 Apr 15;266(11):6830-3.
3. The primary structure of rat ribosomal protein S16. Chan YL, etal., FEBS Lett 1990 Apr 9;263(1):85-8.
4. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
5. Coordinate regulation of ribosomal protein mRNA level in regenerating rat liver. Study with the corresponding mouse cloned cDNAs. Faliks D and Meyuhas O, Nucleic Acids Res. 1982 Feb 11;10(3):789-801.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Immunoelectron microscopic studies on the location of ribosomal proteins on the surface of the 40S ribosomal subunit from rat liver. Lutsch G, etal., Eur J Cell Biol. 1990 Feb;51(1):140-50.
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8706699   PMID:12477932   PMID:15883184   PMID:17881366   PMID:18697920   PMID:19946888   PMID:20439489   PMID:20458337   PMID:21423176   PMID:22681889   PMID:23106098   PMID:23979707  
PMID:24625528   PMID:24930395   PMID:26316108   PMID:29476059   PMID:30053369  


Genomics

Comparative Map Data
Rps16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,770,658 - 92,773,603 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1956,922,246 - 56,923,020 (+)EnsemblGRCr8
GRCr8 Ensembl192,770,658 - 92,773,603 (+)EnsemblGRCr8
mRatBN7.2183,643,066 - 83,646,056 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1940,013,001 - 40,013,775 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl183,643,130 - 83,646,206 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx189,053,520 - 89,056,460 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0197,512,017 - 97,514,955 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0190,809,390 - 90,812,330 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0185,405,499 - 85,408,444 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl185,405,512 - 85,408,444 (-)Ensemblrn6Rnor6.0
Rnor_5.0186,620,608 - 86,623,555 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4183,444,204 - 83,463,592 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera178,039,401 - 78,042,346 (+)NCBICelera
RGSC_v3.1183,538,778 - 83,541,448 (+)NCBI
Cytogenetic Map1q21NCBI
RPS16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381939,433,137 - 39,435,949 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1939,433,136 - 39,436,131 (-)Ensemblhg38GRCh38
GRCh371939,923,777 - 39,926,589 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,615,687 - 44,618,458 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341944,615,691 - 44,618,478NCBI
Celera1936,725,537 - 36,728,308 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1936,370,438 - 36,373,209 (-)NCBIHuRef
CHM1_11939,924,493 - 39,927,264 (-)NCBICHM1_1
T2T-CHM13v2.01942,237,400 - 42,240,212 (-)NCBIT2T-CHM13v2.0
Rps16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,050,114 - 28,052,123 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl728,050,077 - 28,052,580 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38728,350,689 - 28,352,698 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,350,652 - 28,353,155 (+)Ensemblmm10GRCm38
MGSCv37729,135,708 - 29,137,717 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36728,059,510 - 28,061,456 (+)NCBIMGSCv36mm8
Celera722,912,329 - 22,914,338 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map716.7NCBI
Rps16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955468130,244 - 132,258 (+)Ensembl
ChiLan1.0NW_004955468130,244 - 132,258 (+)NCBIChiLan1.0ChiLan1.0
RPS16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22045,728,537 - 45,731,388 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11947,599,040 - 47,601,911 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01936,531,284 - 36,534,156 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11945,079,106 - 45,081,985 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1945,079,106 - 45,085,351 (-)EnsemblpanPan2panpan1.1
RPS16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,795,239 - 113,798,380 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,644,100 - 113,828,488 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1113,198,999 - 113,202,134 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01114,396,221 - 114,399,355 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1114,396,295 - 114,429,130 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11113,955,179 - 113,958,155 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01113,588,188 - 113,591,111 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01114,582,841 - 114,585,969 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rps16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,843,678 - 13,846,698 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366612,271,396 - 2,274,965 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366612,271,747 - 2,274,769 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,085,678 - 48,088,423 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1648,085,684 - 48,088,368 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214143,655,447 - 143,658,128 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1634,039,470 - 34,042,278 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl634,039,251 - 34,042,313 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607312,060,718 - 12,063,569 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479412,754,849 - 12,760,528 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462479412,758,224 - 12,760,482 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rps16
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12167,640,506 - 167,643,115 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rps16
26 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:35
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000026576
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat

Markers in Region
RH134025  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001169146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC064030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC084715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC159438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000026576   ⟹   ENSRNOP00000026576
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl192,770,658 - 92,773,603 (+)Ensembl
mRatBN7.2 Ensembl183,643,130 - 83,646,206 (+)Ensembl
Rnor_6.0 Ensembl185,405,512 - 85,408,444 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl185,407,402 - 85,408,423 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl185,405,751 - 85,406,493 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093558   ⟹   ENSRNOP00000076119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl192,770,658 - 92,773,603 (+)Ensembl
mRatBN7.2 Ensembl183,643,130 - 83,646,206 (+)Ensembl
Rnor_6.0 Ensembl185,405,773 - 85,408,413 (-)Ensembl
RefSeq Acc Id: NM_001169146   ⟹   NP_001162617
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,770,658 - 92,773,603 (+)NCBI
mRatBN7.2183,643,111 - 83,646,056 (+)NCBI
Rnor_6.0185,405,499 - 85,408,444 (-)NCBI
Rnor_5.0186,620,608 - 86,623,555 (-)NCBI
Celera178,039,401 - 78,042,346 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001162617 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH64030 (Get FASTA)   NCBI Sequence Viewer  
  AAH84715 (Get FASTA)   NCBI Sequence Viewer  
  AAI59439 (Get FASTA)   NCBI Sequence Viewer  
  EDM07900 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000026576
GenBank Protein P62250 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001162617   ⟸   NM_001169146
- UniProtKB: P62250 (UniProtKB/Swiss-Prot),   A6J9I3 (UniProtKB/TrEMBL),   A0A8I5YCD9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000026576   ⟸   ENSRNOT00000026576
Ensembl Acc Id: ENSRNOP00000076119   ⟸   ENSRNOT00000093558

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62250-F1-model_v2 AlphaFold P62250 1-146 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689875
Promoter ID:EPDNEW_R398
Type:multiple initiation site
Name:Rps16_1
Description:ribosomal protein S16
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0185,408,426 - 85,408,486EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621031 AgrOrtholog
BioCyc Gene G2FUF-60250 BioCyc
Ensembl Genes ENSRNOG00000019578 Ensembl, ENTREZGENE
  ENSRNOG00000031439 Ensembl
Ensembl Transcript ENSRNOT00000026576 ENTREZGENE
Gene3D-CATH 3.30.230.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887619 IMAGE-MGC_LOAD
  IMAGE:7311638 IMAGE-MGC_LOAD
  IMAGE:8375510 IMAGE-MGC_LOAD
InterPro Ribosomal_S5_D2-typ_fold UniProtKB/Swiss-Prot
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/Swiss-Prot
  Ribosomal_S9 UniProtKB/Swiss-Prot
  Ribosomal_S9_CS UniProtKB/Swiss-Prot
KEGG Report rno:140655 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105803 IMAGE-MGC_LOAD
  MGC:188783 IMAGE-MGC_LOAD
  MGC:72948 IMAGE-MGC_LOAD
NCBI Gene 140655 ENTREZGENE
PANTHER PTHR21569 UniProtKB/Swiss-Prot
  RIBOSOMAL PROTEIN S16 UniProtKB/Swiss-Prot
Pfam Ribosomal_S9 UniProtKB/Swiss-Prot
PhenoGen Rps16 PhenoGen
PROSITE RIBOSOMAL_S9 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000019578 RatGTEx
  ENSRNOG00000031439 RatGTEx
Superfamily-SCOP SSF54211 UniProtKB/Swiss-Prot
UniProt A0A1W2Q631_RAT UniProtKB/TrEMBL
  A0A8I5YCD9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QED1_RAT UniProtKB/TrEMBL
  A6J9I3 ENTREZGENE, UniProtKB/TrEMBL
  B0K038_RAT UniProtKB/TrEMBL
  P62250 ENTREZGENE
  Q6P3E1_RAT UniProtKB/TrEMBL
  RS16_RAT UniProtKB/Swiss-Prot
UniProt Secondary P17008 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Rps16  ribosomal protein S16      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rps16  ribosomal protein S16      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_other 11-13 copies of the gene 634013
gene_protein 145 amino acids 634013