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Gene: Gosr2 (golgi SNAP receptor complex member 2) Rattus norvegicus

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Symbol:

Gosr2

Name:

golgi SNAP receptor complex member 2

RGD ID:

62079

Description:

Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intra-Golgi vesicle-mediated transport and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Part of SNARE complex. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 6. Orthologous to human GOSR2 (golgi SNAP receptor complex member 2); PARTICIPATES IN Arf family mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

27 kDa Golgi SNARE protein; magmas; membrin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GOSR2 (golgi SNAP receptor complex member 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Gosr2 (golgi SNAP receptor complex member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gosr2 (golgi SNAP receptor complex member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GOSR2 (golgi SNAP receptor complex member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GOSR2 (golgi SNAP receptor complex member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gosr2 (golgi SNAP receptor complex member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GOSR2 (golgi SNAP receptor complex member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GOSR2 (golgi SNAP receptor complex member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gosr2 (golgi SNAP receptor complex member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Gosr2 (golgi SNAP receptor complex member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GOSR2 (golgi SNAP receptor complex member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gosr2 (golgi SNAP receptor complex member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BOS1	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Membrin	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	memb-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	memb-2	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	memb-2	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gosr2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	89,085,323 - 89,105,665 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	89,086,331 - 89,105,637 (-)	Ensembl				GRCr8
mRatBN7.2	10	88,585,291 - 88,605,642 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	88,586,299 - 88,605,625 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	93,624,694 - 93,644,020 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	93,089,832 - 93,109,168 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	88,483,187 - 88,502,522 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	91,735,772 - 91,756,123 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	91,736,780 - 91,756,081 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	91,503,271 - 91,522,573 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	92,830,987 - 92,850,289 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	87,285,744 - 87,305,046 (-)	NCBI		Celera
RGSC_v3.1	10	92,845,357 - 92,864,659 (-)	NCBI
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

MUSCULAR DYSTROPHY, CONGENITAL, WITH OR WITHOUT SEIZURES (ISO)

progressive myoclonus epilepsy (ISO)

progressive myoclonus epilepsy 6 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

acrolein (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

bortezomib (ISO)

C60 fullerene (EXP)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chromium(6+) (ISO)

clofibrate (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

disulfiram (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

glafenine (EXP)

glycerol (ISO)

hydroquinone (ISO)

ivermectin (ISO)

lead diacetate (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (ISO)

niclosamide (ISO)

nicotine (ISO)

nitrates (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

propane-1,2-diol (ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

tetrachloro-1,4-benzoquinone (ISO)

tetrachloromethane (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endoplasmic reticulum to Golgi vesicle-mediated transport (ISO)

intra-Golgi vesicle-mediated transport (IBA,IEA,ISO,ISS)

membrane fusion (IEA)

protein transport (IEA)

vesicle fusion (IBA)

vesicle-mediated transport (IEA,ISO)

Cellular Component

cytoplasm (IEA)

endoplasmic reticulum membrane (IBA,IEA,ISO)

ER to Golgi transport vesicle membrane (IBA)

Golgi apparatus (IBA,IEA,ISO)

Golgi membrane (IEA,ISO,ISS)

late endosome membrane (IBA)

membrane (IEA)

SNARE complex (IBA,IDA)

Molecular Function

protein binding (ISO)

SNAP receptor activity (IBA,IEA)

SNARE binding (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

Arf family mediated signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Protein interactions regulating vesicle transport between the endoplasmic reticulum and Golgi apparatus in mammalian cells.	Hay JC, etal., Cell 1997 Apr 4;89(1):149-58.
4.	A SNARE involved in protein transport through the Golgi apparatus.	Lowe SL, etal., Nature 1997 Oct 23;389(6653):881-4.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data

Additional References at PubMed

PMID:11323436	PMID:15984936	PMID:16081076	PMID:19946888

Genomics

Comparative Map Data

Gosr2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	89,085,323 - 89,105,665 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	89,086,331 - 89,105,637 (-)	Ensembl				GRCr8
mRatBN7.2	10	88,585,291 - 88,605,642 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	88,586,299 - 88,605,625 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	93,624,694 - 93,644,020 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	93,089,832 - 93,109,168 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	88,483,187 - 88,502,522 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	91,735,772 - 91,756,123 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	91,736,780 - 91,756,081 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	91,503,271 - 91,522,573 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	92,830,987 - 92,850,289 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	87,285,744 - 87,305,046 (-)	NCBI		Celera
RGSC_v3.1	10	92,845,357 - 92,864,659 (-)	NCBI
Cytogenetic Map	10	q32.1	NCBI

GOSR2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	46,923,160 - 46,975,890 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	46,923,075 - 46,975,524 (+)	Ensembl			hg38	GRCh38
GRCh37	17	45,000,526 - 45,044,366 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	42,355,485 - 42,373,732 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	42,355,484 - 42,373,731	NCBI
Celera	17	41,450,000 - 41,468,246 (+)	NCBI		Celera
Cytogenetic Map	17	q21.32	NCBI
HuRef	17	40,378,679 - 40,396,926 (+)	NCBI		HuRef
CHM1_1	17	45,064,613 - 45,082,858 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	47,784,606 - 47,837,321 (+)	NCBI		T2T-CHM13v2.0

Gosr2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	103,567,675 - 103,590,139 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	103,567,675 - 103,588,724 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	103,676,849 - 103,697,723 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	103,676,849 - 103,697,898 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	103,538,163 - 103,559,024 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	103,492,949 - 103,513,784 (-)	NCBI		MGSCv36	mm8
Celera	11	115,389,487 - 115,410,387 (-)	NCBI		Celera
Cytogenetic Map	11	E1	NCBI
cM Map	11	67.43	NCBI

Gosr2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	10,868,912 - 10,889,405 (+)	Ensembl
ChiLan1.0	NW_004955478	10,868,912 - 10,889,405 (+)	NCBI	ChiLan1.0	ChiLan1.0

GOSR2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	18,049,772 - 18,093,911 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	20,015,680 - 20,060,277 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	10,561,574 - 10,580,489 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	10,715,176 - 10,759,013 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	10,715,452 - 10,759,004 (-)	Ensembl			panPan2	panpan1.1

GOSR2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	10,201,625 - 10,220,688 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	10,077,702 - 10,096,752 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	11,791,873 - 11,810,998 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	11,792,187 - 11,812,043 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	10,802,761 - 10,821,885 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	16,700,143 - 16,719,222 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	16,647,474 - 16,666,579 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Gosr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	17,328,552 - 17,349,665 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	1,839,045 - 1,866,074 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	1,845,501 - 1,866,014 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GOSR2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	17,768,111 - 17,789,315 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	17,768,082 - 17,799,313 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	17,854,276 - 17,875,499 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GOSR2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	60,630,505 - 60,664,596 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	60,630,509 - 60,646,133 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	31,354,272 - 31,390,259 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gosr2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624849	3,009,505 - 3,027,501 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624849	3,006,497 - 3,029,334 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Gosr2
333 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	206
Count of miRNA genes:	142
Interacting mature miRNAs:	172
Transcripts:	ENSRNOT00000005046
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	51071897	96071897	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
631555	Bp134	Blood pressure QTL 134		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	81012077	91729860	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	54296336	99451733	Rat
4889948	Bss91	Bone structure and strength QTL 91	4		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	10	83061236	92869129	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50464802	95464802	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76951790	107713808	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	79272424	102982300	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
10450495	Bp383	Blood pressure QTL 383		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76743133	95464802	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50860288	95860288	Rat
2313856	Bp342	Blood pressure QTL 342	4.4	0.0001	life span trait (VT:0005372)	age at time of death (CMO:0001193)	10	87807758	96620484	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87807758	107713808	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	67241334	98502431	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61843496	98710773	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	73695339	97272278	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	81012077	101828297	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	73049656	94495280	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	49495492	94495492	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	89039175	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	88900501	96620484	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	55307972	93608131	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61843496	100198886	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49943710	94943710	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61843496	100198886	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47869129	92869129	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
12880055	Am11	Aortic mass QTL 11		0.004	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	84503487	96432422	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76743133	95604677	Rat
2301398	Kidm38	Kidney mass QTL 38		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	84503487	96432422	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50604677	95604677	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73950353	96620293	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	76128947	107713808	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

D10Got132

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	88,594,462 - 88,594,678 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	91,744,944 - 91,745,159	NCBI	Rnor6.0
Rnor_5.0	10	91,511,436 - 91,511,651	UniSTS	Rnor5.0
RGSC_v3.4	10	92,839,151 - 92,839,367	RGD	RGSC3.4
RGSC_v3.4	10	92,839,152 - 92,839,367	UniSTS	RGSC3.4
Celera	10	87,293,909 - 87,294,124	UniSTS
RGSC_v3.1	10	92,853,522 - 92,853,737	RGD
RH 3.4 Map	10	916.8	UniSTS
RH 3.4 Map	10	916.8	RGD
RH 2.0 Map	10	1038.3	RGD
Cytogenetic Map	10	q32.1	UniSTS

AV006767

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	88,602,624 - 88,602,766 (+)	MAPPER	mRatBN7.2
mRatBN7.2	10	10,949,961 - 10,950,518 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	11,153,249 - 11,153,805	NCBI	Rnor6.0
Rnor_6.0	10	91,753,106 - 91,753,247	NCBI	Rnor6.0
Rnor_5.0	10	9,918,607 - 9,919,163	UniSTS	Rnor5.0
Rnor_5.0	10	91,519,598 - 91,519,739	UniSTS	Rnor5.0
RGSC_v3.4	10	92,847,314 - 92,847,455	UniSTS	RGSC3.4
RGSC_v3.4	10	11,079,293 - 11,079,849	UniSTS	RGSC3.4
Celera	10	9,912,221 - 9,912,777	UniSTS
Celera	10	87,302,071 - 87,302,212	UniSTS
Cytogenetic Map	10	q12	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

RH135056

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	88,589,427 - 88,589,642 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	91,739,909 - 91,740,123	NCBI	Rnor6.0
Rnor_5.0	10	91,506,401 - 91,506,615	UniSTS	Rnor5.0
RGSC_v3.4	10	92,834,117 - 92,834,331	UniSTS	RGSC3.4
Celera	10	87,288,874 - 87,289,088	UniSTS
RH 3.4 Map	10	902.8	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF007549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U91539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005046 ⟹ ENSRNOP00000005046

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	89,086,331 - 89,105,632 (-)	Ensembl
mRatBN7.2 Ensembl	10	88,586,299 - 88,605,625 (-)	Ensembl
Rnor_6.0 Ensembl	10	91,736,780 - 91,756,081 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103024 ⟹ ENSRNOP00000087188

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	89,086,331 - 89,098,425 (-)	Ensembl
mRatBN7.2 Ensembl	10	88,586,299 - 88,605,625 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106961 ⟹ ENSRNOP00000081754

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	88,586,301 - 88,598,393 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114651 ⟹ ENSRNOP00000084049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	89,086,752 - 89,105,637 (-)	Ensembl
mRatBN7.2 Ensembl	10	88,586,301 - 88,605,607 (-)	Ensembl

RefSeq Acc Id:

NM_031685 ⟹ NP_113873

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	89,086,330 - 89,105,632 (-)	NCBI
mRatBN7.2	10	88,586,298 - 88,605,600 (-)	NCBI
Rnor_6.0	10	91,736,779 - 91,756,081 (-)	NCBI
Rnor_5.0	10	91,503,271 - 91,522,573 (-)	NCBI
RGSC_v3.4	10	92,830,987 - 92,850,289 (-)	RGD
Celera	10	87,285,744 - 87,305,046 (-)	RGD

Sequence:

show sequence

CTAGGCCGGCATCATGGAGCCACTATACCAACAAACGCACAAGCAGGTCCACGAGATCCAGTCT
CACATGGGACGCCTGGAGACGGCAGACAAGCAGTCTGTGCACTTAGTGGAAAATGAAATCCAAG
CAAGCATAGACCAGATATTCAGCCACCTGGAGCGTCTGGAGATTCTGTCAAGCAAGGAGCCCCC
CAATAGAAGGCAGAACGCCAAACTTCGTGTCGACCAGCTAAAGTACGACGTCCAGCACTTGCAG
ACTGCCCTCAGGAACTTTCAGCACCGGCGCCAAGCCAAGGAGCAGCAGGAGAGACAGCGAGATG
AGCTTCTGTCTCGCACCTTCACCACTAACGACTCTGACACCACCATTCCCATGGATGAATCACT
GCAGTTTAACTCCTCCCTCCAGAACATTCACCACGGCATGGATGACCTCATTGGAGGCGGGCAC
AGTATTCTGGAGGGACTGAGGGCCCAGAGACTGACCTTGAAGGGGACTCAGAAAAAGATCCTCG
ACATTGCCAACATGCTCGGCTTGTCCAACACCGTGATGAGGCTGATTGAGAAGCGGGCCTTCCA
GGACAAGTACTTCATGATCGGTGGGATGCTGCTCACTTGTGCAGTTATGTTTCTCGTGGTGCAG
TACCTGACATGAGCCAGCTGTACCCAGCACTGGACAGCCTTCCCATTGTGTGCGCATGTGCAAG
CAAGAAGTGGGCTGGGAGGCCCTTTTGAAATGTATGCCTTAACTGTGAAGACACCTCTCCCTCC
AGGACTAATCGTGGCTTAGTATCAAACCTGCTTTGTTTTCTGTGACATCTGGGGAGTAGGACCT
AGGGTCACCAAGATGTGTGGTACTTAGGAGGTGGTTCAAGACCCTGTTCTCTGGCTTTCACGGG
GGTGGGGTGGGGTGGGGAGGGATGGCTAGGTTTTGTGGTTTGTCCACACAGCTGATGCAGAGGA
AAGTGTGCATTATGAGGCCTGCACACAGGACTGTCCACTCTGTTCACTTCTGGTCATCACCAGC
TTTTGTGGCTCCTGAGAGGTGGGCTGGAGCACAGTGAGATGAGGAAAGAGGTCTTTCCTTACAC
CATCTGGGATGGATCAGTTCTCACATCCTTGCTTCTAGCCACTACTCGGCCCCAGCCCCTAAGA
AAACAGGACATGTAGGTGACTAACCACGAACACCAGCACCCTTTCCTGGAAGCAGCTACTCCAG
GGAAGCAGAGACATCAGTGCTGCTGCTGATAATGTAAGCGTTTCCGTGCCACGGTTGCTGGGTG
TTTGTCCTTCCTGAAGTGAGGCTAGCAGTGTTCCCAGGGAGTGTTTAGTCTGGACCCTGAAGTC
CTGAGTCACCAGGACTTGATACAGCAATTGGCTCTTGCAGTTCGGAGACAGTGGCTCAGCACCT
CCACCCAGGCTCTGATCTTGGGCCTTTAAAAGGAGCCATGAGCAAAGGGTGACTTGTCAGTTAC
AGATTCATCTAATTCTGCCATCTCAGATCCTTTGACTATCTCTCCCTTGAAATACATTAGCAAT
ATATCAATCAGCTAAGCCTCCATTTTCCCCAGCCCTCGTAGGCCACCCTGGAGGTGTCCCTGGT
AAGAATGTTTTTGTGAGACTGTTTCAGGGACCAGGTCATTCTCACTTGTCCCAGACGTGATTAA
GGCTATGTCAGTACCTGGTGTATTGCAGAATTTGTTTGAAAGTTAATGTATCTCAAGCACACCT
ATTGTGATTAATCTTCGCAAGTACTAGAACGGTCCAGTGAGTTTATTTGTTCATCAGTAACGAG
CCCTGCCCACCCAAACAGTTCTAAATTTAGTAGCCTCCTGGTGGGAAAAACAGATGCCAGGATT
CCTAAGAACTGGAAACTGGTCAGTATTAATCCTTCCTCTGATTGCCCCACCTACTTCCTGTGTT
TGCTTAAGTCCTGTGCTTTTCCCTCCTCACAGTGCACTATGTCTCACCCTCCTACTGAGTTGCA
GTACTCCTCTCTCCCATACGTCTGTGGCATCCTGTCCACATCTGTGGCATCCTTTTGGGAACTG
TCTCAATTGAACACATTTTAAACCTGAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017597520 ⟹ XP_017453009

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	89,085,323 - 89,105,665 (-)	NCBI
mRatBN7.2	10	88,585,291 - 88,605,642 (-)	NCBI
Rnor_6.0	10	91,735,772 - 91,756,123 (-)	NCBI

Sequence:

show sequence

AGTGGGGCTGTGAGGACGTGTTCGGAGGAAGCCGCAGGCCGGCTAGGCCGGCATCATGGAGCCA
CTATACCAACAAACGCACAAGCAGGTCCACGAGATCCAGTCTCACATGGGACGCCTGGAGACGG
CAGACAAGCAGTCTGTGCACTTAGTGGAAAATGAAATCCAAGCAAGCATAGACCAGATATTCAG
CCACCTGGAGCGTCTGGAGATTCTGTCAAGCAAGGAGCCCCCCAATAGAAGGCAGAACGCCAAA
CTTCGTGTCGACCAGCTAAAGTACGACGTCCAGCACTTGCAGACTGCCCTCAGGAACTTTCAGC
ACCGGCGCCAAGCCAAGGAGCAGCAGGAGAGACAGCGAGATGAGCTTCTGTCTCGCACCTTCAC
CACTAACGGGACTCAGAAAAAGATCCTCGACATTGCCAACATGCTCGGCTTGTCCAACACCGTG
ATGAGGCTGATTGAGAAGCGGGCCTTCCAGGACAAGTACTTCATGATCGGTGGGATGCTGCTCA
CTTGTGCAGTTATGTTTCTCGTGGTGCAGTACCTGACATGAGCCAGCTGTACCCAGCACTGGAC
AGCCTTCCCATTGTGTGCGCATGTGCAAGCAAGAAGTGGGCTGGGAGGCCCTTTTGAAATGTAT
GCCTTAACTGTGAAGACACCTCTCCCTCCAGGACTAATCGTGGCTTAGTATCAAACCTGCTTTG
TTTTCTGTGACATCTGGGGAGTAGGACCTAGGGTCACCAAGATGTGTGGTACTTAGGAGGTGGT
TCAAGACCCTGTTCTCTGGCTTTCACGGGGGTGGGGTGGGGTGGGGAGGGATGGCTAGGTTTTG
TGGTTTGTCCACACAGCTGATGCAGAGGAAAGTGTGCATTATGAGGCCTGCACACAGGACTGTC
CACTCTGTTCACTTCTGGTCATCACCAGCTTTTGTGGCTCCTGAGAGGTGGGCTGGAGCACAGT
GAGATGAGGAAAGAGGTCTTTCCTTACACCATCTGGGATGGATCAGTTCTCACATCCTTGCTTC
TAGCCACTACTCGGCCCCAGCCCCTAAGAAAACAGGACATGTAGGTGACTAACCACGAACACCA
GCACCCTTTCCTGGAAGCAGCTACTCCAGGGAAGCAGAGACATCAGTGCTGCTGCTGATAATGT
AAGCGTTTCCGTGCCACGGTTGCTGGGTGTTTGTCCTTCCTGAAGTGAGGCTAGCAGTGTTCCC
AGGGAGTGTTTAGTCTGGACCCTGAAGTCCTGAGTCACCAGGACTTGATACAGCAATTGGCTCT
TGCAGTTCGGAGACAGTGGCTCAGCACCTCCACCCAGGCTCTGATCTTGGGCCTTTAAAAGGAG
CCATGAGCAAAGGGTGACTTGTCAGTTACAGATTCATCTAATTCTGCCATCTCAGATCCTTTGA
CTATCTCTCCCTTGAAATACATTAGCAATATATCAATCAGCTAAGCCTCCATTTTCCCCAGCCC
TCGTAGGCCACCCTGGAGGTGTCCCTGGTAAGAATGTTTTTGTGAGACTGTTTCAGGGACCAGG
TCATTCTCACTTGTCCCAGACGTGATTAAGGCTATGTCAGTACCTGGTGTATTGCAGAATTTGT
TTGAAAGTTAATGTATCTCAAGCACACCTATTGTGATTAATCTTCGCAAGTACTAGAACGGTCC
AGTGAGTTTATTTGTTCATCAGTAACGAGCCCTGCCCACCCAAACAGTTCTAAATTTAGTAGCC
TCCTGGTGGGAAAAACAGATGCCAGGATTCCTAAGAACTGGAAACTGGTCAGTATTAATCCTTC
CTCTGATTGCCCCACCTACTTCCTGTGTTTGCTTAAGTCCTGTGCTTTTCCCTCCTCACAGTGC
ACTATGTCTCACCCTCCTACTGAGTTGCAGTACTCCTCTCTCCCATACGTCTGTGGCATCCTGT
CCACATCTGTGGCATCCTTTTGGGAACTGTCTCAATTGAACACATTTTAAACCTGAGTTTCCTG
GGTACTAGCTTCATTTCTGGTCAGACACAATGTGTCGCTCCTTCCCTTTTGGCTAAATGGGCCA
TAGCTGGCCAGAAAGGCGGAATGTGACCCCTTTAGTAAGAACTGATAGTCATGCAGAGTGGAAA
CAGTGGCCCTAGAAGAGACAGGAGCCTACAGCATCTCCACCAGATCACTTTGGGGGTGCAGATG
GGCATAGGCTCCTTGCTGGCCATGGAGTTCATACTGCACAGACCTGACTGCTGTGCCCCCTGGC
ACCTGGTGACCCCACCAGGCAGCATGCTTTGGACGATGTACAAGCCGTAACGGAGCCATTGGAA
CTCGAAATGTGGGCAGCAAAGGCCCCAGCCCCTGCCCTTCATTGACTGTGGGGCAGTGTTTTGT
AGTACATAATGGTGTATTGCCTTTGTAGCAATCCTTGGCTTCAGTGAACTTGATGTCCCACCCT
CACAGCCAGGTCTCCCTTTGGAATGAAGTTGTGGTGAGGTGGTCAGCATTCCAGCCTGGGGGCA
GGGAGCGGAAGTGGAGGATCTGGACTCCAAGGGGCATTGAGCTGGTTGCCTAGGTTGCTCTCCC
TCGAATTTCCATTCAGTGCCTTGTGAGATCACTCTGATCTGATTGGGTACAACTGTCCTTACAT
CTCCAGAGGGAAGGGCACCTAGCCTGATTGGAGTGCCCTCTAGTGGAGAGGGCTGTGTACTTAC
TTGGAGCTTGTCAGAAACTGCAGCCTAGCAGGTAGATAAGTGAAAGGGTTTGAAGCAGGTAGGG
TGCCAGAAGGACTCCAAGTAGATAGATGTATATTTCATGTACGGCCACTTGAAGGAATGCTAAA
TCTAAGGACCAAGTAAACAGTAGGTGTTACAGGTTTCGTTTCAGGCTTTTTCTCAAAAGCCAGC
TTGCCCTGTTGAGTTTAAATAGCTTTGATTGGCAATATTTTCACCCCTTGCTTTCAGAACATGT
CAGCTGAATAAAGTTGAGGTTTATTTAGAAAACCTTAAA

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Protein Sequences


Protein RefSeqs	NP_113873	(Get FASTA)	NCBI Sequence Viewer
	XP_017453009	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB82652	(Get FASTA)	NCBI Sequence Viewer
	AAC53131	(Get FASTA)	NCBI Sequence Viewer
	AAH61994	(Get FASTA)	NCBI Sequence Viewer
	EDM06279	(Get FASTA)	NCBI Sequence Viewer
	EDM06280	(Get FASTA)	NCBI Sequence Viewer
	EDM06281	(Get FASTA)	NCBI Sequence Viewer
	EDM06282	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005046
	ENSRNOP00000084049
	ENSRNOP00000084049.1
GenBank Protein	O35165	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_113873 ⟸ NM_031685
- UniProtKB:	O08566 (UniProtKB/Swiss-Prot), Q6GSW2 (UniProtKB/Swiss-Prot), O35165 (UniProtKB/Swiss-Prot), A6HJS5 (UniProtKB/TrEMBL), A0A8L2Q181 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEPLYQQTHKQVHEIQSHMGRLETADKQSVHLVENEIQASIDQIFSHLERLEILSSKEPPNRRQ NAKLRVDQLKYDVQHLQTALRNFQHRRQAKEQQERQRDELLSRTFTTNDSDTTIPMDESLQFNS SLQNIHHGMDDLIGGGHSILEGLRAQRLTLKGTQKKILDIANMLGLSNTVMRLIEKRAFQDKYF MIGGMLLTCAVMFLVVQYLT hide sequence

RefSeq Acc Id:	XP_017453009 ⟸ XM_017597520
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AG32 (UniProtKB/TrEMBL), A6HJS4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEPLYQQTHKQVHEIQSHMGRLETADKQSVHLVENEIQASIDQIFSHLERLEILSSKEPPNRRQ NAKLRVDQLKYDVQHLQTALRNFQHRRQAKEQQERQRDELLSRTFTTNGTQKKILDIANMLGLS NTVMRLIEKRAFQDKYFMIGGMLLTCAVMFLVVQYLT hide sequence

Ensembl Acc Id:

ENSRNOP00000005046 ⟸ ENSRNOT00000005046

Ensembl Acc Id:

ENSRNOP00000084049 ⟸ ENSRNOT00000114651

Ensembl Acc Id:

ENSRNOP00000087188 ⟸ ENSRNOT00000103024

Ensembl Acc Id:

ENSRNOP00000081754 ⟸ ENSRNOT00000106961

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O35165-F1-model_v2	AlphaFold	O35165	1-212	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697815

Promoter ID:

EPDNEW_R8339

Type:

multiple initiation site

Name:

Gosr2_1

Description:

golgi SNAP receptor complex member 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	91,756,104 - 91,756,164	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:62079	AgrOrtholog
BioCyc Gene	G2FUF-23031	BioCyc
Ensembl Genes	ENSRNOG00000003506	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000005046	ENTREZGENE
	ENSRNOT00000114651	ENTREZGENE
	ENSRNOT00000114651.1	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.58.400	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5599557	IMAGE-MGC_LOAD
InterPro	GOSR2/Membrin/Bos1	UniProtKB/Swiss-Prot
	v-SNARE_N_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:64154	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72394	IMAGE-MGC_LOAD
NCBI Gene	64154	ENTREZGENE
PANTHER	GOLGI SNAP RECEPTOR COMPLEX MEMBER 2	UniProtKB/Swiss-Prot
	VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED	UniProtKB/Swiss-Prot
Pfam	V-SNARE_C	UniProtKB/Swiss-Prot
PhenoGen	Gosr2	PhenoGen
PIRSF	Membrin-2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003506	RatGTEx
Superfamily-SCOP	SNARE fusion complex	UniProtKB/Swiss-Prot
TIGR	TC229934
UniProt	A0A8I6AG32	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2Q181	ENTREZGENE, UniProtKB/TrEMBL
	A6HJS4	ENTREZGENE, UniProtKB/TrEMBL
	A6HJS5	ENTREZGENE, UniProtKB/TrEMBL
	A6HJS6_RAT	UniProtKB/TrEMBL
	GOSR2_RAT	UniProtKB/Swiss-Prot
	O08566	ENTREZGENE
	O35165	ENTREZGENE
	Q6GSW2	ENTREZGENE
UniProt Secondary	O08566	UniProtKB/Swiss-Prot
	Q6GSW2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Gosr2	golgi SNAP receptor complex member 2			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)