Apom (apolipoprotein M) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Apom (apolipoprotein M) Rattus norvegicus
Analyze
Symbol: Apom
Name: apolipoprotein M
RGD ID: 620773
Description: Predicted to enable antioxidant activity; lipid transporter activity; and phospholipid binding activity. Involved in response to glucose. Located in extracellular space. Human ortholog(s) of this gene implicated in coronary artery disease; type 1 diabetes mellitus; and type 2 diabetes mellitus. Orthologous to human APOM (apolipoprotein M); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: apo-M; protein Px
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,695,618 - 3,698,218 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl203,692,737 - 3,698,218 (+)EnsemblGRCr8
mRatBN7.2203,690,950 - 3,693,550 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,688,413 - 3,693,550 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx204,390,260 - 4,392,730 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,752,317 - 3,754,787 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,290,095 - 4,292,565 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,120,473 - 5,123,073 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,120,474 - 5,123,073 (-)Ensemblrn6Rnor6.0
Rnor_5.0207,193,732 - 7,196,332 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4203,754,604 - 3,757,204 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera204,332,092 - 4,334,693 (-)NCBICelera
RGSC_v3.1203,754,853 - 3,757,431 (+)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,6-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aconitine  (EXP)
amitrole  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (EXP)
calcium atom  (EXP)
calcium(0)  (EXP)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
ciglitazone  (ISO)
clofibrate  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
corosolic acid  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
Dibutyl phosphate  (ISO)
dimethyl sulfoxide  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
drometrizole  (ISO)
flutamide  (EXP)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
GW 4064  (ISO)
hydrogen peroxide  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
inulin  (ISO)
L-ascorbic acid  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nefazodone  (EXP)
nitrofen  (EXP)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
silicon dioxide  (ISO)
simvastatin  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
Tanshinone I  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
ursodeoxycholic acid  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Plasma apolipoprotein M is reduced in metabolic syndrome but does not predict intima media thickness. Dullaart RP, etal., Clin Chim Acta. 2009 Aug;406(1-2):129-33. Epub 2009 Jun 17.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. A prospective evaluation of apolipoprotein M gene T-778C polymorphism in relation to coronary artery disease in Han Chinese. Jiao GQ, etal., Clin Biochem. 2007 Oct;40(15):1108-12. Epub 2007 Jul 4.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. Single nucleotide polymorphisms in the proximal promoter region of apolipoprotein M gene (apoM) confer the susceptibility to development of type 2 diabetes in Han Chinese. Niu N, etal., Diabetes Metab Res Rev. 2007 Jan;23(1):21-5.
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Apolipoprotein M promoter polymorphisms alter promoter activity and confer the susceptibility to the development of type 1 diabetes. Wu X, etal., Clin Biochem. 2009 Jan;42(1-2):17-21. Epub 2008 Oct 30.
11. Suppression of apolipoprotein M expression and secretion in alloxan-diabetic mouse: Partial reversal by insulin. Xu N, etal., Biochem Biophys Res Commun. 2006 Apr 21;342(4):1174-7. Epub 2006 Feb 14.
12. Hyperglycemia down-regulates apolipoprotein M expression in vivo and in vitro. Zhang X, etal., Biochim Biophys Acta. 2007 Jul;1771(7):879-82. Epub 2007 May 18.
13. Expression pattern of apolipoprotein M during mouse and human embryogenesis. Zhang XY, etal., Acta Histochem 2004;106(2):123-8.
Additional References at PubMed
PMID:2297521   PMID:12477932   PMID:15060004   PMID:15793583   PMID:16682745   PMID:17154273   PMID:18006500   PMID:22204862   PMID:23376485   PMID:23953565   PMID:26377577  


Genomics

Comparative Map Data
Apom
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,695,618 - 3,698,218 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl203,692,737 - 3,698,218 (+)EnsemblGRCr8
mRatBN7.2203,690,950 - 3,693,550 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,688,413 - 3,693,550 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx204,390,260 - 4,392,730 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,752,317 - 3,754,787 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,290,095 - 4,292,565 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,120,473 - 5,123,073 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,120,474 - 5,123,073 (-)Ensemblrn6Rnor6.0
Rnor_5.0207,193,732 - 7,196,332 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4203,754,604 - 3,757,204 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera204,332,092 - 4,334,693 (-)NCBICelera
RGSC_v3.1203,754,853 - 3,757,431 (+)NCBI
Cytogenetic Map20p12NCBI
APOM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,652,404 - 31,658,210 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,652,416 - 31,658,210 (+)Ensemblhg38GRCh38
GRCh37631,620,181 - 31,625,987 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,731,650 - 31,733,966 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34631,731,649 - 31,733,965NCBI
Celera633,221,892 - 33,224,208 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,406,412 - 31,412,212 (+)NCBIHuRef
CHM1_1631,622,323 - 31,628,123 (+)NCBICHM1_1
T2T-CHM13v2.0631,505,437 - 31,511,243 (+)NCBIT2T-CHM13v2.0
Apom
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,347,973 - 35,350,777 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,347,973 - 35,351,026 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381735,128,997 - 35,131,801 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,128,997 - 35,132,050 (-)Ensemblmm10GRCm38
MGSCv371735,265,942 - 35,268,697 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361734,737,053 - 34,739,808 (-)NCBIMGSCv36mm8
Celera1738,225,932 - 38,228,688 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
Apom
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437190,609 - 197,342 (+)Ensembl
ChiLan1.0NW_004955437190,609 - 192,781 (+)NCBIChiLan1.0ChiLan1.0
APOM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,129,400 - 46,135,238 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,090,938 - 42,096,756 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,313,543 - 31,319,374 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,203,435 - 32,209,249 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,206,514 - 32,209,249 (+)EnsemblpanPan2panpan1.1
APOM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,137,474 - 1,142,337 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,140,316 - 1,142,331 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha121,273,598 - 1,278,509 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0121,282,390 - 1,287,302 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,285,280 - 1,287,296 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,142,107 - 1,146,651 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,209,008 - 1,213,915 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,276,069 - 1,280,982 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Apom
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,687,172 - 35,692,577 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,865,921 - 1,872,214 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,868,751 - 1,874,347 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,768,984 - 23,773,324 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1723,768,974 - 23,773,324 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,478,637 - 27,481,118 (-)NCBISscrofa10.2Sscrofa10.2susScr3
APOM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604431,563,816 - 31,569,058 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Apom
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,554,705 - 24,557,098 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475424,554,705 - 24,558,093 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Apom
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1187,728,037 - 7,731,549 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Apom
37 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:48
Count of miRNA genes:47
Interacting mature miRNAs:48
Transcripts:ENSRNOT00000001126
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
RH142043  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,693,748 - 3,693,954 (-)MAPPERmRatBN7.2
Rnor_6.0205,120,069 - 5,120,274NCBIRnor6.0
Rnor_5.0207,193,328 - 7,193,533UniSTSRnor5.0
RGSC_v3.4203,757,403 - 3,757,608UniSTSRGSC3.4
Celera204,331,688 - 4,331,893UniSTS
RH 3.4 Map2051.3UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 160 91 90 59 88 59 6 351 187 11 139 81 91 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001126   ⟹   ENSRNOP00000001126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl203,692,737 - 3,698,218 (+)Ensembl
mRatBN7.2 Ensembl203,688,413 - 3,693,550 (+)Ensembl
Rnor_6.0 Ensembl205,120,474 - 5,123,073 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,122,232 - 5,123,057 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096939   ⟹   ENSRNOP00000077771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,690,950 - 3,692,938 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120461   ⟹   ENSRNOP00000098125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl203,693,134 - 3,697,503 (+)Ensembl
RefSeq Acc Id: NM_019373   ⟹   NP_062246
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,695,618 - 3,698,218 (+)NCBI
mRatBN7.2203,690,950 - 3,693,550 (+)NCBI
Rnor_6.0205,120,473 - 5,123,073 (-)NCBI
Rnor_5.0207,193,732 - 7,196,332 (-)NCBI
RGSC_v3.4203,754,604 - 3,757,204 (+)RGD
Celera204,332,092 - 4,334,693 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_062246 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF23408 (Get FASTA)   NCBI Sequence Viewer  
  AAH89807 (Get FASTA)   NCBI Sequence Viewer  
  CAE83996 (Get FASTA)   NCBI Sequence Viewer  
  EDL83529 (Get FASTA)   NCBI Sequence Viewer  
  P14630 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_062246   ⟸   NM_019373
- Peptide Label: precursor
- UniProtKB: Q5EBB9 (UniProtKB/Swiss-Prot),   Q9QXI9 (UniProtKB/Swiss-Prot),   P14630 (UniProtKB/Swiss-Prot),   A6KTU9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001126   ⟸   ENSRNOT00000001126
Ensembl Acc Id: ENSRNOP00000077771   ⟸   ENSRNOT00000096939
Ensembl Acc Id: ENSRNOP00000098125   ⟸   ENSRNOT00000120461

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P14630-F1-model_v2 AlphaFold P14630 1-190 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701396
Promoter ID:EPDNEW_R11919
Type:initiation region
Name:Apom_1
Description:apolipoprotein M
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,123,073 - 5,123,133EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620773 AgrOrtholog
BioCyc Gene G2FUF-4649 BioCyc
Ensembl Genes ENSRNOG00000000850 Ensembl
Gene3D-CATH 2.40.128.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7323885 IMAGE-MGC_LOAD
InterPro ApoM UniProtKB/Swiss-Prot
  Calycin UniProtKB/Swiss-Prot
KEGG Report rno:55939 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108710 IMAGE-MGC_LOAD
NCBI Gene 55939 ENTREZGENE
PANTHER APOLIPOPROTEIN M UniProtKB/Swiss-Prot
  PTHR32028 UniProtKB/Swiss-Prot
Pfam ApoM UniProtKB/Swiss-Prot
PhenoGen Apom PhenoGen
RatGTEx ENSRNOG00000000850 RatGTEx
Superfamily-SCOP SSF50814 UniProtKB/Swiss-Prot
UniProt A0A8L2PZB3_RAT UniProtKB/TrEMBL
  A0ABK0KVZ4_RAT UniProtKB/TrEMBL
  A6KTU9 ENTREZGENE, UniProtKB/TrEMBL
  APOM_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5EBB9 ENTREZGENE
  Q9QXI9 ENTREZGENE
UniProt Secondary Q5EBB9 UniProtKB/Swiss-Prot
  Q9QXI9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Apom  apolipoprotein M      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Apom  apolipoprotein M      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_mapping found within the rat major histocompatibility RT1 complex 1300431