Advanced Search (OLGA)

Gene: Ptpn4 (protein tyrosine phosphatase, non-receptor type 4) Rattus norvegicus

Analyze

Symbol:

Ptpn4

Name:

protein tyrosine phosphatase, non-receptor type 4

RGD ID:

620712

Description:

Predicted to enable glutamate receptor binding activity and non-membrane spanning protein tyrosine phosphatase activity. Predicted to be located in membrane. Predicted to be active in cytoplasm and cytoplasmic side of plasma membrane. Orthologous to human PTPN4 (protein tyrosine phosphatase non-receptor type 4); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC360836; tyrosine-protein phosphatase non-receptor type 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	33,324,808 - 33,504,957 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	33,324,808 - 33,504,957 (-)	Ensembl				GRCr8
mRatBN7.2	13	30,772,012 - 30,952,340 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	30,776,682 - 30,952,170 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	33,353,328 - 33,533,288 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	34,641,168 - 34,821,122 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	31,915,258 - 32,095,209 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	35,678,240 - 35,858,414 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	35,678,240 - 35,858,390 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	40,792,728 - 40,972,784 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	32,430,875 - 32,611,163 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	30,666,333 - 30,846,454 (-)	NCBI		Celera
RGSC_v3.1	13	32,475,262 - 32,484,043 (-)	NCBI
Cytogenetic Map	13	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

crocin-1 (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

ethanol (ISO)

flutamide (EXP)

maneb (ISO)

methidathion (ISO)

methylmercury chloride (ISO)

oxybenzone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

raloxifene (ISO)

silicon dioxide (ISO)

tamoxifen (ISO)

testosterone enanthate (ISO)

tetrachloromethane (EXP)

thimerosal (ISO)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

peptidyl-tyrosine phosphorylation (ISO)

Cellular Component

cytoplasm (IBA,IEA,ISO)

cytoplasmic side of plasma membrane (IBA,IEA,ISO)

cytoskeleton (IEA)

membrane (IEA,ISO)

plasma membrane (IEA)

Molecular Function

cytoskeletal protein binding (IEA)

glutamate receptor binding (IEA,ISO)

hydrolase activity (IEA)

non-membrane spanning protein tyrosine phosphatase activity (IEA,ISO)

phosphoprotein phosphatase activity (IEA)

protein binding (ISO)

protein tyrosine phosphatase activity (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	The properties of the protein tyrosine phosphatase PTPMEG.	Gu M and Majerus PW, J Biol Chem 1996 Nov 1;271(44):27751-9.
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	Councils of Nursing Assistants (N.A.C's)	Paradis R Infirm Aux 1992 Dec;65(2):1-3.
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10940933	PMID:11054567	PMID:12218363	PMID:31178952

Genomics

Comparative Map Data

Ptpn4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	33,324,808 - 33,504,957 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	33,324,808 - 33,504,957 (-)	Ensembl				GRCr8
mRatBN7.2	13	30,772,012 - 30,952,340 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	30,776,682 - 30,952,170 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	33,353,328 - 33,533,288 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	34,641,168 - 34,821,122 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	31,915,258 - 32,095,209 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	35,678,240 - 35,858,414 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	35,678,240 - 35,858,390 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	40,792,728 - 40,972,784 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	32,430,875 - 32,611,163 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	30,666,333 - 30,846,454 (-)	NCBI		Celera
RGSC_v3.1	13	32,475,262 - 32,484,043 (-)	NCBI
Cytogenetic Map	13	q11	NCBI

PTPN4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	119,759,922 - 119,984,899 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	119,759,604 - 119,984,899 (+)	Ensembl			hg38	GRCh38
GRCh37	2	120,517,498 - 120,742,475 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	120,233,677 - 120,451,507 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	120,233,436 - 120,451,267	NCBI
Celera	2	113,842,942 - 114,061,903 (+)	NCBI		Celera
Cytogenetic Map	2	q14.2	NCBI
HuRef	2	112,841,586 - 113,066,878 (+)	NCBI		HuRef
CHM1_1	2	120,520,785 - 120,746,914 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	120,193,967 - 120,419,641 (+)	NCBI		T2T-CHM13v2.0

Ptpn4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	119,580,197 - 119,765,281 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	119,580,197 - 119,765,343 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	119,652,467 - 119,837,585 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	119,652,467 - 119,837,613 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	121,554,669 - 121,733,648 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	121,487,291 - 121,630,021 (-)	NCBI		MGSCv36	mm8
Celera	1	122,316,986 - 122,496,376 (-)	NCBI		Celera
Cytogenetic Map	1	E2.3	NCBI
cM Map	1	52.39	NCBI

Ptpn4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955459	9,803,421 - 9,981,392 (-)	Ensembl
ChiLan1.0	NW_004955459	9,803,421 - 9,981,392 (-)	NCBI	ChiLan1.0	ChiLan1.0

PTPN4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	21,735,494 - 21,982,547 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	21,750,466 - 21,998,093 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	6,694,192 - 6,917,265 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	120,320,591 - 120,492,423 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	120,320,610 - 120,485,676 (+)	Ensembl			panPan2	panpan1.1

PTPN4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	30,079,221 - 30,285,126 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	30,086,832 - 30,241,064 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	30,335,314 - 30,541,476 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	31,454,630 - 31,662,707 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	31,461,882 - 31,663,169 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	30,140,713 - 30,349,797 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	30,310,819 - 30,517,448 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	31,493,639 - 31,702,636 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ptpn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	90,976,332 - 91,149,472 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	50,470,256 - 50,594,357 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	50,463,473 - 50,641,419 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PTPN4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	31,307,447 - 31,502,923 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	31,305,394 - 31,502,978 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	36,235,035 - 36,459,764 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PTPN4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	10,325,263 - 10,554,381 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	10,328,766 - 10,554,258 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666061	12,136,097 - 12,365,467 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ptpn4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	25,108,192 - 25,278,948 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624732	25,099,327 - 25,301,610 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ptpn4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	12,234,802 - 12,409,913 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ptpn4
1931 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	919
Count of miRNA genes:	335
Interacting mature miRNAs:	447
Transcripts:	ENSRNOT00000003568
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2317027	Aia22	Adjuvant induced arthritis QTL 22	2.29		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	13	1	34785618	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
2317034	Aia9	Adjuvant induced arthritis QTL 9	4.62		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12285517	34884386	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	12448421	47969993	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2303030	Bp327	Blood pressure QTL 327			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	43736554	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
2317044	Aia23	Adjuvant induced arthritis QTL 23	2.3		joint integrity trait (VT:0010548)	ankle joint diameter (CMO:0002148)	13	12285517	34884386	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	6002008	47359539	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879471	Bp398	Blood pressure QTL 398			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	3088755	48088755	Rat
631672	Iddm12	Insulin dependent diabetes mellitus QTL 12	2.2	0.0032	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	6002008	37088115	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
738036	Lnnr4	Liver neoplastic nodule remodeling QTL 4	3.64		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	1	34785618	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Markers in Region

D13Mco4

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	13	33,360,563 - 33,360,797 (+)	Marker Load Pipeline
mRatBN7.2	13	30,807,767 - 30,808,001 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	35,713,956 - 35,714,189	NCBI	Rnor6.0
Rnor_5.0	13	40,828,673 - 40,828,906	UniSTS	Rnor5.0
RGSC_v3.4	13	32,466,682 - 32,466,916	RGD	RGSC3.4
RGSC_v3.4	13	32,466,683 - 32,466,916	UniSTS	RGSC3.4
Celera	13	30,702,088 - 30,702,321	UniSTS
RGSC_v3.1	13	32,469,506 - 32,469,740	RGD
Cytogenetic Map	13	q11	UniSTS

BE199656

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	30,772,177 - 30,772,293 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	35,678,406 - 35,678,521	NCBI	Rnor6.0
Rnor_5.0	13	40,792,894 - 40,793,009	UniSTS	Rnor5.0
RGSC_v3.4	13	32,431,041 - 32,431,156	UniSTS	RGSC3.4
Celera	13	30,666,499 - 30,666,614	UniSTS
Cytogenetic Map	13	q11	UniSTS

RH131441

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	30,772,557 - 30,772,749 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	35,678,799 - 35,678,990	NCBI	Rnor6.0
Rnor_5.0	13	40,793,287 - 40,793,478	UniSTS	Rnor5.0
RGSC_v3.4	13	32,431,421 - 32,431,612	UniSTS	RGSC3.4
Celera	13	30,666,879 - 30,667,070	UniSTS
Cytogenetic Map	13	q11	UniSTS

RH143699

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	30,951,974 - 30,952,114 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	35,858,195 - 35,858,334	NCBI	Rnor6.0
Rnor_5.0	13	40,972,589 - 40,972,728	UniSTS	Rnor5.0
RGSC_v3.4	13	32,610,968 - 32,611,107	UniSTS	RGSC3.4
Celera	13	30,846,259 - 30,846,398	UniSTS
Cytogenetic Map	13	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	167	91	90	59	92	59	6	358	192	11	147	83	92	31	19	19

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF502572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003568 ⟹ ENSRNOP00000003568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	33,324,808 - 33,504,957 (-)	Ensembl
mRatBN7.2 Ensembl	13	30,776,682 - 30,952,170 (-)	Ensembl
Rnor_6.0 Ensembl	13	35,678,240 - 35,858,390 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095537 ⟹ ENSRNOP00000088009

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	33,324,808 - 33,504,957 (-)	Ensembl
mRatBN7.2 Ensembl	13	30,776,682 - 30,952,170 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107559 ⟹ ENSRNOP00000076958

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	33,435,637 - 33,504,957 (-)	Ensembl
mRatBN7.2 Ensembl	13	30,882,844 - 30,952,170 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108019 ⟹ ENSRNOP00000079705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	33,363,154 - 33,504,957 (-)	Ensembl
mRatBN7.2 Ensembl	13	30,810,358 - 30,952,170 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000126127 ⟹ ENSRNOP00000111677

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	33,324,808 - 33,504,689 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128477 ⟹ ENSRNOP00000110591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	33,324,808 - 33,504,957 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000160454 ⟹ ENSRNOP00000100519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	33,338,973 - 33,504,957 (-)	Ensembl

RefSeq Acc Id:

NM_001100479 ⟹ NP_001093949

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	33,324,808 - 33,504,957 (-)	NCBI
mRatBN7.2	13	30,772,012 - 30,952,170 (-)	NCBI
Rnor_6.0	13	35,678,240 - 35,858,390 (-)	NCBI
Rnor_5.0	13	40,792,728 - 40,972,784 (-)	NCBI
RGSC_v3.4	13	32,430,875 - 32,611,163 (-)	RGD
Celera	13	30,666,333 - 30,846,454 (-)	RGD

Sequence:

show sequence

AGCCGCCTCCCTGGAGTCACCCGCCGCCTCTCGCCGCGCGCGCTTCCCTGCTCCGCGGACGCGA
CATTGTTCTTGAAGACTCCCGGGACCTGTCAGAAATCGGGGCTCCGGGACTTGAAAGAGACTTG
ACTTCGGCTCGCGGGTTGCGGGGACCGCGGTACTTTCGGGGCGCGTGTGAGGGGATTAGCTCAT
CTCGCCGCGAGGTGCGAGCGCGTGCCTCCCCGCGCACGCTGGCCCCGCCGCAGCCCCGCAGGAT
GACGGGGTGCAGGCGGCCCGCGGCCGTGGCGCGGCCGCTGTGGCGGCGGCTGTTCGCGGGGCGC
TGAGGGCGAGCACCCGGACGCGGACCACGCGCCCCTTTCCCCCGGCCACGAGCCCGGGGCCTCC
TGGCTTTTTGTATTTGGATTTTGTTTTTCTTTCCCCAGCCGAGAGGACGCGGCTGTGACAACGA
AGGTTTTGTGCGGACAGTAATGACCGCACGTTTCCGATTGCCTGCTGGCAGAACCTACAATGTC
CGAGCATCAGAGTTGGCCCGAGACAGACAGCATACAGAGGTGGTTTGCAACATTCTTCTTCTGG
ATAACACTGTACAGGCATTCAGAGTTAATAAACATGATCAGGGGCAAGTTCTGTTGGATATAGT
CTTCAAGCATCTTGATCTGACTGAGCGAGACTATTTTGGTTTACAGTTGGCTGATGATTCCACA
GATAACCCAAGGTGGCTGGATCCAAACAAACCAATAAGGAAGCAGCTAAAGAGAGGATCACCTT
ACAATTTGAACTTTAGAGTCAAATTCTTTGTAAGTGACCCCAACAAGTTACAAGAAGAATATAC
AAGGTATCAGTATTTTTTGCAAATTAAGCAAGACATTCTTACTGGAAGATTATCCTGTCCTTGT
AACACTGCTGCTCTTTTAGCTTCATTCGCTGTTCAGTCTGAACTTGGAGACTACAATCAGTCAG
AAAACTTGGCAGGCTACCTCTCAGATTATTCTTTCATTCCTAATCAACCTCAAGATTTCGAGAA
AGAAATTGCAAAGTTACATCAGCAGCATATTGGCTTATCTCCTGCAGAAGCAGAATTTAATTAC
CTAAACACAGCACGTACCCTGGAACTCTATGGAGTTGAATTTCACTATGCAAGGGATCAAAGTA
ACAATGAAATCCTGATTGGAGTGATGTCAGGAGGAATTCTGATTTACAAGAACAGGGTACGGAT
GAATACTTTTCTGTGGTTGAAGATTGTAAAAATTTCTTTTAAATGCAAACAATTTTTTATTCAA
CTTCGAAAAGAATTGCATGAATCTAGAGAAACATTACTTGGATTTAATATGGTGAATTATAGAG
CGTGTAAAACTTTGTGGAAAGCGTGTGTAGAACATCACACATTCTTCCGCCTGGATAGACCACT
TCCACCTCAAAAGAACTTTTTTGCACATTATTTTACATTGGGTTCCAAATTCCGGTACTGTGGG
AGAACTGAAGTCCAGTCAGTTCAGTATGGCAAAGAAAAGGCAAATAAAGACAGGGTATTTGCAA
GATCTCCAAGTAAGCCTTTGGCCCGGAAATTAATGGATTGGGAAGTAGTCAGCAGAAATTCGTT
ATCTGATGACAGGTTAGAAACACAAAGTCTCCCATCCCGGTCTCCACCTGGAACTCCCAACCAT
CGAAATTCTTCATTCACACAAGAGGGGACCCGGGTTCGGCCGTCTTCAGTTGGTCATTTGGTAG
ACCATGTGGTTCATACATCCCCCAGTGAGGATTTTGTAAGTCAGAGATCTCCATCATCAACGCA
AGCTAATAGCATAGTTCTGGAATCATCACCATCACAAGAGACCCCTGAAGATGGGCAGCCTCCA
GCTTTACCACCCAAACAATCTAAGAAAAACAGTTGGAACCAAATTCATTTTTCACATTCTCAGC
AAGATCTAGTCAACCATACTAATGAATCCTTTGATGTGCCCTCTTCCCCTGAAAAGTCCACTCC
TAATGGTGGCATTCCACATGATAACCTTGTTCTAATCAAAATGAAACCTGATGAGAATGGAAGG
TTTGGATTCAATGTAAAGGGAGGGTATGATCAGAAGATGCCTGTAATTGTGTCCCGGGTAGCAC
CAGGAACACCTGCTGACCTCTGTGTCCCTCGGTTGAATGAAGGGGACCAAGTGGTACTCATAAA
TGGCCGGGATATTGCAGAACACACCCATGATCAAGTAGTCTTATTTATTAAAGCTAGCTGTGAG
AGACATTCTGGGGAACTTGTGCTCCTAGTTCGACCTAATGCTGTATATGACGTAGTGGAAGAAA
AACTAGAAAGTGAGCCAGACTTCCAGTATATTCCTGAAAAAGCCCCTCTAGATAGTGTCCATCA
AGATGACCATTCCCTGCGGGAGTCGATGATCCAGCTAGCTGAGGGGCTTATCACTGGAACAGTA
CTGGCACAGTTTGATCAACTGTATCGGAAAAAACCTGGAATGACAATGTCTTGTGCCAAATTAC
CTCAGAACATTTCCAAAAACAGATACAGAGATATTTCACCTTATGACGCTACACGGGTCCTTTT
AAAAGGTAATGAAGACTACATCAATGCAAACTATATAAATATGGAAATTTCTTCTTCGAGTATT
ATAAATCAATACATTGCTTGTCAAGGGCCATTACCACATACTTGTAAAGATTTTTGGCAAATGA
CTTGGGAACAAGGCTCCTCCATGGTTGTGATGTTGACCACACAAGTTGAACGTGGCAGAGTTAA
ATGTCACCAGTATTGGCCAGAACCCTCAGGAAGCTCATCCTATGGATGCTATCAAGTCACCTGC
CACTCTGAAGAAGGAAATCCTGCGTATATCTTCAGGAAAATGACACTGTTTAACCAAGAGAAAA
ATGAGAGTCGCCAACTCACTCAGATTCAGTACACAGCCTGGCCTGACCATGGGGTACCTGACGA
CTCAAGTGACTTTCTGGATTTCGTTTGTCATGTCCGAAACAAGAGGGCTGGAAAAGAAGAGCCG
ATTATTGTTCATTGCAGTGCTGGAATAGGAAGGACTGGGGTTCTCATCACTATGGAAACTGCTA
TGTGTCTCATTGAATGCAATCAGCCAGTGTATCCACTAGACATTGTAAGAACAATGAGAGATCA
AAGAGCCATGATGATCCAAACCCCTAGTCAATACAGATTTGTATGTGAAGCTATTTTGAAAGTT
TATGAAGAAGGCTTTGTTAAACCATTAACAACATCATCAAATAAATAAGAAAGCAAAAAGGTTG
GAATAAGTACTGGGAACCTGAGTTTGTTACATTCACTGTGCCATAATACTGCTTGCAGGAAATG
GCCTCTCACACAAAAAGTGAAGAACTCAAAGAGACCTCGAGAACTTCAGCACTACTGCACTTTA
TGTTTCAAAAAGTCACTCAGAACTTACCACATGTTTGAATACTTTGTGCTTTGCTCTGAACAAA
TAGTGGAAACTGGGTATGTTCAGAGTAATTTATGGAATTGTGAGGCATTGCCATGCAGTCCCTT
CTGGTAGAATTGCCGCCGACAAGGCTCAGATTCTCATCTCTGTCACACACCTGTACCTTGAAAG
CAGAAGGAGTTATCATCAGGAGTCTGCTCTGGATTTTCCCAGGGGTCATGCCCTCACTCTACTG
ATTACCAGATTTTATTTTTCAAACGTTAGCAATACCATTCTCAACATTAGCCAGTACACTGCCT
GTGGGTGCAGCACATCTTCCTAACGTCCCCGTGGGGACCTGCTGTTGAGAAGAAAATTGGAACT
TGCTGTTCCCAGGAAATGCTGCACAGTGTCCATTTACCAGCATCTTATAGAAATAACTATGAAT
TTTCTTGGATTTAATAATGTAACTTATATTTATCATAAGGTTGGCTTATTCCAAATCATGTGAT
TTCACAGTCTTGATGTAAAGGAATGCATGCATCGTGTCTTAACCCCTTAAGTGCCTTGAGATAT
CTTTGTCTAATGAAAAGGCACTCATTTGACCCCATAGGAGGTATGTATGTATACTGTACATTCT
TATAGTTTTACGAATTTTTAATGAGATCACAGTGTTTTAAAAAGCTGTTTTAAAAACCAGCTTC
TTATGTTGAGAGTTATACAAACAGCAAAGGGTAAGGCCATTCTGTCTTTTACTCAGTGCTTGTA
CTTTGCCGTAAAAGCCAGGATATCTGTATTCTGCCCAGAGTGCATCTGCTGCTATGGAATTGTT
CACAATCTGCACATTCCTTTACCGAAGGGAAGGATAGGGGTTAAAGTTTAGCAGCTTAACTTAA
AAAGAGGGTTTATTCTTCAGATTTCACATTTACTTTATCCTAAGGTAAGAATTGATGTTTAATA
TGTGCATCAAAGATAAATATATTGGTATTCTAGGTTACAGTGAGAAAGTCGATCAGCTGGGTTA
TGCACCCGTAACTGACGAGCTGCCCTGGAGCATCATCACTCCAAGGCCTGTCAGGCTGGCTCAC
ACTGCTCCTTCCTTCCACTGGGGTTCTTCACACAAGGAGTTAAACACTTTAGCATTCTCTAAAG
TGACCCTTCCTTGTCATCCAGTTTATATATGCCTGTTAAATTATAAGCATGTCAGTAAGTAGGC
CATCTTAACGGAAGATCCAACTCCCATTACAGATATGTCTGTTTTCCTTGTTTTAAGTCTGTGG
AGACAGATTTTTAAAATTGCACAATTTAATGTGAGAACTTGCTCACCTATTCACATGTTATTTT
ATAAGGATATGGTTAAAATAGACACATTTACTAGTGGTTTTCAGATTACTTCTGTAGTCTCGAT
AAAACATAGGTCCCAATGGTAGATATTTTGGAATGCTATTTAGTTGAGGGAATGATACACATTT
AAAAAATCTTTAGTAACATATAAATTATTGCTTCAGGTATTCAGAACCCATAATAGTAAAATTC
AAAAGTTAAGCTTCTAAATATTAATTGCCAGGGTACCAAATAAATTGGCACTTATAAATACTTC
TTGTCTTTTTTTTAAAGAAAGAAATAAACATCTTTACATCAAACAGAAGTCCCCTTATTATGAT
TTCACAAGCAAGACAATAATATAAGTTCGTAAGTGAACTATAATTATACTCAGACATTCCATTC
TGTAACCAGAGGCAAATGTAATTTAGGCTGGTAAGCTATCATTACAACTTAAAAAGGGGAAACA
AGCTAGAGATCTATGTTATAAAGCTATTTTATTTCATTGGTGGATTTTAGCCTAAATTTTATAT
CTTGCCATGTGGGTAGAAGGTGATAAGTGTAGACAGGAAGAGAAAAGCTGTGTAGAAAGGCAGT
GTCATGGTTCGTTTGCTCTTCAATGTAAAGCTTTGGGTACATCTCTGGTTAGCACTGATGTTGG
CAGCAGGCATTGCTGCCTTTTAAATCAGCAGTGCTTAATCTGAAATGACAAGTGTAGAATTAAA
TTCAAATTTATCATAGCAGTTTCTTATCTGAGAACTATGCTCCATTCGTGTTTTACATCTGAAG
ACAGCCCTTTTAGAACATTTATTAGGATCTTAAGCTAAACTTAGCCTTCACAAATTGTTAATAT
AGATATGCTAACTAAACTTTCCTAGTTACCTAACAGAACACTTGTCTTTTCCACCTAAGCATCT
AACCAGTTTATGAATCTAAATAGGTTACTAGAAATAATGCTAGTTTTCATATGCCAAGTACTGC
TCCACTCCATAGATATTGATATAATATTGTGTGACAAAAACCAAATTTCTTGAACCAAACTACT
TTTCCATTACTACTTAGCCACCCTTAAGCTCACACCCCAACAAACTCAAGAACAAATCAATGCA
TTTCTTCGGACAAGGAGAAGTTAGTATTGGTGAGTTAGGGCTTCTGTACATGCTAAGAGTAAAC
ATGACTTTTCTGCTTCTTTCATAGGGCATTTAGTTTTGTCAGCACTAGATGCTCTGTAGTAATC
TTTTGGAGTAGACTTTGCATTCACAAAAAGAATAGGTTGTATTTGTTAAACTAATCCATTCATT
CAAAAGTGAGACAGAATAAACAGCCCAAGAACAGTTTTTGTATAGCTTGCTGGGACAAGTAATT
GGGAAAGGGCAATGATTGATCATTTTGACTTCAGAATAAAGGTAACATTGTATAAAAAATGACT
TCACAAGCAGTTATGCTGAGCCATTAGGACAGATGCTTGAAAATTTGGGGTACTACTGTAGCTG
CCTTCAAAGAGAAACATCAGTGTGTTGGTTTGCATGTGTACTTACTTCATAAAGACATGTTCAC
AGATTGAAAGGACTTTTAACCATGGGGTTGTTTATATCTCTTGGCAGACCAAGTCTAATGAGTT
ATTTGAAAAAAAAAAAATCTCCATGTCACTAGAAGTAGTACTACACCTTGAGAGCTAAAAATTT
GAAAGATTTTATCCACTCTCTGTGTCCTTGTTATTATAGAAAGGACTACAGGCCCAACAATTAA
TTTAGCAGAATCTGCTCATCTTCAGGTTTTCTAATTCTCAATTTAGTGTCTCTGTATTAGACTG
TAGCTTCAGTAAATTGTGACAAATGCTTGTAAGTTTTTCTACTTGGGAAGTATGCTCAGTGTTG
TCACTTAAACCTGTAACACCTTAGAAGTTGGAAAGGAGACTTCAAAAGTGATGCCAATGAGGAC
TTGGACTCAGTTTTCTGGTGCTTCCCAGACAGATTAGCATAAACTATTGTGAAGTATTTAGGCT
GATACACATGCAGTATAAAACTGAAATGCAAGTAGGAAAGCATTTTTAAAGCACTTAAAACGTG
GACCTGAGATTTAGATCTTATACCTACTTACAAAATAATATGTTCATGTGAACATGTGATAAAA
AGGAAATATAGCTTGTTTAGCAGGAAGAGAGAAGGAAACATGAACTTATAGCAATATGCTATTT
AATGTCTGTGTTTTGAATATTTAAAATATCTGATGGTAAAATTGCCAAAGTAGTTTGAATTCAT
GTAAGTTGTTTATACTACAACAATGTGGGATATGTTTACAGGCTCTTTATAGTGCTTACTTTGT
AGTTCTGATGAAGTTTGTAGTTTGTATTTAAGTCATTTATAGTAAATGTATGATAAATATTTGC
TGGAATAAATATCTCAGTAATATAGCAAAACGTATCTAAGTAATCCCACAGTCTGCTTTCATAC
AAGGTGCTTTGTCCAGAAAAGCAAGTACTTTGTGACACCATTGCTTACACCCCACATTTGCACC
AACTGTCCAACTACATTCCTGGAACCCTGTGTGGTGGGTGCTGCCTCCAAGTAAAACAGCTGTG
TTACTATAATTATATCAGAGTTACTAATCTATTAACAGATATTTGTGTCTCAGTGTGATCACAA
ATTGAGTGACTTTTATGAAATTCTTAGAAAATTATATACATGCAAAGAAATTTATTTAATCTTA
AAACTTTTTGAGGGCTAATTGCTAATAGATAATGTTATCAATTTTAAGAGTAAAAGAAATCAAT
CCCAGAATTATATGTTTTGAGTTCTGCTTTTTACCACAATTCTTATTTTGCATAGATTTCATTT
ACTCTTAGTAGTACTTATTATAATATATTTCTCTATGTTATCAGAAACAACAACCCATGTATTC
CGGCCCACAATTACTTGATTTTCATGCCTTATTGAATTCTTTTGAGTAGGTACCATAATGTTAT
TTTCTGTTTCCATCTATCAGTGTGACGCTGCTTATTTTACAGTTTTCTACTGTGGAACACTGTT
GATTTCTAAAGTCATTATTTATTTTTTTTTTAAGTCCTCCGAAGGTAAATGAGCAGCCATTAGT
TCTAGCTTTTTGGTGGCAGTCCATCTGTATTGGCTAGGTATGGTTCAGTGCATAAACAAGTACA
CCATTTTGCAGAAAGTTATTAGCAATATTTCAAGTTAAAAACTACACTGTTCAGGAAGAGTTCA
AACGTTTAACTTCCTGGAGCCTTGTAAATTTTCCAGTATAAGAATGAAAAAGAAAGCCTTGGTA
AGTTCATAAAAGTTTCAAATAAACACTGTAGAGTTTTCCTATTATGTAAATGATATACAGAAAA
TATTTTTCTATGAACAGAAGGTTAAAACTGTTAACTTTAATTTCATTGCTTAAAAGGGATAAAA
CAATATTTGTATGTCTTTCATGCTGTAAAGAAAATGAATGTATCTTTCAAATGTTAGAGTCATT
ACTTGATTGTAAGTATATGTGTTTTTAAAAATCTGTAAAGGGTTGAAAAGAAGAGTATTACAAG
TCATTATGTAAGACGCAATGTTGGAAGAAATGGAATTTCATTATAAATGAGCAGTCACTATCAA
AGCATATTTCAGTATAGTGCATATTCATTTTCACATTGCTTTGTTTTATCTCTAGAAATGTTTC
TTAAAAATTGTGTATACTGTTTTGGGTATACACTAATTGGTTTCTACACTTGTGTGTTAGGCTC
AGTGTGCTGCTGCATGTGTCTACCATGGGGAAAAGTTACCAAGTTTTGTCAATGTCGAAGCCAC
CAATGGGGGCATCATTGTTAGAATGTGAAACCCATGCCTAGGAGCCACTGCAGCAACTCTGTGC
AGAGGCCTCTGACTGTGCTAATGTGTTTCCCTTTTTATCTTCAATGACATGGATAGTAAGACTA
CTGGGCCCAACTCTCCTGACTTGTGGTGGTTTGTATGCTTACAACTTTATTCAGCTAGTGCCCG
TAGGTGTGAATGATTTGTTCATTAGCTCTTTAAATCTAGTATTTATCAGTTATTAAACTTGATG
AAAATTGGGAATTCATTGTTTTGACACTTTTCTAGCCATCCATACTAATTTTAACTCATCATGA
TGGACCCTGAACAACCAAAAAGTGATCCCTGGTTAGTGTCAGATTTCCTCTACCCCAGCATTTA
CAAGGTTGACTGATGACTTAGAAGTTGCATTGTTAAATAAAGTCACTGCCAAGGATCATGAAGG
AGGTAGCTTTCTCTAAACTTTGGCCCAGAGAGGCTGCTTCCTGGTTCCCTAGATGGACTAAATA
TCTGCTGTGTGTCTTCATATCCTCTATAGTCACAATTAGGCCTAGTTTACCTCTTAAAAATTTT
TTTGTTTTCCACTTATATTTGCCTTCCTGGGGAAGGAAGATTCAACCCAATTCTATGATTCTCT
GGATTCATTTTTCCAAGTTTTTCAATGAGTTAGTGAGATTCCTCATTCATGAATCCTGTAGAGT
GTGTCCTTTTCCAGTGCTAAAATTGATTTCAAATAGCACTTTATTTCATGCTTACTACTGATTT
AATTTATACATTAAAAATATCTATCCTAGGAATTTTGTAAATACAGAAAAGCAATTGATTAGTA
GTAAAGTTTATTAGATTGGCCCCAAGTTTAAATGCTTTATAATGATCTCTTGATAGCTTCTTTG
ATATTTAAGAGGTAACCTATGTGATTGAAGCTCTGCCATTTTCCTGTAATCTGTGTAGTACAGT
GGAGGCTGGCCCAGCTGGCTGTATTGCTGGACTTACTTCTCTCAGCTAGCTTCAGCCAAGCTTG
GTTGCTAAAACTGTTGATCTGCTCTGCATTTTGTGGACATGACATGAATGTTTGGAAAGCTGTT
TTTTGTCAGTGTAGTACCTAGAGATTCAGTAGATGCTGCACCACCAGTTCATAGTTTATATGGA
AGACAAAGGACAGAATTTATGACATAACAGTTTCTGTTAAGCTGTTTTCATATTCTGCCAGGAC
AGTATATCTGCTGTAAAAAAAATAAAAGTTGTCTACCCTAGTGGTGCCCAGCATCAGAACACAC
CAATTATAAACCATGCTGTGAGCTTTTCAAATAAGAAAGGCTGGTCCTTGTTTTCTATAGTGCA
GGTTAACTTTAGGACTGATGGCTTATACTTATCAGTACTATTTTAAACGTTAGCTTAAAAATTA
TTTTTATGTAGAGGGTATTTTAATTTGGGAACTTTCTTTTCTTGTAATAGGTGCTATATGTAAA
TATGGAGTGAGAATTTGCTTCATTAAAGGTCTAGCTTATTTCCCCTTAATCTAAAGCGCTCATT
TAATCTCCCATTTCTGTTTCCATTTCATGGTTTGTACTAAACTAATAGCAGAATGAATTAGTCC
CTTAAGGCTGTAACTACCTTTTCTCCCAGTTGTACAAAAATATCTCCATTCGGTTTCATCTCAG
ATTAAGAGGCAAAGAAGCTAAGAATGAAAACAAAATGCATAAGCTTGAATTTGGTCAACACTGG
ACTATTTGAAATGATCACTGTGTATTTGTCACTGCAGTTTACTGTGTCTGAAAGGCATTGTGTG
TGTGTCTTAATTTCAGTGAAAATCAGAATTCCTGCCATTCATGTTTAAACAAGTCACACATAGC
AACAGTGAACAGGATAAAAATGCGGGTTTGCATTGAAACCGTTTTAGTCCTAACCTCAATTTAT
ATTATGCAAAACACATTTACAGACATTTTGTTGGTTATGTTTCATTTTGATTTAGTACTTGTTC
AGGTACAAATTCGAAAAGAAAACAATAGCTGTTAATGTTCGATTGAGAAATAAAGATCCTCGTT
AGTAACCTAA

hide sequence

RefSeq Acc Id:

XM_017598666 ⟹ XP_017454155

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	33,324,808 - 33,504,647 (-)	NCBI
mRatBN7.2	13	30,772,012 - 30,952,336 (-)	NCBI
Rnor_6.0	13	35,678,783 - 35,858,413 (-)	NCBI

Sequence:

show sequence

TTCTCCTTTGCACTCTCACACAGAGCCGCCTCCCTGGAGTCACCCGCCGCCTCTCGCCGCGCGC
GCTTCCCTGCTCCGCGGACGCGACATTGTTCTTGAAGACTCCCGGGACCTGTCAGAAATCGGGG
CTCCGGGACTTGAAAGAGACTTGACTTCGGCTCGCGGGTTGCGGGGACCGCGGTACTTTCGGGG
CGCGTGTGAGGGGATTAGCTCATCTCGCCGCGAGGTGCGAGCGCGTGCCTCCCCGCGCACGCTG
GCCCCGCCGCAGCCCCGCAGGATGACGGGGTGCAGGCGGCCCGCGGCCGTGGCGCGGCCGCTGT
GGCGGCGGCTGTTCGCGGGGCGCTGAGGGCGAGCACCCGGACGCGGACCACGCGCCCCTTTCCC
CCGGCCACGAGCCCGGGGCCTCCTGGCTTTTTGTATTTGGATTTTGTTTTTCTTTCCCCAGCCG
AGAGGACGCGGCTGTGACAACGAAGGTTTTGTGCGGACAGTAATGACCGCACGTTTCCGATTGC
CTGCTGGCAGAACCTACAATGTCCGAGCATCAGAGTTGGCCCGAGACAGACAGCATACAGAGGT
GGTTTGCAACATTCTTCTTCTGGATAACACTGTACAGGCATTCAGAGTTAATAAACATGATCAG
GGGCAAGTTCTGTTGGATATAGTCTTCAAGCATCTTGATCTGACTGAGCGAGACTATTTTGGTT
TACAGTTGGCTGATGATTCCACAGATAACCCAAGGTGGCTGGATCCAAACAAACCAATAAGGAA
GCAGCTAAAGAAGCTGTTTTTGTTAATTCTAGGAGGATCACCTTACAATTTGAACTTTAGAGTC
AAATTCTTTGTAAGTGACCCCAACAAGTTACAAGAAGAATATACAAGGTATCAGTATTTTTTGC
AAATTAAGCAAGACATTCTTACTGGAAGATTATCCTGTCCTTGTAACACTGCTGCTCTTTTAGC
TTCATTCGCTGTTCAGTCTGAACTTGGAGACTACAATCAGTCAGAAAACTTGGCAGGCTACCTC
TCAGATTATTCTTTCATTCCTAATCAACCTCAAGATTTCGAGAAAGAAATTGCAAAGTTACATC
AGCAGCATATTGGCTTATCTCCTGCAGAAGCAGAATTTAATTACCTAAACACAGCACGTACCCT
GGAACTCTATGGAGTTGAATTTCACTATGCAAGGGATCAAAGTAACAATGAAATCCTGATTGGA
GTGATGTCAGGAGGAATTCTGATTTACAAGAACAGGGTACGGATGAATACTTTTCTGTGGTTGA
AGATTGTAAAAATTTCTTTTAAATGCAAACAATTTTTTATTCAACTTCGAAAAGAATTGCATGA
ATCTAGAGAAACATTACTTGGATTTAATATGGTGAATTATAGAGCGTGTAAAACTTTGTGGAAA
GCGTGTGTAGAACATCACACATTCTTCCGCCTGGATAGACCACTTCCACCTCAAAAGAACTTTT
TTGCACATTATTTTACATTGGGTTCCAAATTCCGGTACTGTGGGAGAACTGAAGTCCAGTCAGT
TCAGTATGGCAAAGAAAAGGCAAATAAAGACAGGGTATTTGCAAGATCTCCAAGTAAGCCTTTG
GCCCGGAAATTAATGGATTGGGAAGTAGTCAGCAGAAATTCGTTATCTGATGACAGGTTAGAAA
CACAAAGTCTCCCATCCCGGTCTCCACCTGGAACTCCCAACCATCGAAATTCTTCATTCACACA
AGAGGGGACCCGGGTTCGGCCGTCTTCAGTTGGTCATTTGGTAGACCATGTGGTTCATACATCC
CCCAGTGAGGATTTTGTAAGTCAGAGATCTCCATCATCAACGCAAGCTAATAGCATAGTTCTGG
AATCATCACCATCACAAGAGACCCCTGAAGATGGGCAGCCTCCAGCTTTACCACCCAAACAATC
TAAGAAAAACAGTTGGAACCAAATTCATTTTTCACATTCTCAGCAAGATCTAGTCAACCATACT
AATGAATCCTTTGATGTGCCCTCTTCCCCTGAAAAGTCCACTCCTAATGGTGGCATTCCACATG
ATAACCTTGTTCTAATCAAAATGAAACCTGATGAGAATGGAAGGTTTGGATTCAATGTAAAGGG
AGGGTATGATCAGAAGATGCCTGTAATTGTGTCCCGGGTAGCACCAGGAACACCTGCTGACCTC
TGTGTCCCTCGGTTGAATGAAGGGGACCAAGTGGTACTCATAAATGGCCGGGATATTGCAGAAC
ACACCCATGATCAAGTAGTCTTATTTATTAAAGCTAGCTGTGAGAGACATTCTGGGGAACTTGT
GCTCCTAGTTCGACCTAATGCTGTATATGACGTAGTGGAAGAAAAACTAGAAAGTGAGCCAGAC
TTCCAGTATATTCCTGAAAAAGCCCCTCTAGATAGTGTCCATCAAGATGACCATTCCCTGCGGG
AGTCGATGATCCAGCTAGCTGAGGGGCTTATCACTGGAACAGTACTGGCACAGTTTGATCAACT
GTATCGGAAAAAACCTGGAATGACAATGTCTTGTGCCAAATTACCTCAGAACATTTCCAAAAAC
AGATACAGAGATATTTCACCTTATGACGCTACACGGGTCCTTTTAAAAGGTAATGAAGACTACA
TCAATGCAAACTATATAAATATGGAAATTTCTTCTTCGAGTATTATAAATCAATACATTGCTTG
TCAAGGGCCATTACCACATACTTGTAAAGATTTTTGGCAAATGACTTGGGAACAAGGCTCCTCC
ATGGTTGTGATGTTGACCACACAAGTTGAACGTGGCAGAGTTAAATGTCACCAGTATTGGCCAG
AACCCTCAGGAAGCTCATCCTATGGATGCTATCAAGTCACCTGCCACTCTGAAGAAGGAAATCC
TGCGTATATCTTCAGGAAAATGACACTGTTTAACCAAGAGAAAAATGAGAGTCGCCAACTCACT
CAGATTCAGTACACAGCCTGGCCTGACCATGGGGTACCTGACGACTCAAGTGACTTTCTGGATT
TCGTTTGTCATGTCCGAAACAAGAGGGCTGGAAAAGAAGAGCCGATTATTGTTCATTGCAGTGC
TGGAATAGGAAGGACTGGGGTTCTCATCACTATGGAAACTGCTATGTGTCTCATTGAATGCAAT
CAGCCAGTGTATCCACTAGACATTGTAAGAACAATGAGAGATCAAAGAGCCATGATGATCCAAA
CCCCTAGTCAATACAGATTTGTATGTGAAGCTATTTTGAAAGTTTATGAAGAAGGCTTTGTTAA
ACCATTAACAACATCATCAAATAAATAAGAAAGCAAAAAGGTTGGAATAAGTACTGGGAACCTG
AGTTTGTTACATTCACTGTGCCATAATACTGCTTGCAGGAAATGGCCTCTCACACAAAAAGTGA
AGAACTCAAAGAGACCTCGAGAACTTCAGCACTACTGCACTTTATGTTTCAAAAAGTCACTCAG
AACTTACCACATGTTTGAATACTTTGTGCTTTGCTCTGAACAAATAGTGGAAACTGGGTATGTT
CAGAGTAATTTATGGAATTGTGAGGCATTGCCATGCAGTCCCTTCTGGTAGAATTGCCGCCGAC
AAGGCTCAGATTCTCATCTCTGTCACACACCTGTACCTTGAAAGCAGAAGGAGTTATCATCAGG
AGTCTGCTCTGGATTTTCCCAGGGGTCATGCCCTCACTCTACTGATTACCAGATTTTATTTTTC
AAACGTTAGCAATACCATTCTCAACATTAGCCAGTACACTGCCTGTGGGTGCAGCACATCTTCC
TAACGTCCCCGTGGGGACCTGCTGTTGAGAAGAAAATTGGAACTTGCTGTTCCCAGGAAATGCT
GCACAGTGTCCATTTACCAGCATCTTATAGAAATAACTATGAATTTTCTTGGATTTAATAATGT
AACTTATATTTATCATAAGGTTGGCTTATTCCAAATCATGTGATTTCACAGTCTTGATGTAAAG
GAATGCATGCATCGTGTCTTAACCCCTTAAGTGCCTTGAGATATCTTTGTCTAATGAAAAGGCA
CTCATTTGACCCCATAGGAGGTATGTATGTATACTGTACATTCTTATAGTTTTACGAATTTTTA
ATGAGATCACAGTGTTTTAAAAAGCTGTTTTAAAAACCAGCTTCTTATGTTGAGAGTTATACAA
ACAGCAAAGGGTAAGGCCATTCTGTCTTTTACTCAGTGCTTGTACTTTGCCGTAAAAGCCAGGA
TATCTGTATTCTGCCCAGAGTGCATCTGCTGCTATGGAATTGTTCACAATCTGCACATTCCTTT
ACCGAAGGGAAGGATAGGGGTTAAAGTTTAGCAGCTTAACTTAAAAAGAGGGTTTATTCTTCAG
ATTTCACATTTACTTTATCCTAAGGTAAGAATTGATGTTTAATATGTGCATCAAAGATAAATAT
ATTGGTATTCTAGGTTACAGTGAGAAAGTCGATCAGCTGGGTTATGCACCCGTAACTGACGAGC
TGCCCTGGAGCATCATCACTCCAAGGCCTGTCAGGCTGGCTCACACTGCTCCTTCCTTCCACTG
GGGTTCTTCACACAAGGAGTTAAACACTTTAGCATTCTCTAAAGTGACCCTTCCTTGTCATCCA
GTTTATATATGCCTGTTAAATTATAAGCATGTCAGTAAGTAGGCCATCTTAACGGAAGATCCAA
CTCCCATTACAGATATGTCTGTTTTCCTTGTTTTAAGTCTGTGGAGACAGATTTTTAAAATTGC
ACAATTTAATGTGAGAACTTGCTCACCTATTCACATGTTATTTTATAAGGATATGGTTAAAATA
GACACATTTACTAGTGGTTTTCAGATTACTTCTGTAGTCTCGATAAAACATAGGTCCCAATGGT
AGATATTTTGGAATGCTATTTAGTTGAGGGAATGATACACATTTAAAAAATCTTTAGTAACATA
TAAATTATTGCTTCAGGTATTCAGAACCCATAATAGTAAAATTCAAAAGTTAAGCTTCTAAATA
TTAATTGCCAGGGTACCAAATAAATTGGCACTTATAAATACTTCTTGTCTTTTTTTTAAAGAAA
GAAATAAACATCTTTACATCAAACAGAAGTCCCCTTATTATGATTTCACAAGCAAGACAATAAT
ATAAGTTCGTAAGTGAACTATAATTATACTCAGACATTCCATTCTGTAACCAGAGGCAAATGTA
ATTTAGGCTGGTAAGCTATCATTACAACTTAAAAAGGGGAAACAAGCTAGAGATCTATGTTATA
AAGCTATTTTATTTCATTGGTGGATTTTAGCCTAAATTTTATATCTTGCCATGTGGGTAGAAGG
TGATAAGTGTAGACAGGAAGAGAAAAGCTGTGTAGAAAGGCAGTGTCATGGTTCGTTTGCTCTT
CAATGTAAAGCTTTGGGTACATCTCTGGTTAGCACTGATGTTGGCAGCAGGCATTGCTGCCTTT
TAAATCAGCAGTGCTTAATCTGAAATGACAAGTGTAGAATTAAATTCAAATTTATCATAGCAGT
TTCTTATCTGAGAACTATGCTCCATTCGTGTTTTACATCTGAAGACAGCCCTTTTAGAACATTT
ATTAGGATCTTAAGCTAAACTTAGCCTTCACAAATTGTTAATATAGATATGCTAACTAAACTTT
CCTAGTTACCTAACAGAACACTTGTCTTTTCCACCTAAGCATCTAACCAGTTTATGAATCTAAA
TAGGTTACTAGAAATAATGCTAGTTTTCATATGCCAAGTACTGCTCCACTCCATAGATATTGAT
ATAATATTGTGTGACAAAAACCAAATTTCTTGAACCAAACTACTTTTCCATTACTACTTAGCCA
CCCTTAAGCTCACACCCCAACAAACTCAAGAACAAATCAATGCATTTCTTCGGACAAGGAGAAG
TTAGTATTGGTGAGTTAGGGCTTCTGTACATGCTAAGAGTAAACATGACTTTTCTGCTTCTTTC
ATAGGGCATTTAGTTTTGTCAGCACTAGATGCTCTGTAGTAATCTTTTGGAGTAGACTTTGCAT
TCACAAAAAGAATAGGTTGTATTTGTTAAACTAATCCATTCATTCAAAAGTGAGACAGAATAAA
CAGCCCAAGAACAGTTTTTGTATAGCTTGCTGGGACAAGTAATTGGGAAAGGGCAATGATTGAT
CATTTTGACTTCAGAATAAAGGTAACATTGTATAAAAAATGACTTCACAAGCAGTTATGCTGAG
CCATTAGGACAGATGCTTGAAAATTTGGGGTACTACTGTAGCTGCCTTCAAAGAGAAACATCAG
TGTGTTGGTTTGCATGTGTACTTACTTCATAAAGACATGTTCACAGATTGAAAGGACTTTTAAC
CATGGGGTTGTTTATATCTCTTGGCAGACCAAGTCTAATGAGTTATTTGAAAAAAAAAAAATCT
CCATGTCACTAGAAGTAGTACTACACCTTGAGAGCTAAAAATTTGAAAGATTTTATCCACTCTC
TGTGTCCTTGTTATTATAGAAAGGACTACAGGCCCAACAATTAATTTAGCAGAATCTGCTCATC
TTCAGGTTTTCTAATTCTCAATTTAGTGTCTCTGTATTAGACTGTAGCTTCAGTAAATTGTGAC
AAATGCTTGTAAGTTTTTCTACTTGGGAAGTATGCTCAGTGTTGTCACTTAAACCTGTAACACC
TTAGAAGTTGGAAAGGAGACTTCAAAAGTGATGCCAATGAGGACTTGGACTCAGTTTTCTGGTG
CTTCCCAGACAGATTAGCATAAACTATTGTGAAGTATTTAGGCTGATACACATGCAGTATAAAA
CTGAAATGCAAGTAGGAAAGCATTTTTAAAGCACTTAAAACGTGGACCTGAGATTTAGATCTTA
TACCTACTTACAAAATAATATGTTCATGTGAACATGTGATAAAAAGGAAATATAGCTTGTTTAG
CAGGAAGAGAGAAGGAAACATGAACTTATAGCAATATGCTATTTAATGTCTGTGTTTTGAATAT
TTAAAATATCTGATGGTAAAATTGCCAAAGTAGTTTGAATTCATGTAAGTTGTTTATACTACAA
CAATGTGGGATATGTTTACAGGCTCTTTATAGTGCTTACTTTGTAGTTCTGATGAAGTTTGTAG
TTTGTATTTAAGTCATTTATAGTAAATGTATGATAAATATTTGCTGGAATAAATATCTCAGTAA
TATAGCAAAACGTATCTAAGTAATCCCACAGTCTGCTTTCATACAAGGTGCTTTGTCCAGAAAA
GCAAGTACTTTGTGACACCATTGCTTACACCCCACATTTGCACCAACTGTCCAACTACATTCCT
GGAACCCTGTGTGGTGGGTGCTGCCTCCAAGTAAAACAGCTGTGTTACTATAATTATATCAGAG
TTACTAATCTATTAACAGATATTTGTGTCTCAGTGTGATCACAAATTGAGTGACTTTTATGAAA
TTCTTAGAAAATTATATACATGCAAAGAAATTTATTTAATCTTAAAACTTTTTGAGGGCTAATT
GCTAATAGATAATGTTATCAATTTTAAGAGTAAAAGAAATCAATCCCAGAATTATATGTTTTGA
GTTCTGCTTTTTACCACAATTCTTATTTTGCATAGATTTCATTTACTCTTAGTAGTACTTATTA
TAATATATTTCTCTATGTTATCAGAAACAACAACCCATGTATTCCGGCCCACAATTACTTGATT
TTCATGCCTTATTGAATTCTTTTGAGTAGGTACCATAATGTTATTTTCTGTTTCCATCTATCAG
TGTGACGCTGCTTATTTTACAGTTTTCTACTGTGGAACACTGTTGATTTCTAAAGTCATTATTT
ATTTTTTTTTTAAGTCCTCCGAAGGTAAATGAGCAGCCATTAGTTCTAGCTTTTTGGTGGCAGT
CCATCTGTATTGGCTAGGTATGGTTCAGTGCATAAACAAGTACACCATTTTGCAGAAAGTTATT
AGCAATATTTCAAGTTAAAAACTACACTGTTCAGGAAGAGTTCAAACGTTTAACTTCCTGGAGC
CTTGTAAATTTTCCAGTATAAGAATGAAAAAGAAAGCCTTGGTAAGTTCATAAAAGTTTCAAAT
AAACACTGTAGAGTTTTCCTATTATGTAAATGATATACAGAAAATATTTTTCTATGAACAGAAG
GTTAAAACTGTTAACTTTAATTTCATTGCTTAAAAGGGATAAAACAATATTTGTATGTCTTTCA
TGCTGTAAAGAAAATGAATGTATCTTTCAAATGTTAGAGTCATTACTTGATTGTAAGTATATGT
GTTTTTAAAAATCTGTAAAGGGTTGAAAAGAAGAGTATTACAAGTCATTATGTAAGACGCAATG
TTGGAAGAAATGGAATTTCATTATAAATGAGCAGTCACTATCAAAGCATATTTCAGTATAGTGC
ATATTCATTTTCACATTGCTTTGTTTTATCTCTAGAAATGTTTCTTAAAAATTGTGTATACTGT
TTTGGGTATACACTAATTGGTTTCTACACTTGTGTGTTAGGCTCAGTGTGCTGCTGCATGTGTC
TACCATGGGGAAAAGTTACCAAGTTTTGTCAATGTCGAAGCCACCAATGGGGGCATCATTGTTA
GAATGTGAAACCCATGCCTAGGAGCCACTGCAGCAACTCTGTGCAGAGGCCTCTGACTGTGCTA
ATGTGTTTCCCTTTTTATCTTCAATGACATGGATAGTAAGACTACTGGGCCCAACTCTCCTGAC
TTGTGGTGGTTTGTATGCTTACAACTTTATTCAGCTAGTGCCCGTAGGTGTGAATGATTTGTTC
ATTAGCTCTTTAAATCTAGTATTTATCAGTTATTAAACTTGATGAAAATTGGGAATTCATTGTT
TTGACACTTTTCTAGCCATCCATACTAATTTTAACTCATCATGATGGACCCTGAACAACCAAAA
AGTGATCCCTGGTTAGTGTCAGATTTCCTCTACCCCAGCATTTACAAGGTTGACTGATGACTTA
GAAGTTGCATTGTTAAATAAAGTCACTGCCAAGGATCATGAAGGAGGTAGCTTTCTCTAAACTT
TGGCCCAGAGAGGCTGCTTCCTGGTTCCCTAGATGGACTAAATATCTGCTGTGTGTCTTCATAT
CCTCTATAGTCACAATTAGGCCTAGTTTACCTCTTAAAAATTTTTTTGTTTTCCACTTATATTT
GCCTTCCTGGGGAAGGAAGATTCAACCCAATTCTATGATTCTCTGGATTCATTTTTCCAAGTTT
TTCAATGAGTTAGTGAGATTCCTCATTCATGAATCCTGTAGAGTGTGTCCTTTTCCAGTGCTAA
AATTGATTTCAAATAGCACTTTATTTCATGCTTACTACTGATTTAATTTATACATTAAAAATAT
CTATCCTAGGAATTTTGTAAATACAGAAAAGCAATTGATTAGTAGTAAAGTTTATTAGATTGGC
CCCAAGTTTAAATGCTTTATAATGATCTCTTGATAGCTTCTTTGATATTTAAGAGGTAACCTAT
GTGATTGAAGCTCTGCCATTTTCCTGTAATCTGTGTAGTACAGTGGAGGCTGGCCCAGCTGGCT
GTATTGCTGGACTTACTTCTCTCAGCTAGCTTCAGCCAAGCTTGGTTGCTAAAACTGTTGATCT
GCTCTGCATTTTGTGGACATGACATGAATGTTTGGAAAGCTGTTTTTTGTCAGTGTAGTACCTA
GAGATTCAGTAGATGCTGCACCACCAGTTCATAGTTTATATGGAAGACAAAGGACAGAATTTAT
GACATAACAGTTTCTGTTAAGCTGTTTTCATATTCTGCCAGGACAGTATATCTGCTGTAAAAAA
AATAAAAGTTGTCTACCCTAGTGGTGCCCAGCATCAGAACACACCAATTATAAACCATGCTGTG
AGCTTTTCAAATAAGAAAGGCTGGTCCTTGTTTTCTATAGTGCAGGTTAACTTTAGGACTGATG
GCTTATACTTATCAGTACTATTTTAAACGTTAGCTTAAAAATTATTTTTATGTAGAGGGTATTT
TAATTTGGGAACTTTCTTTTCTTGTAATAGGTGCTATATGTAAATATGGAGTGAGAATTTGCTT
CATTAAAGGTCTAGCTTATTTCC

hide sequence

RefSeq Acc Id:

XM_017598667 ⟹ XP_017454156

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	33,324,808 - 33,504,647 (-)	NCBI
mRatBN7.2	13	30,772,012 - 30,952,340 (-)	NCBI
Rnor_6.0	13	35,678,783 - 35,858,414 (-)	NCBI

Sequence:

show sequence

GTTCTCCTTTGCACTCTCACACAGAGCCGCCTCCCTGGAGTCACCCGCCGCCTCTCGCCGCGCG
CGCTTCCCTGCTCCGCGGACGCGACATTGTTCTTGAAGACTCCCGGGACCTGTCAGAAATCGGG
GCTCCGGGACTTGAAAGAGACTTGACTTCGGCTCGCGGGTTGCGGGGACCGCGGTACTTTCGGG
GCGCGTGTGAGGGGATTAGCTCATCTCGCCGCGAGGTGCGAGCGCGTGCCTCCCCGCGCACGCT
GGCCCCGCCGCAGCCCCGCAGGATGACGGGGTGCAGGCGGCCCGCGGCCGTGGCGCGGCCGCTG
TGGCGGCGGCTGTTCGCGGGGCGCTGAGGGCGAGCACCCGGACGCGGACCACGCGCCCCTTTCC
CCCGGCCACGAGCCCGGGGCCTCCTGGCTTTTTGTATTTGGATTTTGTTTTTCTTTCCCCAGCC
GAGAGGACGCGGCTGTGACAACGAAGGTTTTGTGCGGACAGTAATGACCGCACGTTTCCGATTG
CCTGCTGGCAGAACCTACAATGTCCGAGCATCAGAGTTGGCCCGAGACAGACAGCATACAGAGG
TGGTTTGCAACATTCTTCTTCTGGATAACACTGTACAGGCATTCAGAGTTAATAAACATGATCA
GGGGCAAGTTCTGTTGGATATAGTCTTCAAGCATCTTGATCTGACTGAGCGAGACTATTTTGGT
TTACAGTTGGCTGATGATTCCACAGATAACCCAAGGTGGCTGGATCCAAACAAACCAATAAGGA
AGCAGCTAAAGAAGCTGTTTTTGTTAATTCTAGGAGGATCACCTTACAATTTGAACTTTAGAGT
CAAATTCTTTGTAAGTGACCCCAACAAGTTACAAGAAGAATATACAAGGTATCAGTATTTTTTG
CAAATTAAGCAAGACATTCTTACTGGAAGATTATCCTGTCCTTGTAACACTGCTGCTCTTTTAG
CTTCATTCGCTGTTCAGTCTGAACTTGGAGACTACAATCAGTCAGAAAACTTGGCAGGCTACCT
CTCAGATTATTCTTTCATTCCTAATCAACCTCAAGATTTCGAGAAAGAAATTGCAAAGTTACAT
CAGCAGCATATTGGCTTATCTCCTGCAGAAGCAGAATTTAATTACCTAAACACAGCACGTACCC
TGGAACTCTATGGAGTTGAATTTCACTATGCAAGGGATCAAAGTAACAATGAAATCCTGATTGG
AGTGATGTCAGGAGGAATTCTGATTTACAAGAACAGGGTACGGATGAATACTTTTCTGTGGTTG
AAGATTGTAAAAATTTCTTTTAAATGCAAACAATTTTTTATTCAACTTCGAAAAGAATTGCATG
AATCTAGAGAAACATTACTTGGATTTAATATGGTGAATTATAGAGCGTGTAAAACTTTGTGGAA
AGCGTGTGTAGAACATCACACATTCTTCCGCCTGGATAGACCACTTCCACCTCAAAAGAACTTT
TTTGCACATTATTTTACATTGGGTTCCAAATTCCGGTACTGTGGGAGAACTGAAGTCCAGTCAG
TTCAGTATGGCAAAGAAAAGGCAAATAAAGACAGGGTATTTGCAAGATCTCCAAGTAAGCCTTT
GGCCCGGAAATTAATGGATTGGGAAGTAGTCAGCAGAAATTCGTTATCTGATGACAGGTTAGAA
ACACAAAGTCTCCCATCCCGGTCTCCACCTGGAACTCCCAACCAATCACAAGAGACCCCTGAAG
ATGGGCAGCCTCCAGCTTTACCACCCAAACAATCTAAGAAAAACAGTTGGAACCAAATTCATTT
TTCACATTCTCAGCAAGATCTAGTCAACCATACTAATGAATCCTTTGATGTGCCCTCTTCCCCT
GAAAAGTCCACTCCTAATGGTGGCATTCCACATGATAACCTTGTTCTAATCAAAATGAAACCTG
ATGAGAATGGAAGGTTTGGATTCAATGTAAAGGGAGGGTATGATCAGAAGATGCCTGTAATTGT
GTCCCGGGTAGCACCAGGAACACCTGCTGACCTCTGTGTCCCTCGGTTGAATGAAGGGGACCAA
GTGGTACTCATAAATGGCCGGGATATTGCAGAACACACCCATGATCAAGTAGTCTTATTTATTA
AAGCTAGCTGTGAGAGACATTCTGGGGAACTTGTGCTCCTAGTTCGACCTAATGCTGTATATGA
CGTAGTGGAAGAAAAACTAGAAAGTGAGCCAGACTTCCAGTATATTCCTGAAAAAGCCCCTCTA
GATAGTGTCCATCAAGATGACCATTCCCTGCGGGAGTCGATGATCCAGCTAGCTGAGGGGCTTA
TCACTGGAACAGTACTGGCACAGTTTGATCAACTGTATCGGAAAAAACCTGGAATGACAATGTC
TTGTGCCAAATTACCTCAGAACATTTCCAAAAACAGATACAGAGATATTTCACCTTATGACGCT
ACACGGGTCCTTTTAAAAGGTAATGAAGACTACATCAATGCAAACTATATAAATATGGAAATTT
CTTCTTCGAGTATTATAAATCAATACATTGCTTGTCAAGGGCCATTACCACATACTTGTAAAGA
TTTTTGGCAAATGACTTGGGAACAAGGCTCCTCCATGGTTGTGATGTTGACCACACAAGTTGAA
CGTGGCAGAGTTAAATGTCACCAGTATTGGCCAGAACCCTCAGGAAGCTCATCCTATGGATGCT
ATCAAGTCACCTGCCACTCTGAAGAAGGAAATCCTGCGTATATCTTCAGGAAAATGACACTGTT
TAACCAAGAGAAAAATGAGAGTCGCCAACTCACTCAGATTCAGTACACAGCCTGGCCTGACCAT
GGGGTACCTGACGACTCAAGTGACTTTCTGGATTTCGTTTGTCATGTCCGAAACAAGAGGGCTG
GAAAAGAAGAGCCGATTATTGTTCATTGCAGTGCTGGAATAGGAAGGACTGGGGTTCTCATCAC
TATGGAAACTGCTATGTGTCTCATTGAATGCAATCAGCCAGTGTATCCACTAGACATTGTAAGA
ACAATGAGAGATCAAAGAGCCATGATGATCCAAACCCCTAGTCAATACAGATTTGTATGTGAAG
CTATTTTGAAAGTTTATGAAGAAGGCTTTGTTAAACCATTAACAACATCATCAAATAAATAAGA
AAGCAAAAAGGTTGGAATAAGTACTGGGAACCTGAGTTTGTTACATTCACTGTGCCATAATACT
GCTTGCAGGAAATGGCCTCTCACACAAAAAGTGAAGAACTCAAAGAGACCTCGAGAACTTCAGC
ACTACTGCACTTTATGTTTCAAAAAGTCACTCAGAACTTACCACATGTTTGAATACTTTGTGCT
TTGCTCTGAACAAATAGTGGAAACTGGGTATGTTCAGAGTAATTTATGGAATTGTGAGGCATTG
CCATGCAGTCCCTTCTGGTAGAATTGCCGCCGACAAGGCTCAGATTCTCATCTCTGTCACACAC
CTGTACCTTGAAAGCAGAAGGAGTTATCATCAGGAGTCTGCTCTGGATTTTCCCAGGGGTCATG
CCCTCACTCTACTGATTACCAGATTTTATTTTTCAAACGTTAGCAATACCATTCTCAACATTAG
CCAGTACACTGCCTGTGGGTGCAGCACATCTTCCTAACGTCCCCGTGGGGACCTGCTGTTGAGA
AGAAAATTGGAACTTGCTGTTCCCAGGAAATGCTGCACAGTGTCCATTTACCAGCATCTTATAG
AAATAACTATGAATTTTCTTGGATTTAATAATGTAACTTATATTTATCATAAGGTTGGCTTATT
CCAAATCATGTGATTTCACAGTCTTGATGTAAAGGAATGCATGCATCGTGTCTTAACCCCTTAA
GTGCCTTGAGATATCTTTGTCTAATGAAAAGGCACTCATTTGACCCCATAGGAGGTATGTATGT
ATACTGTACATTCTTATAGTTTTACGAATTTTTAATGAGATCACAGTGTTTTAAAAAGCTGTTT
TAAAAACCAGCTTCTTATGTTGAGAGTTATACAAACAGCAAAGGGTAAGGCCATTCTGTCTTTT
ACTCAGTGCTTGTACTTTGCCGTAAAAGCCAGGATATCTGTATTCTGCCCAGAGTGCATCTGCT
GCTATGGAATTGTTCACAATCTGCACATTCCTTTACCGAAGGGAAGGATAGGGGTTAAAGTTTA
GCAGCTTAACTTAAAAAGAGGGTTTATTCTTCAGATTTCACATTTACTTTATCCTAAGGTAAGA
ATTGATGTTTAATATGTGCATCAAAGATAAATATATTGGTATTCTAGGTTACAGTGAGAAAGTC
GATCAGCTGGGTTATGCACCCGTAACTGACGAGCTGCCCTGGAGCATCATCACTCCAAGGCCTG
TCAGGCTGGCTCACACTGCTCCTTCCTTCCACTGGGGTTCTTCACACAAGGAGTTAAACACTTT
AGCATTCTCTAAAGTGACCCTTCCTTGTCATCCAGTTTATATATGCCTGTTAAATTATAAGCAT
GTCAGTAAGTAGGCCATCTTAACGGAAGATCCAACTCCCATTACAGATATGTCTGTTTTCCTTG
TTTTAAGTCTGTGGAGACAGATTTTTAAAATTGCACAATTTAATGTGAGAACTTGCTCACCTAT
TCACATGTTATTTTATAAGGATATGGTTAAAATAGACACATTTACTAGTGGTTTTCAGATTACT
TCTGTAGTCTCGATAAAACATAGGTCCCAATGGTAGATATTTTGGAATGCTATTTAGTTGAGGG
AATGATACACATTTAAAAAATCTTTAGTAACATATAAATTATTGCTTCAGGTATTCAGAACCCA
TAATAGTAAAATTCAAAAGTTAAGCTTCTAAATATTAATTGCCAGGGTACCAAATAAATTGGCA
CTTATAAATACTTCTTGTCTTTTTTTTAAAGAAAGAAATAAACATCTTTACATCAAACAGAAGT
CCCCTTATTATGATTTCACAAGCAAGACAATAATATAAGTTCGTAAGTGAACTATAATTATACT
CAGACATTCCATTCTGTAACCAGAGGCAAATGTAATTTAGGCTGGTAAGCTATCATTACAACTT
AAAAAGGGGAAACAAGCTAGAGATCTATGTTATAAAGCTATTTTATTTCATTGGTGGATTTTAG
CCTAAATTTTATATCTTGCCATGTGGGTAGAAGGTGATAAGTGTAGACAGGAAGAGAAAAGCTG
TGTAGAAAGGCAGTGTCATGGTTCGTTTGCTCTTCAATGTAAAGCTTTGGGTACATCTCTGGTT
AGCACTGATGTTGGCAGCAGGCATTGCTGCCTTTTAAATCAGCAGTGCTTAATCTGAAATGACA
AGTGTAGAATTAAATTCAAATTTATCATAGCAGTTTCTTATCTGAGAACTATGCTCCATTCGTG
TTTTACATCTGAAGACAGCCCTTTTAGAACATTTATTAGGATCTTAAGCTAAACTTAGCCTTCA
CAAATTGTTAATATAGATATGCTAACTAAACTTTCCTAGTTACCTAACAGAACACTTGTCTTTT
CCACCTAAGCATCTAACCAGTTTATGAATCTAAATAGGTTACTAGAAATAATGCTAGTTTTCAT
ATGCCAAGTACTGCTCCACTCCATAGATATTGATATAATATTGTGTGACAAAAACCAAATTTCT
TGAACCAAACTACTTTTCCATTACTACTTAGCCACCCTTAAGCTCACACCCCAACAAACTCAAG
AACAAATCAATGCATTTCTTCGGACAAGGAGAAGTTAGTATTGGTGAGTTAGGGCTTCTGTACA
TGCTAAGAGTAAACATGACTTTTCTGCTTCTTTCATAGGGCATTTAGTTTTGTCAGCACTAGAT
GCTCTGTAGTAATCTTTTGGAGTAGACTTTGCATTCACAAAAAGAATAGGTTGTATTTGTTAAA
CTAATCCATTCATTCAAAAGTGAGACAGAATAAACAGCCCAAGAACAGTTTTTGTATAGCTTGC
TGGGACAAGTAATTGGGAAAGGGCAATGATTGATCATTTTGACTTCAGAATAAAGGTAACATTG
TATAAAAAATGACTTCACAAGCAGTTATGCTGAGCCATTAGGACAGATGCTTGAAAATTTGGGG
TACTACTGTAGCTGCCTTCAAAGAGAAACATCAGTGTGTTGGTTTGCATGTGTACTTACTTCAT
AAAGACATGTTCACAGATTGAAAGGACTTTTAACCATGGGGTTGTTTATATCTCTTGGCAGACC
AAGTCTAATGAGTTATTTGAAAAAAAAAAAATCTCCATGTCACTAGAAGTAGTACTACACCTTG
AGAGCTAAAAATTTGAAAGATTTTATCCACTCTCTGTGTCCTTGTTATTATAGAAAGGACTACA
GGCCCAACAATTAATTTAGCAGAATCTGCTCATCTTCAGGTTTTCTAATTCTCAATTTAGTGTC
TCTGTATTAGACTGTAGCTTCAGTAAATTGTGACAAATGCTTGTAAGTTTTTCTACTTGGGAAG
TATGCTCAGTGTTGTCACTTAAACCTGTAACACCTTAGAAGTTGGAAAGGAGACTTCAAAAGTG
ATGCCAATGAGGACTTGGACTCAGTTTTCTGGTGCTTCCCAGACAGATTAGCATAAACTATTGT
GAAGTATTTAGGCTGATACACATGCAGTATAAAACTGAAATGCAAGTAGGAAAGCATTTTTAAA
GCACTTAAAACGTGGACCTGAGATTTAGATCTTATACCTACTTACAAAATAATATGTTCATGTG
AACATGTGATAAAAAGGAAATATAGCTTGTTTAGCAGGAAGAGAGAAGGAAACATGAACTTATA
GCAATATGCTATTTAATGTCTGTGTTTTGAATATTTAAAATATCTGATGGTAAAATTGCCAAAG
TAGTTTGAATTCATGTAAGTTGTTTATACTACAACAATGTGGGATATGTTTACAGGCTCTTTAT
AGTGCTTACTTTGTAGTTCTGATGAAGTTTGTAGTTTGTATTTAAGTCATTTATAGTAAATGTA
TGATAAATATTTGCTGGAATAAATATCTCAGTAATATAGCAAAACGTATCTAAGTAATCCCACA
GTCTGCTTTCATACAAGGTGCTTTGTCCAGAAAAGCAAGTACTTTGTGACACCATTGCTTACAC
CCCACATTTGCACCAACTGTCCAACTACATTCCTGGAACCCTGTGTGGTGGGTGCTGCCTCCAA
GTAAAACAGCTGTGTTACTATAATTATATCAGAGTTACTAATCTATTAACAGATATTTGTGTCT
CAGTGTGATCACAAATTGAGTGACTTTTATGAAATTCTTAGAAAATTATATACATGCAAAGAAA
TTTATTTAATCTTAAAACTTTTTGAGGGCTAATTGCTAATAGATAATGTTATCAATTTTAAGAG
TAAAAGAAATCAATCCCAGAATTATATGTTTTGAGTTCTGCTTTTTACCACAATTCTTATTTTG
CATAGATTTCATTTACTCTTAGTAGTACTTATTATAATATATTTCTCTATGTTATCAGAAACAA
CAACCCATGTATTCCGGCCCACAATTACTTGATTTTCATGCCTTATTGAATTCTTTTGAGTAGG
TACCATAATGTTATTTTCTGTTTCCATCTATCAGTGTGACGCTGCTTATTTTACAGTTTTCTAC
TGTGGAACACTGTTGATTTCTAAAGTCATTATTTATTTTTTTTTTAAGTCCTCCGAAGGTAAAT
GAGCAGCCATTAGTTCTAGCTTTTTGGTGGCAGTCCATCTGTATTGGCTAGGTATGGTTCAGTG
CATAAACAAGTACACCATTTTGCAGAAAGTTATTAGCAATATTTCAAGTTAAAAACTACACTGT
TCAGGAAGAGTTCAAACGTTTAACTTCCTGGAGCCTTGTAAATTTTCCAGTATAAGAATGAAAA
AGAAAGCCTTGGTAAGTTCATAAAAGTTTCAAATAAACACTGTAGAGTTTTCCTATTATGTAAA
TGATATACAGAAAATATTTTTCTATGAACAGAAGGTTAAAACTGTTAACTTTAATTTCATTGCT
TAAAAGGGATAAAACAATATTTGTATGTCTTTCATGCTGTAAAGAAAATGAATGTATCTTTCAA
ATGTTAGAGTCATTACTTGATTGTAAGTATATGTGTTTTTAAAAATCTGTAAAGGGTTGAAAAG
AAGAGTATTACAAGTCATTATGTAAGACGCAATGTTGGAAGAAATGGAATTTCATTATAAATGA
GCAGTCACTATCAAAGCATATTTCAGTATAGTGCATATTCATTTTCACATTGCTTTGTTTTATC
TCTAGAAATGTTTCTTAAAAATTGTGTATACTGTTTTGGGTATACACTAATTGGTTTCTACACT
TGTGTGTTAGGCTCAGTGTGCTGCTGCATGTGTCTACCATGGGGAAAAGTTACCAAGTTTTGTC
AATGTCGAAGCCACCAATGGGGGCATCATTGTTAGAATGTGAAACCCATGCCTAGGAGCCACTG
CAGCAACTCTGTGCAGAGGCCTCTGACTGTGCTAATGTGTTTCCCTTTTTATCTTCAATGACAT
GGATAGTAAGACTACTGGGCCCAACTCTCCTGACTTGTGGTGGTTTGTATGCTTACAACTTTAT
TCAGCTAGTGCCCGTAGGTGTGAATGATTTGTTCATTAGCTCTTTAAATCTAGTATTTATCAGT
TATTAAACTTGATGAAAATTGGGAATTCATTGTTTTGACACTTTTCTAGCCATCCATACTAATT
TTAACTCATCATGATGGACCCTGAACAACCAAAAAGTGATCCCTGGTTAGTGTCAGATTTCCTC
TACCCCAGCATTTACAAGGTTGACTGATGACTTAGAAGTTGCATTGTTAAATAAAGTCACTGCC
AAGGATCATGAAGGAGGTAGCTTTCTCTAAACTTTGGCCCAGAGAGGCTGCTTCCTGGTTCCCT
AGATGGACTAAATATCTGCTGTGTGTCTTCATATCCTCTATAGTCACAATTAGGCCTAGTTTAC
CTCTTAAAAATTTTTTTGTTTTCCACTTATATTTGCCTTCCTGGGGAAGGAAGATTCAACCCAA
TTCTATGATTCTCTGGATTCATTTTTCCAAGTTTTTCAATGAGTTAGTGAGATTCCTCATTCAT
GAATCCTGTAGAGTGTGTCCTTTTCCAGTGCTAAAATTGATTTCAAATAGCACTTTATTTCATG
CTTACTACTGATTTAATTTATACATTAAAAATATCTATCCTAGGAATTTTGTAAATACAGAAAA
GCAATTGATTAGTAGTAAAGTTTATTAGATTGGCCCCAAGTTTAAATGCTTTATAATGATCTCT
TGATAGCTTCTTTGATATTTAAGAGGTAACCTATGTGATTGAAGCTCTGCCATTTTCCTGTAAT
CTGTGTAGTACAGTGGAGGCTGGCCCAGCTGGCTGTATTGCTGGACTTACTTCTCTCAGCTAGC
TTCAGCCAAGCTTGGTTGCTAAAACTGTTGATCTGCTCTGCATTTTGTGGACATGACATGAATG
TTTGGAAAGCTGTTTTTTGTCAGTGTAGTACCTAGAGATTCAGTAGATGCTGCACCACCAGTTC
ATAGTTTATATGGAAGACAAAGGACAGAATTTATGACATAACAGTTTCTGTTAAGCTGTTTTCA
TATTCTGCCAGGACAGTATATCTGCTGTAAAAAAAATAAAAGTTGTCTACCCTAGTGGTGCCCA
GCATCAGAACACACCAATTATAAACCATGCTGTGAGCTTTTCAAATAAGAAAGGCTGGTCCTTG
TTTTCTATAGTGCAGGTTAACTTTAGGACTGATGGCTTATACTTATCAGTACTATTTTAAACGT
TAGCTTAAAAATTATTTTTATGTAGAGGGTATTTTAATTTGGGAACTTTCTTTTCTTGTAATAG
GTGCTATATGTAAATATGGAGTGAGAATTTGCTTCATTAAAGGTCTAGCTTATTTCC

hide sequence

RefSeq Acc Id:

XM_039090322 ⟹ XP_038946250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	33,324,808 - 33,504,638 (-)	NCBI
mRatBN7.2	13	30,772,012 - 30,952,337 (-)	NCBI

RefSeq Acc Id:

XM_039090325 ⟹ XP_038946253

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	33,338,728 - 33,504,647 (-)	NCBI
mRatBN7.2	13	30,785,926 - 30,952,338 (-)	NCBI

RefSeq Acc Id:

XM_039090328 ⟹ XP_038946256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	33,324,808 - 33,428,294 (-)	NCBI
mRatBN7.2	13	30,772,012 - 30,876,638 (-)	NCBI

RefSeq Acc Id:

XM_039090329 ⟹ XP_038946257

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	33,324,808 - 33,429,581 (-)	NCBI
mRatBN7.2	13	30,772,012 - 30,876,788 (-)	NCBI

RefSeq Acc Id:

XM_039090330 ⟹ XP_038946258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	33,324,808 - 33,428,347 (-)	NCBI
mRatBN7.2	13	30,772,012 - 30,876,636 (-)	NCBI

RefSeq Acc Id:

XM_063272020 ⟹ XP_063128090

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	33,324,808 - 33,504,647 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001093949	(Get FASTA)	NCBI Sequence Viewer
	XP_017454155	(Get FASTA)	NCBI Sequence Viewer
	XP_017454156	(Get FASTA)	NCBI Sequence Viewer
	XP_038946250	(Get FASTA)	NCBI Sequence Viewer
	XP_038946253	(Get FASTA)	NCBI Sequence Viewer
	XP_038946256	(Get FASTA)	NCBI Sequence Viewer
	XP_038946257	(Get FASTA)	NCBI Sequence Viewer
	XP_038946258	(Get FASTA)	NCBI Sequence Viewer
	XP_063128090	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAM28594	(Get FASTA)	NCBI Sequence Viewer
	EDL87918	(Get FASTA)	NCBI Sequence Viewer
	EDL87919	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003568
	ENSRNOP00000003568.6
	ENSRNOP00000076958.1
	ENSRNOP00000079705.1
	ENSRNOP00000088009
	ENSRNOP00000088009.1
	ENSRNOP00000100519
	ENSRNOP00000100519.1
	ENSRNOP00000110591
	ENSRNOP00000110591.1
	ENSRNOP00000111677.1

RefSeq Acc Id:

NP_001093949 ⟸ NM_001100479

- UniProtKB:

A6K7X3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTARFRLPAGRTYNVRASELARDRQHTEVVCNILLLDNTVQAFRVNKHDQGQVLLDIVFKHLDL
TERDYFGLQLADDSTDNPRWLDPNKPIRKQLKRGSPYNLNFRVKFFVSDPNKLQEEYTRYQYFL
QIKQDILTGRLSCPCNTAALLASFAVQSELGDYNQSENLAGYLSDYSFIPNQPQDFEKEIAKLH
QQHIGLSPAEAEFNYLNTARTLELYGVEFHYARDQSNNEILIGVMSGGILIYKNRVRMNTFLWL
KIVKISFKCKQFFIQLRKELHESRETLLGFNMVNYRACKTLWKACVEHHTFFRLDRPLPPQKNF
FAHYFTLGSKFRYCGRTEVQSVQYGKEKANKDRVFARSPSKPLARKLMDWEVVSRNSLSDDRLE
TQSLPSRSPPGTPNHRNSSFTQEGTRVRPSSVGHLVDHVVHTSPSEDFVSQRSPSSTQANSIVL
ESSPSQETPEDGQPPALPPKQSKKNSWNQIHFSHSQQDLVNHTNESFDVPSSPEKSTPNGGIPH
DNLVLIKMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAE
HTHDQVVLFIKASCERHSGELVLLVRPNAVYDVVEEKLESEPDFQYIPEKAPLDSVHQDDHSLR
ESMIQLAEGLITGTVLAQFDQLYRKKPGMTMSCAKLPQNISKNRYRDISPYDATRVLLKGNEDY
INANYINMEISSSSIINQYIACQGPLPHTCKDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWP
EPSGSSSYGCYQVTCHSEEGNPAYIFRKMTLFNQEKNESRQLTQIQYTAWPDHGVPDDSSDFLD
FVCHVRNKRAGKEEPIIVHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVRTMRDQRAMMIQ
TPSQYRFVCEAILKVYEEGFVKPLTTSSNK

hide sequence

RefSeq Acc Id:

XP_017454156 ⟸ XM_017598667

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTARFRLPAGRTYNVRASELARDRQHTEVVCNILLLDNTVQAFRVNKHDQGQVLLDIVFKHLDL
TERDYFGLQLADDSTDNPRWLDPNKPIRKQLKKLFLLILGGSPYNLNFRVKFFVSDPNKLQEEY
TRYQYFLQIKQDILTGRLSCPCNTAALLASFAVQSELGDYNQSENLAGYLSDYSFIPNQPQDFE
KEIAKLHQQHIGLSPAEAEFNYLNTARTLELYGVEFHYARDQSNNEILIGVMSGGILIYKNRVR
MNTFLWLKIVKISFKCKQFFIQLRKELHESRETLLGFNMVNYRACKTLWKACVEHHTFFRLDRP
LPPQKNFFAHYFTLGSKFRYCGRTEVQSVQYGKEKANKDRVFARSPSKPLARKLMDWEVVSRNS
LSDDRLETQSLPSRSPPGTPNQSQETPEDGQPPALPPKQSKKNSWNQIHFSHSQQDLVNHTNES
FDVPSSPEKSTPNGGIPHDNLVLIKMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVP
RLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELVLLVRPNAVYDVVEEKLESEPDFQY
IPEKAPLDSVHQDDHSLRESMIQLAEGLITGTVLAQFDQLYRKKPGMTMSCAKLPQNISKNRYR
DISPYDATRVLLKGNEDYINANYINMEISSSSIINQYIACQGPLPHTCKDFWQMTWEQGSSMVV
MLTTQVERGRVKCHQYWPEPSGSSSYGCYQVTCHSEEGNPAYIFRKMTLFNQEKNESRQLTQIQ
YTAWPDHGVPDDSSDFLDFVCHVRNKRAGKEEPIIVHCSAGIGRTGVLITMETAMCLIECNQPV
YPLDIVRTMRDQRAMMIQTPSQYRFVCEAILKVYEEGFVKPLTTSSNK

hide sequence

RefSeq Acc Id:	XP_017454155 ⟸ XM_017598666
- Peptide Label:	isoform X1
- UniProtKB:	G3V6B9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTARFRLPAGRTYNVRASELARDRQHTEVVCNILLLDNTVQAFRVNKHDQGQVLLDIVFKHLDL TERDYFGLQLADDSTDNPRWLDPNKPIRKQLKKLFLLILGGSPYNLNFRVKFFVSDPNKLQEEY TRYQYFLQIKQDILTGRLSCPCNTAALLASFAVQSELGDYNQSENLAGYLSDYSFIPNQPQDFE KEIAKLHQQHIGLSPAEAEFNYLNTARTLELYGVEFHYARDQSNNEILIGVMSGGILIYKNRVR MNTFLWLKIVKISFKCKQFFIQLRKELHESRETLLGFNMVNYRACKTLWKACVEHHTFFRLDRP LPPQKNFFAHYFTLGSKFRYCGRTEVQSVQYGKEKANKDRVFARSPSKPLARKLMDWEVVSRNS LSDDRLETQSLPSRSPPGTPNHRNSSFTQEGTRVRPSSVGHLVDHVVHTSPSEDFVSQRSPSST QANSIVLESSPSQETPEDGQPPALPPKQSKKNSWNQIHFSHSQQDLVNHTNESFDVPSSPEKST PNGGIPHDNLVLIKMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLI NGRDIAEHTHDQVVLFIKASCERHSGELVLLVRPNAVYDVVEEKLESEPDFQYIPEKAPLDSVH QDDHSLRESMIQLAEGLITGTVLAQFDQLYRKKPGMTMSCAKLPQNISKNRYRDISPYDATRVL LKGNEDYINANYINMEISSSSIINQYIACQGPLPHTCKDFWQMTWEQGSSMVVMLTTQVERGRV KCHQYWPEPSGSSSYGCYQVTCHSEEGNPAYIFRKMTLFNQEKNESRQLTQIQYTAWPDHGVPD DSSDFLDFVCHVRNKRAGKEEPIIVHCSAGIGRTGVLITMETAMCLIECNQPVYPLDIVRTMRD QRAMMIQTPSQYRFVCEAILKVYEEGFVKPLTTSSNK hide sequence

Ensembl Acc Id:

ENSRNOP00000003568 ⟸ ENSRNOT00000003568

RefSeq Acc Id:	XP_038946250 ⟸ XM_039090322
- Peptide Label:	isoform X1
- UniProtKB:	G3V6B9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946257 ⟸ XM_039090329
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038946256 ⟸ XM_039090328
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038946258 ⟸ XM_039090330
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038946253 ⟸ XM_039090325
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000088009 ⟸ ENSRNOT00000095537

Ensembl Acc Id:

ENSRNOP00000079705 ⟸ ENSRNOT00000108019

Ensembl Acc Id:

ENSRNOP00000076958 ⟸ ENSRNOT00000107559

RefSeq Acc Id:	XP_063128090 ⟸ XM_063272020
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A599 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000100519 ⟸ ENSRNOT00000160454

Ensembl Acc Id:

ENSRNOP00000111677 ⟸ ENSRNOT00000126127

Ensembl Acc Id:

ENSRNOP00000110591 ⟸ ENSRNOT00000128477

Protein Domains

FERM PDZ Tyrosine specific protein phosphatases Tyrosine-protein phosphatase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V6B9-F1-model_v2	AlphaFold	G3V6B9	1-926	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698764

Promoter ID:

EPDNEW_R9288

Type:

multiple initiation site

Name:

Ptpn4_1

Description:

protein tyrosine phosphatase, non-receptor type 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	35,858,402 - 35,858,462	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620712	AgrOrtholog
BioCyc Gene	G2FUF-18518	BioCyc
Ensembl Genes	ENSRNOG00000002625	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003568	ENTREZGENE
	ENSRNOT00000003568.9	UniProtKB/TrEMBL
	ENSRNOT00000095537	ENTREZGENE
	ENSRNOT00000095537.2	UniProtKB/TrEMBL
	ENSRNOT00000107559.2	UniProtKB/TrEMBL
	ENSRNOT00000108019.2	UniProtKB/TrEMBL
	ENSRNOT00000126127.1	UniProtKB/TrEMBL
	ENSRNOT00000128477	ENTREZGENE
	ENSRNOT00000128477.1	UniProtKB/TrEMBL
	ENSRNOT00000160454	ENTREZGENE
	ENSRNOT00000160454.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.80.10	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
	2.30.42.10	UniProtKB/TrEMBL
	3.90.190.10	UniProtKB/TrEMBL
	Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1	UniProtKB/TrEMBL
InterPro	Band_41_domain	UniProtKB/TrEMBL
	Ez/rad/moesin-like	UniProtKB/TrEMBL
	FERM-adjacent	UniProtKB/TrEMBL
	FERM/acyl-CoA-bd_prot_3-hlx	UniProtKB/TrEMBL
	FERM_2	UniProtKB/TrEMBL
	FERM_central	UniProtKB/TrEMBL
	FERM_CS	UniProtKB/TrEMBL
	FERM_domain	UniProtKB/TrEMBL
	FERM_N	UniProtKB/TrEMBL
	FERM_PH-like_C	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	PH_like_dom	UniProtKB/TrEMBL
	Prot-tyrosine_phosphatase-like	UniProtKB/TrEMBL
	PTPN3/4_FERM_C	UniProtKB/TrEMBL
	Tyr/Dual-sp_Pase	UniProtKB/TrEMBL
	Tyr_Pase_AS	UniProtKB/TrEMBL
	Tyr_Pase_cat	UniProtKB/TrEMBL
	Tyr_Pase_non-rcpt_typ-3/4	UniProtKB/TrEMBL
	Tyr_Pase_rcpt/non-rcpt	UniProtKB/TrEMBL
	Ubiquitin-rel_dom	UniProtKB/TrEMBL
KEGG Report	rno:246116	UniProtKB/TrEMBL
NCBI Gene	246116	ENTREZGENE
PANTHER	TYROSINE-PROTEIN PHOSPHATASE	UniProtKB/TrEMBL
	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 4	UniProtKB/TrEMBL
Pfam	FERM_C	UniProtKB/TrEMBL
	FERM_M	UniProtKB/TrEMBL
	FERM_N	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	PF08736	UniProtKB/TrEMBL
	Y_phosphatase	UniProtKB/TrEMBL
PhenoGen	Ptpn4	PhenoGen
PIRSF	Tyr-Ptase_nr3	UniProtKB/TrEMBL
PRINTS	BAND41	UniProtKB/TrEMBL
	ERMFAMILY	UniProtKB/TrEMBL
	PRTYPHPHTASE	UniProtKB/TrEMBL
PROSITE	FERM_1	UniProtKB/TrEMBL
	FERM_2	UniProtKB/TrEMBL
	FERM_3	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_1	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_2	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_PTP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002625	RatGTEx
SMART	B41	UniProtKB/TrEMBL
	FERM_C	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	PTPc	UniProtKB/TrEMBL
	PTPc_motif	UniProtKB/TrEMBL
	SM01195	UniProtKB/TrEMBL
Superfamily-SCOP	FERM_3-hlx	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	PH domain-like	UniProtKB/TrEMBL
	SSF52799	UniProtKB/TrEMBL
	SSF54236	UniProtKB/TrEMBL
UniProt	A0A8I5ZJC3_RAT	UniProtKB/TrEMBL
	A0A8I5ZNX5_RAT	UniProtKB/TrEMBL
	A0A8I6A599	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L6Q8_RAT	UniProtKB/TrEMBL
	A0ABK0M6E0_RAT	UniProtKB/TrEMBL
	A0ABK0M7B4_RAT	UniProtKB/TrEMBL
	A6K7X3	ENTREZGENE, UniProtKB/TrEMBL
	A6K7X4_RAT	UniProtKB/TrEMBL
	G3V6B9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-04-28	Ptpn4	protein tyrosine phosphatase, non-receptor type 4	Ptpn4_predicted	protein tyrosine phosphatase, non-receptor type 4 (predicted)	Data merged from RGD:1307340	737654	APPROVED
2005-01-20	Ptpn4	protein tyrosine phosphatase, non-receptor type 4			Symbol and Name status set to approved	1299863	APPROVED
2005-01-12	Ptpn4_predicted	protein tyrosine phosphatase, non-receptor type 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED
2002-08-07	Ptpn4	protein tyrosine phosphatase, non-receptor type 4			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar